Wall clock time and date at job start Tue Mar 31 2020 19:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47331 * 2 1 4 4 C 1.53001 * 109.47475 * 240.00114 * 2 1 3 5 5 N 1.46501 * 109.46893 * 119.99923 * 2 1 3 6 6 N 1.28780 * 125.45339 * 359.97438 * 5 2 1 7 7 N 1.28992 * 108.73140 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35533 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.55198 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47189 * 90.02478 * 9 8 7 11 11 O 1.21284 * 120.00115 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00047 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00206 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47394 * 185.30422 * 13 12 10 15 15 N 1.46502 * 112.84934 * 46.42736 * 14 13 12 16 16 C 1.36939 * 119.99635 * 65.60483 * 15 14 13 17 17 H 1.08006 * 120.00114 * 354.33583 * 16 15 14 18 18 C 1.38816 * 119.99827 * 174.34609 * 16 15 14 19 19 N 1.31621 * 119.99759 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00098 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46504 * 90.00300 * 20 18 16 22 22 H 1.48495 * 109.46942 * 210.00388 * 20 18 16 23 23 H 1.48499 * 109.46986 * 330.00598 * 20 18 16 24 24 C 1.53782 * 113.61290 * 275.12320 * 14 13 12 25 25 C 1.53784 * 87.08196 * 220.01649 * 24 14 13 26 26 C 1.53779 * 113.61580 * 177.62950 * 14 13 12 27 27 N 1.28893 * 125.44947 * 180.31194 * 5 2 1 28 28 H 1.09002 * 109.47199 * 300.00111 * 1 2 3 29 29 H 1.09006 * 109.46892 * 59.99870 * 1 2 3 30 30 H 1.09000 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47186 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47269 * 300.00291 * 3 2 1 33 33 H 1.09002 * 109.47070 * 59.99810 * 3 2 1 34 34 H 1.09005 * 109.46994 * 300.00003 * 4 2 1 35 35 H 1.08993 * 109.47260 * 59.99477 * 4 2 1 36 36 H 1.08999 * 109.47246 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47050 * 330.02307 * 9 8 7 38 38 H 1.08996 * 109.47010 * 210.02176 * 9 8 7 39 39 H 0.97000 * 120.00298 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46699 * 65.30200 * 13 12 10 41 41 H 1.08998 * 109.46968 * 305.30682 * 13 12 10 42 42 H 0.96992 * 120.00093 * 245.60006 * 15 14 13 43 43 H 0.97001 * 119.99564 * 179.97438 * 19 18 16 44 44 H 1.08990 * 113.61743 * 334.56730 * 24 14 13 45 45 H 1.09005 * 113.61261 * 105.47578 * 24 14 13 46 46 H 1.08999 * 113.61698 * 270.88439 * 25 24 14 47 47 H 1.08999 * 113.61212 * 139.98239 * 25 24 14 48 48 H 1.09005 * 113.60880 * 254.53147 * 26 14 13 49 49 H 1.08994 * 113.61723 * 25.42653 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0182 -0.6906 1.1962 6 7 1.2782 -1.2171 2.1091 7 7 2.0398 -1.7373 3.0109 8 6 3.3016 -1.5218 2.6383 9 6 4.5419 -1.9499 3.3796 10 6 4.9559 -3.3225 2.9156 11 8 4.3079 -3.8966 2.0661 12 7 6.0468 -3.9118 3.4437 13 6 6.4490 -5.2466 2.9930 14 6 7.6281 -5.7358 3.8362 15 7 7.4262 -5.5267 5.2721 16 6 6.4341 -6.2040 5.9297 17 1 5.7428 -6.8215 5.3754 18 6 6.3169 -6.0966 7.3088 19 7 5.3637 -6.7479 7.9409 20 14 7.5128 -5.0288 8.2675 21 1 6.9758 -3.6476 8.3634 22 1 7.6902 -5.5869 9.6321 23 1 8.8230 -5.0031 7.5689 24 6 8.9944 -5.2473 3.3268 25 6 9.5319 -6.6490 3.6605 26 6 8.0921 -7.1580 3.4800 27 7 3.2573 -0.8631 1.5064 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 4.3352 -1.9750 4.4496 38 1 5.3462 -1.2415 3.1815 39 1 6.5653 -3.4526 4.1228 40 1 6.7454 -5.2021 1.9450 41 1 5.6117 -5.9354 3.1048 42 1 7.9952 -4.9087 5.7570 43 1 5.2820 -6.6731 8.9045 44 1 9.0064 -5.0173 2.2615 45 1 9.4303 -4.4560 3.9368 46 1 9.9035 -6.7427 4.6809 47 1 10.2287 -7.0376 2.9178 48 1 7.7993 -7.9093 4.2136 49 1 7.8573 -7.4504 2.4566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724784412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:15 Heat of formation + Delta-G solvation = 122.935425 kcal Electronic energy + Delta-G solvation = -29547.474495 eV Core-core repulsion = 25549.051576 eV Total energy + Delta-G solvation = -3998.422919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.25844 -39.59161 -38.55334 -37.80425 -33.97977 -33.47451 -33.23584 -33.11853 -30.60499 -29.76349 -27.98123 -27.92592 -27.01446 -25.32595 -24.56841 -23.67943 -22.62838 -21.49427 -20.71262 -20.01722 -18.32496 -17.67835 -17.40490 -17.23208 -16.53917 -15.95162 -15.18858 -15.02035 -14.63521 -14.56999 -14.29424 -14.28199 -14.12092 -13.63584 -13.41204 -13.34495 -12.99044 -12.90140 -12.75083 -12.73138 -12.57886 -12.27576 -12.07207 -11.90977 -11.86764 -11.72914 -11.45315 -11.39724 -11.24009 -10.90091 -10.81424 -10.74096 -10.45174 -10.26151 -10.19470 -10.16051 -9.66598 -9.56137 -9.43371 -8.91936 -8.50034 -7.36641 -5.79718 -3.18642 1.33501 1.82153 2.26230 3.00479 3.31847 3.33543 3.41780 3.56947 3.81636 4.12472 4.13691 4.23038 4.53629 4.57874 4.95722 4.97930 4.98961 5.04735 5.06512 5.08965 5.15581 5.19637 5.22141 5.23642 5.28484 5.37153 5.42468 5.50552 5.53898 5.65203 5.66200 5.69024 5.82515 5.95453 5.98631 6.03980 6.11293 6.21704 6.24504 6.28375 6.47747 6.66017 6.79575 6.88610 7.02003 7.95925 7.97669 8.38484 8.50325 8.62925 9.14788 9.85892 10.03677 11.38041 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.002726 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.286920 B =10270.798983 C =11284.653212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 C -0.157 4.157 4 C -0.158 4.158 5 N -0.134 5.134 6 N -0.065 5.065 7 N -0.272 5.272 8 C 0.193 3.807 9 C -0.047 4.047 10 C 0.520 3.480 11 O -0.547 6.547 12 N -0.698 5.698 13 C 0.125 3.875 14 C 0.178 3.822 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.091 0.909 18 C 0.010 3.990 19 N -0.928 5.928 20 Si 0.879 3.121 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.276 1.276 24 C -0.145 4.145 25 C -0.131 4.131 26 C -0.148 4.148 27 N -0.299 5.299 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.402 0.598 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 16.561 -17.847 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.099 3.901 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.047 5.047 6 N -0.058 5.058 7 N -0.142 5.142 8 C -0.090 4.090 9 C -0.090 4.090 10 C 0.303 3.697 11 O -0.425 6.425 12 N -0.348 5.348 13 C -0.001 4.001 14 C 0.086 3.914 15 N -0.367 5.367 16 C -0.369 4.369 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.575 5.575 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.202 1.202 24 C -0.183 4.183 25 C -0.169 4.169 26 C -0.188 4.188 27 N -0.149 5.149 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.237 0.763 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.197 0.803 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.409 16.068 -18.504 24.625 hybrid contribution 1.494 0.759 1.393 2.179 sum -0.915 16.827 -17.112 24.016 Atomic orbital electron populations 1.22080 0.90224 1.04695 1.04062 1.21317 0.96360 0.92574 0.79894 1.22217 1.03262 0.92242 1.03834 1.22224 1.03344 1.01231 0.94891 1.50378 1.01225 1.35125 1.18019 1.78894 1.22068 1.09248 0.95544 1.75857 1.00842 1.17596 1.19952 1.24624 0.94899 0.97991 0.91503 1.19892 0.91676 0.96225 1.01214 1.19964 0.80745 0.86829 0.82131 1.90695 1.53349 1.65587 1.32827 1.45578 1.28018 1.18934 1.42269 1.21757 0.98810 0.83177 0.96345 1.20767 0.90508 0.94776 0.85378 1.42410 1.39699 1.51800 1.02749 1.18917 1.05341 1.22657 0.90024 0.89122 1.24677 0.98156 0.99684 0.96155 1.69698 1.34021 1.45433 1.08336 0.86646 0.81439 0.80773 0.80219 1.21056 1.21845 1.20242 1.23243 0.97101 0.97401 1.00590 1.22657 0.96671 0.96280 1.01262 1.23275 0.95761 0.98892 1.00888 1.74505 1.03194 1.20902 1.16312 0.90635 0.89430 0.90533 0.90455 0.89341 0.91474 0.91269 0.89393 0.90434 0.85434 0.86333 0.76334 0.92611 0.91322 0.80342 0.92991 0.90078 0.91887 0.90242 0.92514 0.90168 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.91 37.16 0.29 -0.74 16 2 C 0.18 1.54 1.30 -131.82 -0.17 1.37 16 3 C -0.16 -0.99 8.66 37.16 0.32 -0.67 16 4 C -0.16 -1.20 8.67 37.16 0.32 -0.87 16 5 N -0.13 -1.80 3.73 0.48 0.00 -1.79 16 6 N -0.06 -1.03 12.24 60.35 0.74 -0.30 16 7 N -0.27 -4.91 12.50 32.45 0.41 -4.50 16 8 C 0.19 3.15 6.86 -156.62 -1.07 2.07 16 9 C -0.05 -0.66 6.33 -29.04 -0.18 -0.84 16 10 C 0.52 9.10 7.82 -10.99 -0.09 9.01 16 11 O -0.55 -11.76 16.03 5.55 0.09 -11.67 16 12 N -0.70 -11.58 5.37 -60.30 -0.32 -11.90 16 13 C 0.13 2.21 5.05 -4.04 -0.02 2.19 16 14 C 0.18 3.08 0.94 -131.01 -0.12 2.96 16 15 N -0.72 -15.17 4.28 -46.48 -0.20 -15.37 16 16 C -0.24 -6.27 9.75 -15.06 -0.15 -6.42 16 17 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 19 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 20 Si 0.88 20.79 27.68 -169.99 -4.71 16.08 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.08 6.61 56.52 0.37 -5.71 16 24 C -0.15 -2.04 7.37 -25.92 -0.19 -2.23 16 25 C -0.13 -1.92 7.99 -25.92 -0.21 -2.13 16 26 C -0.15 -2.47 7.28 -25.92 -0.19 -2.66 16 27 N -0.30 -4.45 11.83 32.47 0.38 -4.06 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.40 6.03 8.04 -40.82 -0.33 5.70 16 40 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 41 H 0.07 1.44 8.13 -51.93 -0.42 1.01 16 42 H 0.36 7.42 5.80 -40.82 -0.24 7.18 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.08 1.00 7.93 -51.93 -0.41 0.58 16 45 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.56 7.85 -51.93 -0.41 1.15 16 49 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 403.92 15.07 6.09 6.09 Total: -1.00 -35.63 403.92 -6.44 -42.07 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -8.14 Total: 11.81 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.55 Total: 1.21 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: 1.78 Total: -65.59 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.08 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.63 -6.44 -42.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724784412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.003 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds