Wall clock time and date at job start Tue Mar 31 2020 19:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99811 * 2 1 4 4 H 1.48493 * 109.47338 * 240.00010 * 3 2 1 5 5 H 1.48506 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46789 * 119.99957 * 3 2 1 7 7 C 1.38812 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00023 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52135 * 205.00076 * 10 9 7 12 12 C 1.53043 * 109.27437 * 182.37926 * 11 10 9 13 13 N 1.46846 * 109.52551 * 59.17623 * 12 11 10 14 14 C 1.46898 * 110.99661 * 174.15911 * 13 12 11 15 15 C 1.53004 * 109.46947 * 170.00175 * 14 13 12 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 C 1.52999 * 109.47004 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.47522 * 179.97438 * 20 19 17 22 22 C 1.35350 * 126.91569 * 274.69018 * 21 20 19 23 23 N 1.33768 * 106.49820 * 179.90140 * 22 21 20 24 24 N 1.28630 * 108.88397 * 0.36627 * 23 22 21 25 25 N 1.28718 * 110.18173 * 359.76619 * 24 23 22 26 26 H 0.96994 * 125.86683 * 180.02562 * 25 24 23 27 27 C 1.46846 * 111.19938 * 298.25992 * 13 12 11 28 28 C 1.53034 * 109.52410 * 61.73922 * 27 13 12 29 29 H 0.96992 * 120.00250 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00184 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.52312 * 325.12593 * 10 9 7 32 32 H 1.09001 * 109.50329 * 62.43831 * 11 10 9 33 33 H 1.09001 * 109.50285 * 302.31368 * 11 10 9 34 34 H 1.08996 * 109.45755 * 299.15893 * 12 11 10 35 35 H 1.09000 * 109.45194 * 179.19440 * 12 11 10 36 36 H 1.08995 * 109.47478 * 50.00657 * 14 13 12 37 37 H 1.09006 * 109.47065 * 290.00054 * 14 13 12 38 38 H 1.09009 * 109.46730 * 59.99875 * 15 14 13 39 39 H 1.08998 * 109.46846 * 300.00419 * 15 14 13 40 40 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 41 41 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 42 42 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 43 43 H 1.09000 * 109.47527 * 299.99994 * 20 19 17 44 44 H 1.09007 * 109.47302 * 59.99534 * 20 19 17 45 45 H 1.08004 * 126.74876 * 0.02829 * 22 21 20 46 46 H 1.08996 * 109.45656 * 181.75824 * 27 13 12 47 47 H 1.08997 * 109.45948 * 301.72420 * 27 13 12 48 48 H 1.08999 * 109.50603 * 180.88028 * 28 27 13 49 49 H 1.09002 * 109.50382 * 60.76068 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0005 11 6 1.1814 -4.7539 -0.6094 12 6 1.9289 -6.0881 -0.5524 13 7 2.2492 -6.4120 0.8436 14 6 2.8441 -7.7510 0.9501 15 6 3.3898 -7.9554 2.3648 16 7 3.9836 -9.2905 2.4709 17 6 4.5260 -9.6960 3.6362 18 8 4.5271 -8.9538 4.5954 19 6 5.1313 -11.0716 3.7471 20 6 5.6726 -11.2780 5.1632 21 6 6.2774 -12.6538 5.2744 22 6 5.6277 -13.8070 5.5574 23 7 6.5513 -14.7746 5.5516 24 7 7.6981 -14.2540 5.2904 25 7 7.5801 -12.9840 5.1170 26 1 8.3011 -12.3694 4.9090 27 6 3.1291 -5.3965 1.4359 28 6 2.4175 -4.0417 1.4383 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.9703 -3.5508 -0.5869 32 1 0.9576 -4.5061 -1.6470 33 1 0.2523 -4.8330 -0.0449 34 1 2.8511 -6.0125 -1.1285 35 1 1.3015 -6.8740 -0.9730 36 1 3.6567 -7.8459 0.2300 37 1 2.0839 -8.5039 0.7416 38 1 2.5771 -7.8605 3.0850 39 1 4.1498 -7.2025 2.5733 40 1 3.9824 -9.8842 1.7038 41 1 4.3693 -11.8220 3.5362 42 1 5.9458 -11.1693 3.0294 43 1 6.4347 -10.5277 5.3738 44 1 4.8584 -11.1802 5.8813 45 1 4.5710 -13.9233 5.7482 46 1 3.3735 -5.6803 2.4595 47 1 4.0457 -5.3242 0.8506 48 1 3.0767 -3.2851 1.8637 49 1 1.5077 -4.1096 2.0349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724631492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:16 Heat of formation + Delta-G solvation = 36.602351 kcal Electronic energy + Delta-G solvation = -27700.084824 eV Core-core repulsion = 23697.918222 eV Total energy + Delta-G solvation = -4002.166602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.28937 -40.86247 -40.04883 -37.14920 -35.76199 -35.39005 -34.15541 -33.97685 -31.95764 -31.57060 -30.92926 -28.93492 -26.40683 -25.57375 -24.61792 -23.98103 -23.43449 -22.63068 -22.11459 -21.30435 -20.72010 -19.23750 -19.09060 -18.08570 -17.50128 -17.01776 -16.92428 -16.73287 -16.20946 -15.99136 -15.69380 -15.44309 -15.35221 -15.23357 -15.11536 -14.70944 -14.50701 -14.15011 -14.01537 -13.87403 -13.30630 -13.10693 -12.98891 -12.84234 -12.74154 -12.64283 -12.47413 -12.28553 -12.21968 -12.19435 -12.03792 -11.78864 -11.75152 -11.59286 -11.49981 -11.17075 -10.97654 -10.83449 -10.15118 -10.06881 -9.24268 -8.98696 -7.93452 -5.21779 0.56186 1.46305 1.49169 1.53763 1.55293 1.67620 1.85285 2.15924 2.56306 3.05191 3.39168 3.48644 3.70195 3.79064 3.83031 3.88621 4.01853 4.04863 4.09913 4.20366 4.22099 4.32831 4.34842 4.37613 4.50524 4.53206 4.56740 4.65385 4.71131 4.75628 4.90323 4.95046 4.98739 5.00919 5.03172 5.06890 5.13115 5.21090 5.22541 5.44551 5.44574 5.49794 5.61655 5.98665 6.11305 6.18474 6.29092 6.58096 7.29696 7.34408 7.43779 8.11921 8.35008 9.29878 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.001476 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.715152 B =18968.564093 C =19541.488144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.114 4.114 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.053 3.947 15 C 0.119 3.881 16 N -0.717 5.717 17 C 0.510 3.490 18 O -0.586 6.586 19 C -0.125 4.125 20 C -0.028 4.028 21 C 0.010 3.990 22 C -0.054 4.054 23 N -0.305 5.305 24 N -0.114 5.114 25 N -0.375 5.375 26 H 0.462 0.538 27 C 0.063 3.937 28 C -0.124 4.124 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.418 0.582 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.214 0.786 46 H 0.082 0.918 47 H 0.036 0.964 48 H 0.043 0.957 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.320 -29.189 4.400 31.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.153 4.153 12 C -0.056 4.056 13 N -0.271 5.271 14 C -0.075 4.075 15 C -0.005 4.005 16 N -0.370 5.370 17 C 0.298 3.702 18 O -0.466 6.466 19 C -0.166 4.166 20 C -0.068 4.068 21 C -0.126 4.126 22 C -0.212 4.212 23 N -0.171 5.171 24 N -0.094 5.094 25 N -0.098 5.098 26 H 0.310 0.690 27 C -0.065 4.065 28 C -0.165 4.165 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.255 0.745 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.231 0.769 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.930 -29.857 5.361 32.975 hybrid contribution 0.269 2.528 -0.732 2.645 sum 13.199 -27.329 4.629 30.700 Atomic orbital electron populations 1.69811 1.06571 1.26019 1.59643 1.25531 0.96345 1.00971 1.03927 0.85253 0.77232 0.79415 0.78121 1.20337 1.22166 1.20620 1.19575 0.91296 0.85417 1.40948 0.90943 1.42640 1.05396 1.01018 1.88664 1.20495 0.94090 0.85215 0.93939 1.21752 0.98941 0.94115 1.00452 1.21988 0.99218 0.96672 0.87673 1.61910 1.44729 1.01877 1.18541 1.22241 0.99143 0.91076 0.95021 1.21327 0.97502 0.84266 0.97443 1.45826 1.59672 1.17074 1.14416 1.21159 0.77354 0.89753 0.81911 1.90754 1.59317 1.57663 1.38848 1.21646 1.03464 0.93027 0.98428 1.19843 1.01501 0.87762 0.97663 1.22392 0.84407 0.99307 1.06449 1.23977 1.02473 0.88023 1.06738 1.75092 0.96231 1.28836 1.16908 1.78273 1.19495 0.91455 1.20148 1.45209 1.09903 1.08247 1.46462 0.68959 1.22095 0.93495 0.91058 0.99886 1.22108 0.99688 0.95466 0.99195 0.94094 0.79677 0.94690 0.91780 0.92365 0.94161 0.88367 0.92744 0.88167 0.92257 0.92428 0.74452 0.85667 0.86513 0.89378 0.87924 0.76922 0.89991 0.94621 0.93816 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 3 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.24 -13.48 9.93 84.03 0.83 -12.64 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -37.65 5.13 -322.56 -1.65 -39.31 16 10 C 0.17 6.71 2.84 45.07 0.13 6.84 16 11 C -0.11 -3.59 5.57 30.65 0.17 -3.42 16 12 C 0.07 1.62 5.42 86.33 0.47 2.09 16 13 N -0.54 -12.11 4.81 -896.37 -4.31 -16.41 16 14 C 0.05 0.73 5.39 86.30 0.46 1.20 16 15 C 0.12 1.87 4.92 86.38 0.43 2.29 16 16 N -0.72 -6.74 5.56 -463.05 -2.57 -9.32 16 17 C 0.51 6.09 7.83 87.66 0.69 6.78 16 18 O -0.59 -13.02 15.98 -3.04 -0.05 -13.07 16 19 C -0.13 -0.38 5.68 29.85 0.17 -0.21 16 20 C -0.03 -0.15 5.07 29.85 0.15 0.01 16 21 C 0.01 0.07 6.56 41.36 0.27 0.34 16 22 C -0.05 -0.60 11.99 83.73 1.00 0.41 16 23 N -0.30 -5.60 12.41 -58.26 -0.72 -6.33 16 24 N -0.11 -1.90 13.38 37.02 0.50 -1.40 16 25 N -0.37 -3.15 6.98 -47.79 -0.33 -3.48 16 26 H 0.46 0.59 8.96 -219.96 -1.97 -1.38 16 27 C 0.06 1.65 4.85 86.32 0.42 2.07 16 28 C -0.12 -4.45 5.68 30.64 0.17 -4.27 16 29 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.37 20.46 7.80 -92.70 -0.72 19.74 16 31 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 1.72 8.12 -2.39 -0.02 1.70 16 36 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 37 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.06 1.11 6.21 -2.39 -0.01 1.10 16 40 H 0.42 0.97 8.47 -92.71 -0.79 0.18 16 41 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 44 H 0.10 0.69 8.10 -2.38 -0.02 0.67 16 45 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.08 2.03 5.81 -2.39 -0.01 2.02 16 47 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -80.30 398.76 -3.50 -83.80 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -2.50 Total: 19.11 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.83 Total: -2.43 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -8.81 Total: -135.83 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.05 Total: -13.07 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -80.30 -3.50 -83.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724631492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.398 kcal (2) G-P(sol) polarization free energy of solvation -80.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds