Wall clock time and date at job start Tue Mar 31 2020 19:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00046 * 2 1 4 4 C 1.52992 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47377 * 64.99762 * 4 3 2 6 6 C 1.36939 * 119.99997 * 270.00199 * 5 4 3 7 7 H 1.08008 * 119.99553 * 142.64247 * 6 5 4 8 8 C 1.38809 * 120.00228 * 322.64193 * 6 5 4 9 9 N 1.31619 * 120.00062 * 157.14264 * 8 6 5 10 10 Si 1.86796 * 119.99751 * 337.14497 * 8 6 5 11 11 H 1.48500 * 109.47307 * 95.37064 * 10 8 6 12 12 H 1.48510 * 109.46946 * 215.36662 * 10 8 6 13 13 H 1.48496 * 109.47502 * 335.36532 * 10 8 6 14 14 C 1.46500 * 119.99658 * 89.99894 * 5 4 3 15 15 C 1.52998 * 109.47352 * 266.84939 * 14 5 4 16 16 N 1.46502 * 109.47336 * 179.05494 * 15 14 5 17 17 C 1.34770 * 120.00123 * 180.27808 * 16 15 14 18 18 O 1.21290 * 119.99941 * 359.72037 * 17 16 15 19 19 C 1.50697 * 120.00183 * 179.72417 * 17 16 15 20 20 H 1.09002 * 109.49799 * 60.06587 * 19 17 16 21 21 C 1.53114 * 109.50055 * 180.16193 * 19 17 16 22 22 C 1.53277 * 109.70703 * 189.86510 * 21 19 17 23 23 N 1.46475 * 108.69293 * 309.22545 * 22 21 19 24 24 C 1.34401 * 128.44882 * 197.36423 * 23 22 21 25 25 N 1.30786 * 108.55710 * 179.77279 * 24 23 22 26 26 C 1.34424 * 109.31839 * 0.06767 * 25 24 23 27 27 C 1.33857 * 107.80228 * 0.02562 * 26 25 24 28 28 C 1.50714 * 128.68666 * 179.91130 * 27 26 25 29 29 H 1.08996 * 109.47459 * 59.99932 * 1 2 3 30 30 H 1.08998 * 109.46845 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46730 * 299.99423 * 1 2 3 32 32 H 1.09001 * 109.46920 * 59.99941 * 3 2 1 33 33 H 1.09004 * 109.47148 * 300.00260 * 3 2 1 34 34 H 1.09001 * 109.47019 * 305.00341 * 4 3 2 35 35 H 1.08998 * 109.47421 * 185.00180 * 4 3 2 36 36 H 0.96996 * 120.00182 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.46802 * 146.85004 * 14 5 4 38 38 H 1.08997 * 109.47224 * 26.85411 * 14 5 4 39 39 H 1.09000 * 109.47096 * 59.05359 * 15 14 5 40 40 H 1.08999 * 109.47373 * 299.05604 * 15 14 5 41 41 H 0.97002 * 119.99415 * 0.02562 * 16 15 14 42 42 H 1.09003 * 109.43455 * 309.93562 * 21 19 17 43 43 H 1.09003 * 109.43132 * 69.79024 * 21 19 17 44 44 H 1.09003 * 109.60236 * 189.46938 * 22 21 19 45 45 H 1.09000 * 109.60341 * 68.98936 * 22 21 19 46 46 H 1.08001 * 125.71899 * 359.76572 * 24 23 22 47 47 H 1.08005 * 126.10292 * 180.02562 * 26 25 24 48 48 H 1.08995 * 109.74398 * 76.04662 * 28 27 26 49 49 H 1.09000 * 109.73818 * 315.32977 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7970 -1.3368 7 1 3.8248 -1.3080 -2.2487 8 6 4.5692 -1.5202 -0.2503 9 7 4.2798 -2.7990 -0.1350 10 14 5.6155 -0.6785 1.0482 11 1 4.7512 -0.2434 2.1747 12 1 6.6411 -1.6284 1.5495 13 1 6.2860 0.5051 0.4529 14 6 4.2863 1.4007 -2.4148 15 6 3.0424 1.5319 -3.2959 16 7 3.3467 2.3866 -4.4462 17 6 2.3928 2.6497 -5.3612 18 8 1.2840 2.1747 -5.2351 19 6 2.7040 3.5340 -6.5412 20 1 3.5118 3.0916 -7.1243 21 6 1.4568 3.6735 -7.4183 22 6 1.8267 4.3614 -8.7372 23 7 2.5711 5.5862 -8.4351 24 6 2.8097 6.6383 -9.2367 25 7 3.5092 7.5195 -8.5699 26 6 3.7384 7.0579 -7.3283 27 6 3.1626 5.8538 -7.2265 28 6 3.1322 4.9212 -6.0430 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9785 2.1766 0.0889 36 1 4.6101 -3.3045 0.6241 37 1 5.0911 0.9410 -2.9885 38 1 4.5989 2.3891 -2.0780 39 1 2.2325 1.9762 -2.7173 40 1 2.7397 0.5452 -3.6464 41 1 4.2336 2.7662 -4.5472 42 1 1.0479 2.6849 -7.6272 43 1 0.7102 4.2707 -6.8947 44 1 0.9190 4.6113 -9.2864 45 1 2.4473 3.6946 -9.3359 46 1 2.4793 6.7390 -10.2600 47 1 4.2890 7.5676 -6.5515 48 1 2.4161 5.2847 -5.3061 49 1 4.1243 4.8619 -5.5954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717975236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:03 Heat of formation + Delta-G solvation = 8.609305 kcal Electronic energy + Delta-G solvation = -29475.463065 eV Core-core repulsion = 25439.789842 eV Total energy + Delta-G solvation = -4035.673223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.62032 -39.90020 -37.53442 -36.59961 -35.87751 -34.38440 -33.40212 -31.62975 -30.79571 -29.87873 -28.54159 -27.46455 -25.67115 -25.07520 -24.02937 -22.95410 -21.95427 -21.69991 -20.80222 -20.10624 -19.37277 -17.54352 -17.19434 -16.82084 -16.21865 -16.00411 -15.63350 -15.47224 -15.28810 -14.70880 -14.46073 -14.38349 -14.28529 -14.15330 -13.96161 -13.84727 -13.56679 -13.41959 -13.16831 -12.60270 -12.49774 -12.31619 -12.14652 -11.92179 -11.70840 -11.55591 -11.41297 -11.20338 -11.01127 -10.73890 -10.66845 -10.28625 -10.27590 -9.80803 -9.78400 -9.77079 -9.57080 -8.96799 -8.73070 -8.61676 -8.45132 -6.90091 -5.91770 -3.34617 1.77047 2.46599 2.61473 2.90922 3.16959 3.33769 3.47617 3.50506 4.02285 4.19142 4.24488 4.37579 4.48905 4.55731 4.59089 4.71397 4.75818 4.84216 4.95472 5.07262 5.08142 5.29797 5.34423 5.43571 5.47128 5.57755 5.60901 5.64780 5.73574 5.74582 5.82473 5.91525 5.99156 6.07337 6.08319 6.12915 6.17957 6.28763 6.46586 6.50088 6.51617 6.70620 6.77653 6.92041 7.57646 7.80172 7.95170 8.10934 8.25963 8.43065 8.97553 9.76076 10.09477 11.23904 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.002423 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.069405 B =11553.723352 C =12047.150732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.260 4.260 7 H 0.076 0.924 8 C 0.046 3.954 9 N -0.893 5.893 10 Si 0.874 3.126 11 H -0.286 1.286 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.140 3.860 15 C 0.095 3.905 16 N -0.722 5.722 17 C 0.515 3.485 18 O -0.540 6.540 19 C -0.112 4.112 20 H 0.101 0.899 21 C -0.115 4.115 22 C 0.103 3.897 23 N -0.456 5.456 24 C 0.182 3.818 25 N -0.498 5.498 26 C -0.023 4.023 27 C -0.021 4.021 28 C -0.036 4.036 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.397 0.603 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.204 0.796 47 H 0.170 0.830 48 H 0.088 0.912 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 16.556 -14.020 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.035 4.035 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.388 4.388 7 H 0.093 0.907 8 C -0.155 4.155 9 N -0.533 5.533 10 Si 0.705 3.295 11 H -0.214 1.214 12 H -0.231 1.231 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.030 4.030 16 N -0.372 5.372 17 C 0.299 3.701 18 O -0.417 6.417 19 C -0.134 4.134 20 H 0.119 0.881 21 C -0.153 4.153 22 C -0.019 4.019 23 N -0.140 5.140 24 C -0.100 4.100 25 N -0.216 5.216 26 C -0.170 4.170 27 C -0.135 4.135 28 C -0.074 4.074 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.231 0.769 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.220 0.780 47 H 0.187 0.813 48 H 0.106 0.894 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.230 16.460 -14.172 22.128 hybrid contribution 0.289 -0.009 0.999 1.040 sum -3.941 16.451 -13.172 21.440 Atomic orbital electron populations 1.22647 0.83722 1.01916 0.98314 1.88298 1.16968 1.26308 1.94794 1.23328 0.97280 0.85264 0.97665 1.21394 0.90467 0.96585 0.90937 1.43893 1.76172 1.03848 1.07314 1.18545 1.38686 0.79523 1.02021 0.90663 1.25314 0.97767 0.94809 0.97574 1.69889 1.44595 1.08372 1.30488 0.86993 0.81125 0.79283 0.82145 1.21444 1.23089 1.19627 1.21002 0.93700 0.94491 0.89559 1.22425 1.00764 0.94108 0.85701 1.46102 1.14287 1.51386 1.25460 1.20275 0.85009 0.81298 0.83479 1.90727 1.22336 1.52290 1.76304 1.21438 1.00030 0.95759 0.96137 0.88050 1.21690 0.97241 1.02902 0.93437 1.22082 0.96726 0.84100 0.98982 1.45496 1.40610 1.16522 1.11372 1.24794 1.02094 0.84430 0.98694 1.70506 1.16889 1.28927 1.05273 1.21848 1.05550 0.93910 0.95683 1.21036 1.04513 0.99201 0.88792 1.20186 1.03423 0.90264 0.93549 0.95131 0.90296 0.95618 0.95441 0.94379 0.91763 0.92685 0.92898 0.92077 0.93932 0.92161 0.91093 0.76942 0.88184 0.90101 0.88593 0.89395 0.77958 0.81320 0.89385 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.76 10.18 -35.23 -0.36 -8.12 16 3 C 0.04 0.85 6.28 37.15 0.23 1.08 16 4 C 0.13 2.74 4.98 -4.04 -0.02 2.72 16 5 N -0.59 -13.12 2.06 -173.24 -0.36 -13.48 16 6 C -0.26 -7.01 9.42 -15.06 -0.14 -7.15 16 7 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 8 C 0.05 1.31 5.30 -17.43 -0.09 1.22 16 9 N -0.89 -27.16 13.97 55.49 0.78 -26.38 16 10 Si 0.87 21.72 25.07 -169.99 -4.26 17.46 16 11 H -0.29 -7.02 6.66 56.52 0.38 -6.64 16 12 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.14 2.42 5.83 -4.04 -0.02 2.40 16 15 C 0.10 1.57 5.99 -4.04 -0.02 1.54 16 16 N -0.72 -8.80 5.46 -60.29 -0.33 -9.13 16 17 C 0.51 6.48 7.13 -10.99 -0.08 6.40 16 18 O -0.54 -9.18 15.82 5.55 0.09 -9.09 16 19 C -0.11 -0.95 2.55 -91.46 -0.23 -1.19 16 20 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 21 C -0.11 -0.90 4.66 -26.53 -0.12 -1.03 16 22 C 0.10 0.60 7.00 -3.91 -0.03 0.57 16 23 N -0.46 -3.74 3.13 -114.08 -0.36 -4.10 16 24 C 0.18 1.59 12.66 -90.72 -1.15 0.44 16 25 N -0.50 -5.74 11.27 -14.87 -0.17 -5.91 16 26 C -0.02 -0.23 11.84 -17.96 -0.21 -0.44 16 27 C -0.02 -0.19 6.57 -81.72 -0.54 -0.73 16 28 C -0.04 -0.28 5.44 -27.62 -0.15 -0.43 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.69 6.30 -51.93 -0.33 0.37 16 34 H 0.06 1.51 3.28 -51.93 -0.17 1.34 16 35 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 38 H 0.04 0.62 7.86 -51.93 -0.41 0.22 16 39 H 0.06 1.07 6.30 -51.93 -0.33 0.74 16 40 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.40 3.58 8.19 -40.82 -0.33 3.25 16 42 H 0.10 0.84 7.77 -51.93 -0.40 0.44 16 43 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 48 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 49 H 0.09 0.57 7.95 -51.93 -0.41 0.16 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -36.20 391.88 -8.39 -44.59 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.86 Total: 1.19 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.47 Total: 7.07 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.44 Total: -59.01 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.27 Total: -17.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.26 Total: 17.46 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.20 -8.39 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.198 kcal (2) G-P(sol) polarization free energy of solvation -36.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds