Wall clock time and date at job start Tue Mar 31 2020 19:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00046 * 2 1 4 4 C 1.52992 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47377 * 64.99762 * 4 3 2 6 6 C 1.36939 * 119.99997 * 270.00199 * 5 4 3 7 7 H 1.08008 * 119.99553 * 142.64247 * 6 5 4 8 8 C 1.38809 * 120.00228 * 322.64193 * 6 5 4 9 9 N 1.31619 * 120.00062 * 157.14264 * 8 6 5 10 10 Si 1.86796 * 119.99751 * 337.14497 * 8 6 5 11 11 H 1.48500 * 109.47307 * 95.37064 * 10 8 6 12 12 H 1.48510 * 109.46946 * 215.36662 * 10 8 6 13 13 H 1.48496 * 109.47502 * 335.36532 * 10 8 6 14 14 C 1.46500 * 119.99658 * 89.99894 * 5 4 3 15 15 C 1.52998 * 109.47352 * 266.84939 * 14 5 4 16 16 N 1.46502 * 109.47336 * 179.05494 * 15 14 5 17 17 C 1.34770 * 120.00123 * 180.27808 * 16 15 14 18 18 O 1.21290 * 119.99941 * 359.72037 * 17 16 15 19 19 C 1.50697 * 120.00183 * 179.72417 * 17 16 15 20 20 H 1.09002 * 109.49799 * 60.06587 * 19 17 16 21 21 C 1.53114 * 109.50055 * 180.16193 * 19 17 16 22 22 C 1.53277 * 109.70703 * 189.86510 * 21 19 17 23 23 N 1.46475 * 108.69293 * 309.22545 * 22 21 19 24 24 C 1.34401 * 128.44882 * 197.36423 * 23 22 21 25 25 N 1.30786 * 108.55710 * 179.77279 * 24 23 22 26 26 C 1.34424 * 109.31839 * 0.06767 * 25 24 23 27 27 C 1.33857 * 107.80228 * 0.02562 * 26 25 24 28 28 C 1.50714 * 128.68666 * 179.91130 * 27 26 25 29 29 H 1.08996 * 109.47459 * 59.99932 * 1 2 3 30 30 H 1.08998 * 109.46845 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46730 * 299.99423 * 1 2 3 32 32 H 1.09001 * 109.46920 * 59.99941 * 3 2 1 33 33 H 1.09004 * 109.47148 * 300.00260 * 3 2 1 34 34 H 1.09001 * 109.47019 * 305.00341 * 4 3 2 35 35 H 1.08998 * 109.47421 * 185.00180 * 4 3 2 36 36 H 0.96996 * 120.00182 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.46802 * 146.85004 * 14 5 4 38 38 H 1.08997 * 109.47224 * 26.85411 * 14 5 4 39 39 H 1.09000 * 109.47096 * 59.05359 * 15 14 5 40 40 H 1.08999 * 109.47373 * 299.05604 * 15 14 5 41 41 H 0.97002 * 119.99415 * 0.02562 * 16 15 14 42 42 H 1.09003 * 109.43455 * 309.93562 * 21 19 17 43 43 H 1.09003 * 109.43132 * 69.79024 * 21 19 17 44 44 H 1.09003 * 109.60236 * 189.46938 * 22 21 19 45 45 H 1.09000 * 109.60341 * 68.98936 * 22 21 19 46 46 H 1.08001 * 125.71899 * 359.76572 * 24 23 22 47 47 H 1.08005 * 126.10292 * 180.02562 * 26 25 24 48 48 H 1.08995 * 109.74398 * 76.04662 * 28 27 26 49 49 H 1.09000 * 109.73818 * 315.32977 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7970 -1.3368 7 1 3.8248 -1.3080 -2.2487 8 6 4.5692 -1.5202 -0.2503 9 7 4.2798 -2.7990 -0.1350 10 14 5.6155 -0.6785 1.0482 11 1 4.7512 -0.2434 2.1747 12 1 6.6411 -1.6284 1.5495 13 1 6.2860 0.5051 0.4529 14 6 4.2863 1.4007 -2.4148 15 6 3.0424 1.5319 -3.2959 16 7 3.3467 2.3866 -4.4462 17 6 2.3928 2.6497 -5.3612 18 8 1.2840 2.1747 -5.2351 19 6 2.7040 3.5340 -6.5412 20 1 3.5118 3.0916 -7.1243 21 6 1.4568 3.6735 -7.4183 22 6 1.8267 4.3614 -8.7372 23 7 2.5711 5.5862 -8.4351 24 6 2.8097 6.6383 -9.2367 25 7 3.5092 7.5195 -8.5699 26 6 3.7384 7.0579 -7.3283 27 6 3.1626 5.8538 -7.2265 28 6 3.1322 4.9212 -6.0430 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9785 2.1766 0.0889 36 1 4.6101 -3.3045 0.6241 37 1 5.0911 0.9410 -2.9885 38 1 4.5989 2.3891 -2.0780 39 1 2.2325 1.9762 -2.7173 40 1 2.7397 0.5452 -3.6464 41 1 4.2336 2.7662 -4.5472 42 1 1.0479 2.6849 -7.6272 43 1 0.7102 4.2707 -6.8947 44 1 0.9190 4.6113 -9.2864 45 1 2.4473 3.6946 -9.3359 46 1 2.4793 6.7390 -10.2600 47 1 4.2890 7.5676 -6.5515 48 1 2.4161 5.2847 -5.3061 49 1 4.1243 4.8619 -5.5954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717975236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:01 Heat of formation + Delta-G solvation = -17.103390 kcal Electronic energy + Delta-G solvation = -29476.578051 eV Core-core repulsion = 25439.789842 eV Total energy + Delta-G solvation = -4036.788209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.26149 -40.94779 -39.10747 -37.64551 -37.15257 -35.73480 -34.13051 -33.61040 -31.48739 -31.24333 -29.74201 -28.60628 -27.18126 -25.96786 -25.39182 -24.06869 -23.17325 -22.39902 -22.34152 -21.21484 -20.04814 -18.79145 -18.20037 -18.04839 -17.71608 -17.04012 -16.97045 -16.63897 -16.39639 -16.32694 -15.78258 -15.45833 -15.27487 -15.11122 -14.94479 -14.74973 -14.69444 -14.52548 -14.36721 -14.02486 -13.98768 -13.60240 -13.19973 -12.98507 -12.90828 -12.86480 -12.56734 -12.42385 -12.29854 -12.16584 -12.05722 -11.86786 -11.67733 -11.40084 -11.08979 -10.78738 -10.53652 -10.43031 -10.38825 -10.03033 -9.27703 -8.76311 -8.07257 -5.46259 1.14241 1.37624 1.46565 1.57287 1.59342 1.90256 2.13253 2.22713 2.52325 3.10886 3.12382 3.35220 3.52327 3.56304 3.64505 3.76951 3.95701 4.08080 4.18089 4.19696 4.24061 4.29806 4.36692 4.39280 4.46613 4.51142 4.54056 4.56471 4.63574 4.65505 4.70807 4.74565 4.76674 4.84185 4.85400 4.94344 5.01335 5.09625 5.14832 5.22965 5.43906 5.49089 5.81462 6.02266 6.27009 6.34247 6.55459 6.58008 7.06259 7.14948 7.26911 7.72229 8.09447 9.13032 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.002423 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.069405 B =11553.723352 C =12047.150732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.237 4.237 7 H 0.028 0.972 8 C -0.016 4.016 9 N -0.950 5.950 10 Si 0.944 3.056 11 H -0.282 1.282 12 H -0.316 1.316 13 H -0.245 1.245 14 C 0.141 3.859 15 C 0.116 3.884 16 N -0.709 5.709 17 C 0.515 3.485 18 O -0.587 6.587 19 C -0.099 4.099 20 H 0.121 0.879 21 C -0.114 4.114 22 C 0.107 3.893 23 N -0.457 5.457 24 C 0.184 3.816 25 N -0.540 5.540 26 C -0.044 4.044 27 C -0.026 4.026 28 C -0.029 4.029 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.257 0.743 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.024 0.976 41 H 0.417 0.583 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.235 0.765 47 H 0.178 0.822 48 H 0.082 0.918 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 19.666 -14.642 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C -0.035 4.035 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.366 4.366 7 H 0.046 0.954 8 C -0.212 4.212 9 N -0.594 5.594 10 Si 0.773 3.227 11 H -0.209 1.209 12 H -0.245 1.245 13 H -0.168 1.168 14 C 0.015 3.985 15 C -0.011 4.011 16 N -0.361 5.361 17 C 0.302 3.698 18 O -0.467 6.467 19 C -0.121 4.121 20 H 0.139 0.861 21 C -0.152 4.152 22 C -0.014 4.014 23 N -0.141 5.141 24 C -0.098 4.098 25 N -0.259 5.259 26 C -0.190 4.190 27 C -0.140 4.140 28 C -0.067 4.067 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.136 0.864 45 H 0.126 0.874 46 H 0.252 0.748 47 H 0.195 0.805 48 H 0.101 0.899 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.492 19.646 -14.820 24.855 hybrid contribution -0.071 -0.952 1.071 1.435 sum -3.562 18.694 -13.748 23.477 Atomic orbital electron populations 1.22761 0.81626 1.02369 0.99927 1.88220 1.19564 1.28604 1.95192 1.23365 0.96279 0.84422 0.99448 1.21586 0.91757 0.97938 0.88947 1.43972 1.76708 1.02528 1.09334 1.18307 1.36429 0.81986 0.99923 0.95413 1.25963 0.99463 0.95330 1.00459 1.70050 1.46993 1.10500 1.31877 0.85865 0.78819 0.78514 0.79509 1.20928 1.24526 1.16847 1.21148 0.93672 0.95680 0.88020 1.21867 1.00070 0.92468 0.86684 1.45875 1.15419 1.50523 1.24252 1.20993 0.84053 0.80808 0.83986 1.90714 1.24420 1.54188 1.77407 1.21396 1.00973 0.95361 0.94329 0.86078 1.21648 0.96571 1.02560 0.94411 1.22221 0.97915 0.83338 0.97895 1.45667 1.40333 1.17024 1.11033 1.25422 1.00917 0.83798 0.99710 1.70478 1.18663 1.30544 1.06192 1.22123 1.06383 0.94670 0.95873 1.21157 1.04362 0.99096 0.89432 1.20184 1.04458 0.89044 0.93034 0.94464 0.90617 0.92839 0.92440 0.93531 0.94409 0.88254 0.93382 0.92139 0.89490 0.93208 0.95707 0.74589 0.88865 0.91601 0.86352 0.87437 0.74844 0.80510 0.89949 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 11.01 113.37 1.25 2.27 16 2 O -0.40 -17.78 10.18 -148.98 -1.52 -19.29 16 3 C 0.04 1.58 6.28 71.98 0.45 2.03 16 4 C 0.12 4.76 4.98 86.38 0.43 5.19 16 5 N -0.60 -26.11 2.06 -702.02 -1.45 -27.55 16 6 C -0.24 -13.10 9.42 84.03 0.79 -12.30 16 7 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 8 C -0.02 -0.94 5.30 84.86 0.45 -0.49 16 9 N -0.95 -60.35 13.97 21.65 0.30 -60.04 16 10 Si 0.94 45.20 25.07 68.60 1.72 46.92 16 11 H -0.28 -13.12 6.66 99.48 0.66 -12.46 16 12 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 13 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 14 C 0.14 4.56 5.83 86.38 0.50 5.06 16 15 C 0.12 3.74 5.99 86.38 0.52 4.26 16 16 N -0.71 -15.99 5.46 -463.06 -2.53 -18.52 16 17 C 0.51 12.34 7.13 87.66 0.63 12.97 16 18 O -0.59 -20.09 15.82 -3.06 -0.05 -20.14 16 19 C -0.10 -1.46 2.55 -11.34 -0.03 -1.49 16 20 H 0.12 1.39 8.12 -2.39 -0.02 1.37 16 21 C -0.11 -1.60 4.66 30.73 0.14 -1.45 16 22 C 0.11 0.92 7.00 86.48 0.61 1.52 16 23 N -0.46 -6.29 3.13 -514.85 -1.61 -7.90 16 24 C 0.18 2.77 12.66 180.38 2.28 5.05 16 25 N -0.54 -11.66 11.27 -200.97 -2.26 -13.92 16 26 C -0.04 -0.84 11.84 83.30 0.99 0.15 16 27 C -0.03 -0.41 6.57 40.73 0.27 -0.14 16 28 C -0.03 -0.37 5.44 30.02 0.16 -0.20 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.60 6.30 -2.38 -0.02 1.58 16 34 H 0.04 1.69 3.28 -2.39 -0.01 1.68 16 35 H 0.10 2.95 7.87 -2.39 -0.02 2.93 16 36 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 38 H 0.09 2.12 7.86 -2.39 -0.02 2.10 16 39 H 0.05 1.73 6.30 -2.39 -0.02 1.71 16 40 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.42 6.16 8.19 -92.71 -0.76 5.40 16 42 H 0.09 1.47 7.77 -2.39 -0.02 1.45 16 43 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 44 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 47 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 48 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 49 H 0.12 0.98 7.95 -2.39 -0.02 0.96 16 Total: -1.00 -84.12 391.88 2.19 -81.92 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.15 Total: 16.12 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 9.44 Total: 22.42 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -7.55 Total: -127.95 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.56 Total: -39.43 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.72 Total: 46.92 kcal Total: -84.12 2.19 -81.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.820 kcal (2) G-P(sol) polarization free energy of solvation -84.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds