Wall clock time and date at job start Tue Mar 31 2020 19:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53000 * 109.47258 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46983 * 65.00293 * 4 3 2 6 6 C 1.36933 * 120.00194 * 270.00064 * 5 4 3 7 7 H 1.07999 * 120.00442 * 141.76162 * 6 5 4 8 8 C 1.38811 * 119.99798 * 321.75735 * 6 5 4 9 9 N 1.31622 * 119.99692 * 156.55987 * 8 6 5 10 10 Si 1.86794 * 120.00243 * 336.55843 * 8 6 5 11 11 H 1.48501 * 109.46905 * 95.53673 * 10 8 6 12 12 H 1.48503 * 109.47422 * 215.53581 * 10 8 6 13 13 H 1.48497 * 109.47154 * 335.53763 * 10 8 6 14 14 C 1.46504 * 119.99838 * 90.00007 * 5 4 3 15 15 C 1.53008 * 109.47191 * 87.29860 * 14 5 4 16 16 N 1.46491 * 109.46996 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00132 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99616 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00556 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.49496 * 300.06516 * 19 17 16 21 21 C 1.53111 * 109.50038 * 179.97438 * 19 17 16 22 22 C 1.53285 * 109.70551 * 170.13299 * 21 19 17 23 23 N 1.46477 * 108.69009 * 50.77390 * 22 21 19 24 24 C 1.34405 * 128.44569 * 162.68416 * 23 22 21 25 25 N 1.30781 * 108.55415 * 180.14637 * 24 23 22 26 26 C 1.34423 * 109.32252 * 359.94623 * 25 24 23 27 27 C 1.33863 * 107.79627 * 0.02562 * 26 25 24 28 28 C 1.50710 * 128.68170 * 180.13630 * 27 26 25 29 29 H 1.09005 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46539 * 299.99652 * 1 2 3 31 31 H 1.09001 * 109.47006 * 59.99326 * 1 2 3 32 32 H 1.09001 * 109.46969 * 60.00276 * 3 2 1 33 33 H 1.08995 * 109.47690 * 300.00119 * 3 2 1 34 34 H 1.09003 * 109.47587 * 185.00083 * 4 3 2 35 35 H 1.08997 * 109.47603 * 305.00276 * 4 3 2 36 36 H 0.97004 * 119.99840 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47361 * 207.29478 * 14 5 4 38 38 H 1.08995 * 109.47067 * 327.29742 * 14 5 4 39 39 H 1.08999 * 109.46656 * 300.00049 * 15 14 5 40 40 H 1.09003 * 109.47118 * 59.99619 * 15 14 5 41 41 H 0.96999 * 120.00697 * 359.97438 * 16 15 14 42 42 H 1.08999 * 109.43759 * 290.21189 * 21 19 17 43 43 H 1.09005 * 109.43227 * 50.06638 * 21 19 17 44 44 H 1.09000 * 109.59873 * 170.53215 * 22 21 19 45 45 H 1.08998 * 109.60444 * 291.01072 * 22 21 19 46 46 H 1.08007 * 125.71928 * 0.11196 * 24 23 22 47 47 H 1.08001 * 126.10412 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.74150 * 44.55163 * 28 27 26 49 49 H 1.08997 * 109.74340 * 283.83941 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7969 -1.3370 7 1 3.8113 -1.3094 -2.2438 8 6 4.5864 -1.5183 -0.2569 9 7 4.2906 -2.7945 -0.1294 10 14 5.6653 -0.6780 1.0155 11 1 4.8282 -0.2350 2.1593 12 1 6.6970 -1.6314 1.4971 13 1 6.3284 0.5005 0.4017 14 6 4.2863 1.4008 -2.4148 15 6 5.7497 1.8426 -2.3486 16 7 6.0604 2.6784 -3.5109 17 6 7.3001 3.1845 -3.6649 18 8 8.1582 2.9483 -2.8409 19 6 7.6197 4.0448 -4.8602 20 1 7.4520 3.4747 -5.7740 21 6 9.0840 4.4871 -4.7947 22 6 9.4833 5.1506 -6.1176 23 7 8.4901 6.1757 -6.4471 24 6 8.5979 7.1947 -7.3168 25 7 7.4801 7.8736 -7.3030 26 6 6.6284 7.3103 -6.4287 27 6 7.2406 6.2508 -5.8859 28 6 6.7147 5.2848 -4.8555 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.9786 2.1765 0.0889 35 1 3.8515 0.5682 0.8408 36 1 4.6331 -3.2987 0.6251 37 1 4.1202 0.8299 -3.3283 38 1 3.6411 2.2793 -2.4130 39 1 5.9158 2.4136 -1.4351 40 1 6.3949 0.9641 -2.3503 41 1 5.3743 2.8671 -4.1701 42 1 9.2118 5.1988 -3.9790 43 1 9.7179 3.6179 -4.6192 44 1 10.4649 5.6128 -6.0132 45 1 9.5116 4.4013 -6.9086 46 1 9.4627 7.4160 -7.9247 47 1 5.6287 7.6516 -6.2043 48 1 5.6944 4.9962 -5.1083 49 1 6.7328 5.7512 -3.8705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717975235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:57 Heat of formation + Delta-G solvation = -18.984185 kcal Electronic energy + Delta-G solvation = -29238.400408 eV Core-core repulsion = 25201.530642 eV Total energy + Delta-G solvation = -4036.869767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.26236 -40.94396 -39.04179 -37.67386 -37.15178 -35.72525 -34.12830 -33.62539 -31.49324 -31.26432 -29.66471 -28.58624 -27.11293 -25.94823 -25.32143 -24.21381 -23.45294 -22.40435 -21.97875 -21.20981 -20.04505 -18.79627 -18.20753 -18.04892 -17.52899 -17.27382 -16.91435 -16.57251 -16.47593 -16.27466 -15.76682 -15.41337 -15.33491 -15.12409 -14.96362 -14.82469 -14.70213 -14.52680 -14.26498 -14.02065 -14.01623 -13.54269 -13.09027 -12.97887 -12.93790 -12.87750 -12.72545 -12.37390 -12.27668 -12.17131 -12.05972 -11.88527 -11.69458 -11.46959 -11.07501 -10.76962 -10.56641 -10.43111 -10.31981 -10.07094 -9.27682 -8.76835 -8.11656 -5.47858 1.14243 1.29733 1.42110 1.49926 1.59276 1.90203 2.12959 2.22690 2.46869 3.10489 3.15875 3.33821 3.51612 3.56221 3.65000 3.77102 3.95690 4.08119 4.18136 4.22527 4.25568 4.29959 4.40727 4.43509 4.46605 4.53762 4.58379 4.62705 4.66237 4.68893 4.71087 4.73673 4.75162 4.85195 4.91326 4.94328 5.03841 5.09564 5.11058 5.23491 5.43934 5.47995 5.81444 6.01078 6.25540 6.34174 6.58200 6.62023 7.04680 7.14908 7.27325 7.69881 8.08649 9.08645 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002455 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.262655 B =11404.369014 C =12510.827042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.230 4.230 7 H 0.041 0.959 8 C -0.008 4.008 9 N -0.944 5.944 10 Si 0.926 3.074 11 H -0.279 1.279 12 H -0.317 1.317 13 H -0.260 1.260 14 C 0.145 3.855 15 C 0.108 3.892 16 N -0.707 5.707 17 C 0.513 3.487 18 O -0.589 6.589 19 C -0.099 4.099 20 H 0.122 0.878 21 C -0.114 4.114 22 C 0.108 3.892 23 N -0.457 5.457 24 C 0.184 3.816 25 N -0.540 5.540 26 C -0.044 4.044 27 C -0.026 4.026 28 C -0.029 4.029 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.257 0.743 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.031 0.969 41 H 0.417 0.583 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.235 0.765 47 H 0.178 0.822 48 H 0.116 0.884 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 20.073 -12.544 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.360 4.360 7 H 0.059 0.941 8 C -0.205 4.205 9 N -0.588 5.588 10 Si 0.756 3.244 11 H -0.206 1.206 12 H -0.246 1.246 13 H -0.184 1.184 14 C 0.019 3.981 15 C -0.019 4.019 16 N -0.360 5.360 17 C 0.300 3.700 18 O -0.469 6.469 19 C -0.120 4.120 20 H 0.140 0.860 21 C -0.153 4.153 22 C -0.013 4.013 23 N -0.141 5.141 24 C -0.099 4.099 25 N -0.259 5.259 26 C -0.190 4.190 27 C -0.141 4.141 28 C -0.067 4.067 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.136 0.864 45 H 0.126 0.874 46 H 0.252 0.748 47 H 0.195 0.805 48 H 0.135 0.865 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.640 20.184 -12.329 24.103 hybrid contribution 0.335 -0.830 1.288 1.569 sum 4.975 19.353 -11.041 22.830 Atomic orbital electron populations 1.22789 0.81346 1.02400 1.00238 1.88229 1.19839 1.28557 1.95248 1.23190 0.95253 0.84499 0.99930 1.21470 0.92582 0.97324 0.88782 1.44031 1.75943 1.02389 1.10182 1.18410 1.35158 0.81787 1.00689 0.94129 1.25870 0.99359 0.95215 1.00042 1.70010 1.46653 1.10296 1.31887 0.86138 0.79554 0.78380 0.80327 1.20633 1.24586 1.18404 1.21183 0.91295 0.94916 0.90682 1.21959 0.99516 0.92743 0.87679 1.45882 1.12604 1.50957 1.26516 1.21036 0.81825 0.79790 0.87304 1.90717 1.48245 1.61636 1.46281 1.21404 0.97390 0.96240 0.97002 0.85970 1.21654 0.94983 1.01791 0.96827 1.22219 0.91623 0.89798 0.97703 1.45665 1.12889 1.23807 1.31696 1.25423 1.00073 0.87349 0.97006 1.70474 1.02835 1.30098 1.22453 1.22125 1.01305 0.96291 0.99309 1.21155 0.87520 1.02131 1.03248 1.20188 0.99618 0.90513 0.96404 0.90740 0.93230 0.93431 0.92513 0.92387 0.89384 0.94972 0.93399 0.92064 0.89787 0.93665 0.95061 0.74527 0.91652 0.88879 0.86374 0.87394 0.74843 0.80484 0.86535 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -16.87 10.18 -148.98 -1.52 -18.38 16 3 C 0.05 1.70 6.28 71.98 0.45 2.16 16 4 C 0.12 4.85 4.96 86.38 0.43 5.27 16 5 N -0.60 -26.06 2.04 -702.00 -1.43 -27.49 16 6 C -0.23 -12.63 9.39 84.03 0.79 -11.84 16 7 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 8 C -0.01 -0.49 5.28 84.86 0.45 -0.04 16 9 N -0.94 -59.86 13.97 21.65 0.30 -59.56 16 10 Si 0.93 47.25 25.16 68.60 1.73 48.97 16 11 H -0.28 -13.70 6.67 99.48 0.66 -13.04 16 12 H -0.32 -16.73 7.11 99.48 0.71 -16.02 16 13 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.15 4.69 5.78 86.38 0.50 5.19 16 15 C 0.11 3.54 6.00 86.38 0.52 4.06 16 16 N -0.71 -16.25 5.46 -463.05 -2.53 -18.78 16 17 C 0.51 12.61 7.13 87.66 0.63 13.23 16 18 O -0.59 -20.66 15.82 -3.07 -0.05 -20.71 16 19 C -0.10 -1.49 2.55 -11.33 -0.03 -1.52 16 20 H 0.12 1.42 8.12 -2.39 -0.02 1.40 16 21 C -0.11 -1.65 4.65 30.73 0.14 -1.51 16 22 C 0.11 0.95 7.00 86.48 0.61 1.55 16 23 N -0.46 -6.38 3.13 -514.84 -1.61 -7.99 16 24 C 0.18 2.79 12.66 180.38 2.28 5.08 16 25 N -0.54 -11.70 11.27 -200.97 -2.26 -13.97 16 26 C -0.04 -0.84 11.84 83.30 0.99 0.15 16 27 C -0.03 -0.42 6.57 40.73 0.27 -0.15 16 28 C -0.03 -0.38 5.45 30.02 0.16 -0.21 16 29 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 2.82 8.07 -2.39 -0.02 2.80 16 35 H 0.03 1.48 3.45 -2.39 -0.01 1.47 16 36 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.06 1.99 8.02 -2.39 -0.02 1.97 16 38 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.42 6.22 8.20 -92.71 -0.76 5.46 16 42 H 0.06 1.15 8.11 -2.39 -0.02 1.14 16 43 H 0.09 1.51 7.77 -2.38 -0.02 1.49 16 44 H 0.12 0.56 8.14 -2.39 -0.02 0.55 16 45 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.24 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 48 H 0.12 1.00 7.95 -2.39 -0.02 0.98 16 49 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 Total: -1.00 -83.96 396.11 2.19 -81.77 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.14 Total: 12.59 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 9.43 Total: 23.55 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -7.54 Total: -127.79 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.56 Total: -39.09 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.73 Total: 48.97 kcal Total: -83.96 2.19 -81.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.786 kcal (2) G-P(sol) polarization free energy of solvation -83.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds