Wall clock time and date at job start Tue Mar 31 2020 19:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99811 * 2 1 4 4 H 1.48493 * 109.47338 * 240.00010 * 3 2 1 5 5 H 1.48506 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46789 * 119.99957 * 3 2 1 7 7 C 1.38812 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00023 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52135 * 205.00076 * 10 9 7 12 12 C 1.53043 * 109.27437 * 182.37926 * 11 10 9 13 13 N 1.46846 * 109.52551 * 59.17623 * 12 11 10 14 14 C 1.46898 * 110.99661 * 174.15911 * 13 12 11 15 15 C 1.53004 * 109.46947 * 170.00175 * 14 13 12 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 C 1.52999 * 109.47004 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.47522 * 179.97438 * 20 19 17 22 22 C 1.35350 * 126.91569 * 274.69018 * 21 20 19 23 23 N 1.33768 * 106.49820 * 179.90140 * 22 21 20 24 24 N 1.28630 * 108.88397 * 0.36627 * 23 22 21 25 25 N 1.28718 * 110.18173 * 359.76619 * 24 23 22 26 26 H 0.96994 * 125.86683 * 180.02562 * 25 24 23 27 27 C 1.46846 * 111.19938 * 298.25992 * 13 12 11 28 28 C 1.53034 * 109.52410 * 61.73922 * 27 13 12 29 29 H 0.96992 * 120.00250 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00184 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.52312 * 325.12593 * 10 9 7 32 32 H 1.09001 * 109.50329 * 62.43831 * 11 10 9 33 33 H 1.09001 * 109.50285 * 302.31368 * 11 10 9 34 34 H 1.08996 * 109.45755 * 299.15893 * 12 11 10 35 35 H 1.09000 * 109.45194 * 179.19440 * 12 11 10 36 36 H 1.08995 * 109.47478 * 50.00657 * 14 13 12 37 37 H 1.09006 * 109.47065 * 290.00054 * 14 13 12 38 38 H 1.09009 * 109.46730 * 59.99875 * 15 14 13 39 39 H 1.08998 * 109.46846 * 300.00419 * 15 14 13 40 40 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 41 41 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 42 42 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 43 43 H 1.09000 * 109.47527 * 299.99994 * 20 19 17 44 44 H 1.09007 * 109.47302 * 59.99534 * 20 19 17 45 45 H 1.08004 * 126.74876 * 0.02829 * 22 21 20 46 46 H 1.08996 * 109.45656 * 181.75824 * 27 13 12 47 47 H 1.08997 * 109.45948 * 301.72420 * 27 13 12 48 48 H 1.08999 * 109.50603 * 180.88028 * 28 27 13 49 49 H 1.09002 * 109.50382 * 60.76068 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0005 11 6 1.1814 -4.7539 -0.6094 12 6 1.9289 -6.0881 -0.5524 13 7 2.2492 -6.4120 0.8436 14 6 2.8441 -7.7510 0.9501 15 6 3.3898 -7.9554 2.3648 16 7 3.9836 -9.2905 2.4709 17 6 4.5260 -9.6960 3.6362 18 8 4.5271 -8.9538 4.5954 19 6 5.1313 -11.0716 3.7471 20 6 5.6726 -11.2780 5.1632 21 6 6.2774 -12.6538 5.2744 22 6 5.6277 -13.8070 5.5574 23 7 6.5513 -14.7746 5.5516 24 7 7.6981 -14.2540 5.2904 25 7 7.5801 -12.9840 5.1170 26 1 8.3011 -12.3694 4.9090 27 6 3.1291 -5.3965 1.4359 28 6 2.4175 -4.0417 1.4383 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.9703 -3.5508 -0.5869 32 1 0.9576 -4.5061 -1.6470 33 1 0.2523 -4.8330 -0.0449 34 1 2.8511 -6.0125 -1.1285 35 1 1.3015 -6.8740 -0.9730 36 1 3.6567 -7.8459 0.2300 37 1 2.0839 -8.5039 0.7416 38 1 2.5771 -7.8605 3.0850 39 1 4.1498 -7.2025 2.5733 40 1 3.9824 -9.8842 1.7038 41 1 4.3693 -11.8220 3.5362 42 1 5.9458 -11.1693 3.0294 43 1 6.4347 -10.5277 5.3738 44 1 4.8584 -11.1802 5.8813 45 1 4.5710 -13.9233 5.7482 46 1 3.3735 -5.6803 2.4595 47 1 4.0457 -5.3242 0.8506 48 1 3.0767 -3.2851 1.8637 49 1 1.5077 -4.1096 2.0349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724631492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:17 Heat of formation + Delta-G solvation = 65.643803 kcal Electronic energy + Delta-G solvation = -27698.825492 eV Core-core repulsion = 23697.918222 eV Total energy + Delta-G solvation = -4000.907270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.82006 -40.22740 -38.95388 -36.00201 -34.98944 -34.49483 -33.67883 -32.36041 -30.87672 -30.51016 -29.77217 -27.87712 -25.53679 -24.26230 -23.48116 -23.33834 -22.34188 -21.97172 -21.11451 -20.71761 -19.34193 -18.81695 -17.54574 -17.08850 -16.74080 -16.40397 -16.38435 -15.48948 -15.35201 -14.94133 -14.81475 -14.65777 -14.40659 -14.04657 -13.72438 -13.65904 -13.46933 -13.21943 -12.98787 -12.91140 -12.46230 -12.29605 -11.96421 -11.90679 -11.65464 -11.58096 -11.35787 -11.19933 -11.10405 -10.87063 -10.79180 -10.60069 -10.37472 -10.25407 -10.21737 -9.74271 -9.69185 -9.59174 -9.43557 -8.86242 -8.29145 -6.94347 -5.75730 -3.04344 0.99498 2.03467 2.18364 2.20707 2.68640 3.43569 3.48097 3.49083 3.80108 4.01245 4.09172 4.21464 4.36141 4.47794 4.58854 4.62919 4.64573 4.80739 4.87343 4.88651 5.15181 5.17243 5.30196 5.32529 5.34646 5.39436 5.54920 5.58120 5.60978 5.63282 5.68462 5.72026 5.85519 5.99593 6.02062 6.11964 6.25660 6.28100 6.46453 6.49201 6.63984 6.86297 7.01158 7.07529 7.19263 7.22013 7.69424 7.78148 7.92900 8.43017 9.53951 10.12612 10.47484 11.46875 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.001476 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.715152 B =18968.564093 C =19541.488144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.121 4.121 12 C 0.064 3.936 13 N -0.531 5.531 14 C 0.046 3.954 15 C 0.113 3.887 16 N -0.729 5.729 17 C 0.512 3.488 18 O -0.536 6.536 19 C -0.137 4.137 20 C -0.034 4.034 21 C -0.008 4.008 22 C -0.045 4.045 23 N -0.266 5.266 24 N -0.082 5.082 25 N -0.389 5.389 26 H 0.448 0.552 27 C 0.050 3.950 28 C -0.132 4.132 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.400 0.600 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.192 0.808 46 H 0.073 0.927 47 H 0.029 0.971 48 H 0.064 0.936 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.123 -27.366 5.312 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.364 5.364 10 C 0.067 3.933 11 C -0.160 4.160 12 C -0.064 4.064 13 N -0.257 5.257 14 C -0.083 4.083 15 C -0.011 4.011 16 N -0.381 5.381 17 C 0.298 3.702 18 O -0.412 6.412 19 C -0.178 4.178 20 C -0.074 4.074 21 C -0.142 4.142 22 C -0.202 4.202 23 N -0.132 5.132 24 N -0.062 5.062 25 N -0.110 5.110 26 H 0.294 0.706 27 C -0.078 4.078 28 C -0.173 4.173 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.234 0.766 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.209 0.791 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.083 0.917 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.665 -27.956 6.309 30.942 hybrid contribution 0.645 1.988 -1.027 2.329 sum 12.310 -25.968 5.281 29.219 Atomic orbital electron populations 1.69650 1.05079 1.25722 1.57667 1.24729 0.95490 0.97615 1.03071 0.86293 0.78540 0.83702 0.77794 1.21349 1.21686 1.21313 1.19193 0.90900 0.84218 1.42736 0.91371 1.42409 1.05782 0.99693 1.88541 1.20233 0.94139 0.86139 0.92754 1.21865 0.99655 0.93147 1.01342 1.22059 0.98841 0.98240 0.87241 1.61991 1.44326 1.00650 1.18732 1.22222 0.98056 0.93036 0.94993 1.21592 0.98585 0.83155 0.97738 1.45969 1.60503 1.17861 1.13774 1.20496 0.78188 0.88844 0.82652 1.90765 1.57354 1.55963 1.37148 1.21662 1.02373 0.95289 0.98434 1.19882 1.01675 0.88673 0.97125 1.22323 0.84766 0.99396 1.07744 1.23494 1.01605 0.88176 1.06951 1.75134 0.95363 1.27220 1.15531 1.78331 1.19361 0.90055 1.18477 1.45180 1.09218 1.08854 1.47761 0.70632 1.22314 0.93756 0.92912 0.98830 1.22318 1.00547 0.93259 1.01183 0.93487 0.78232 0.94140 0.91454 0.91229 0.95061 0.91204 0.94577 0.90280 0.90181 0.90742 0.76588 0.87917 0.88813 0.89331 0.87567 0.79077 0.90874 0.95322 0.91704 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -18.02 5.13 -53.30 -0.27 -18.30 16 10 C 0.18 3.46 2.84 -67.81 -0.19 3.27 16 11 C -0.12 -1.96 5.57 -26.65 -0.15 -2.11 16 12 C 0.06 0.81 5.42 -3.83 -0.02 0.79 16 13 N -0.53 -6.56 4.81 -234.67 -1.13 -7.69 16 14 C 0.05 0.40 5.39 -3.82 -0.02 0.38 16 15 C 0.11 1.01 4.92 -4.04 -0.02 0.99 16 16 N -0.73 -4.54 5.56 -60.29 -0.33 -4.87 16 17 C 0.51 3.67 7.83 -10.99 -0.09 3.59 16 18 O -0.54 -6.23 15.98 5.55 0.09 -6.14 16 19 C -0.14 -0.44 5.68 -27.88 -0.16 -0.60 16 20 C -0.03 -0.13 5.07 -27.88 -0.14 -0.27 16 21 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 22 C -0.05 -0.28 11.99 -17.74 -0.21 -0.50 16 23 N -0.27 -2.53 12.41 30.23 0.38 -2.15 16 24 N -0.08 -0.71 13.38 60.35 0.81 0.10 16 25 N -0.39 -1.94 6.98 33.54 0.23 -1.71 16 26 H 0.45 0.68 8.96 -190.40 -1.71 -1.02 16 27 C 0.05 0.69 4.85 -3.84 -0.02 0.67 16 28 C -0.13 -2.34 5.68 -26.65 -0.15 -2.50 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 31 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.07 0.78 6.21 -51.93 -0.32 0.46 16 40 H 0.40 1.31 8.47 -40.82 -0.35 0.96 16 41 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.09 0.35 8.10 -51.93 -0.42 -0.07 16 44 H 0.11 0.45 8.10 -51.93 -0.42 0.03 16 45 H 0.19 0.68 8.06 -52.48 -0.42 0.25 16 46 H 0.07 0.94 5.81 -51.93 -0.30 0.64 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -35.69 398.76 -9.77 -45.46 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -9.29 Total: 3.47 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.95 Total: -4.09 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.41 Total: -62.01 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: 0.09 Total: -6.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.69 -9.77 -45.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724631492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.101 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds