Wall clock time and date at job start Tue Mar 31 2020 19:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47331 * 2 1 4 4 C 1.53001 * 109.47475 * 240.00114 * 2 1 3 5 5 N 1.46501 * 109.46893 * 119.99923 * 2 1 3 6 6 N 1.28780 * 125.45339 * 359.97438 * 5 2 1 7 7 N 1.28992 * 108.73140 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35533 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.55198 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47189 * 90.02478 * 9 8 7 11 11 O 1.21284 * 120.00115 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00047 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00206 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47394 * 185.30422 * 13 12 10 15 15 N 1.46502 * 112.84934 * 46.42736 * 14 13 12 16 16 C 1.36939 * 119.99635 * 65.60483 * 15 14 13 17 17 H 1.08006 * 120.00114 * 354.33583 * 16 15 14 18 18 C 1.38816 * 119.99827 * 174.34609 * 16 15 14 19 19 N 1.31621 * 119.99759 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00098 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46504 * 90.00300 * 20 18 16 22 22 H 1.48495 * 109.46942 * 210.00388 * 20 18 16 23 23 H 1.48499 * 109.46986 * 330.00598 * 20 18 16 24 24 C 1.53782 * 113.61290 * 275.12320 * 14 13 12 25 25 C 1.53784 * 87.08196 * 220.01649 * 24 14 13 26 26 C 1.53779 * 113.61580 * 177.62950 * 14 13 12 27 27 N 1.28893 * 125.44947 * 180.31194 * 5 2 1 28 28 H 1.09002 * 109.47199 * 300.00111 * 1 2 3 29 29 H 1.09006 * 109.46892 * 59.99870 * 1 2 3 30 30 H 1.09000 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47186 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47269 * 300.00291 * 3 2 1 33 33 H 1.09002 * 109.47070 * 59.99810 * 3 2 1 34 34 H 1.09005 * 109.46994 * 300.00003 * 4 2 1 35 35 H 1.08993 * 109.47260 * 59.99477 * 4 2 1 36 36 H 1.08999 * 109.47246 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47050 * 330.02307 * 9 8 7 38 38 H 1.08996 * 109.47010 * 210.02176 * 9 8 7 39 39 H 0.97000 * 120.00298 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46699 * 65.30200 * 13 12 10 41 41 H 1.08998 * 109.46968 * 305.30682 * 13 12 10 42 42 H 0.96992 * 120.00093 * 245.60006 * 15 14 13 43 43 H 0.97001 * 119.99564 * 179.97438 * 19 18 16 44 44 H 1.08990 * 113.61743 * 334.56730 * 24 14 13 45 45 H 1.09005 * 113.61261 * 105.47578 * 24 14 13 46 46 H 1.08999 * 113.61698 * 270.88439 * 25 24 14 47 47 H 1.08999 * 113.61212 * 139.98239 * 25 24 14 48 48 H 1.09005 * 113.60880 * 254.53147 * 26 14 13 49 49 H 1.08994 * 113.61723 * 25.42653 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0182 -0.6906 1.1962 6 7 1.2782 -1.2171 2.1091 7 7 2.0398 -1.7373 3.0109 8 6 3.3016 -1.5218 2.6383 9 6 4.5419 -1.9499 3.3796 10 6 4.9559 -3.3225 2.9156 11 8 4.3079 -3.8966 2.0661 12 7 6.0468 -3.9118 3.4437 13 6 6.4490 -5.2466 2.9930 14 6 7.6281 -5.7358 3.8362 15 7 7.4262 -5.5267 5.2721 16 6 6.4341 -6.2040 5.9297 17 1 5.7428 -6.8215 5.3754 18 6 6.3169 -6.0966 7.3088 19 7 5.3637 -6.7479 7.9409 20 14 7.5128 -5.0288 8.2675 21 1 6.9758 -3.6476 8.3634 22 1 7.6902 -5.5869 9.6321 23 1 8.8230 -5.0031 7.5689 24 6 8.9944 -5.2473 3.3268 25 6 9.5319 -6.6490 3.6605 26 6 8.0921 -7.1580 3.4800 27 7 3.2573 -0.8631 1.5064 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 4.3352 -1.9750 4.4496 38 1 5.3462 -1.2415 3.1815 39 1 6.5653 -3.4526 4.1228 40 1 6.7454 -5.2021 1.9450 41 1 5.6117 -5.9354 3.1048 42 1 7.9952 -4.9087 5.7570 43 1 5.2820 -6.6731 8.9045 44 1 9.0064 -5.0173 2.2615 45 1 9.4303 -4.4560 3.9368 46 1 9.9035 -6.7427 4.6809 47 1 10.2287 -7.0376 2.9178 48 1 7.7993 -7.9093 4.2136 49 1 7.8573 -7.4504 2.4566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724784412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:14 Heat of formation + Delta-G solvation = 95.934512 kcal Electronic energy + Delta-G solvation = -29548.645343 eV Core-core repulsion = 25549.051576 eV Total energy + Delta-G solvation = -3999.593767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.39642 -41.00722 -39.93382 -38.58893 -35.44892 -35.13154 -34.65849 -34.17395 -32.52939 -30.97963 -28.72199 -28.51735 -28.20071 -26.65270 -25.64916 -25.48826 -23.91322 -22.81508 -21.67682 -21.36789 -19.91286 -19.53828 -18.63657 -18.08122 -17.75535 -17.29875 -16.57696 -16.42600 -16.12106 -15.69349 -15.47681 -15.22775 -15.17787 -14.84091 -14.78264 -14.66085 -14.39344 -14.23184 -13.91197 -13.44056 -13.25483 -13.23227 -13.13849 -13.07693 -12.94496 -12.86436 -12.85458 -12.56946 -12.53258 -12.15845 -12.08622 -11.95688 -11.86621 -11.77806 -11.65941 -11.51288 -11.35812 -10.99298 -10.89479 -10.70241 -9.96413 -9.28824 -7.95459 -5.31642 0.20327 0.92600 1.04355 1.42012 1.46977 1.54299 1.62441 2.30830 2.53912 2.81133 3.16594 3.32732 3.49086 3.52304 3.58585 3.66381 3.74463 3.83695 3.97501 4.06027 4.17374 4.22101 4.40005 4.45701 4.50321 4.52709 4.60289 4.62322 4.67744 4.71289 4.72458 4.76244 4.77542 4.88907 4.93804 4.99907 5.01407 5.11405 5.15378 5.21403 5.33074 5.36096 5.39506 5.52631 5.67597 5.88745 6.27605 6.61548 7.14017 7.27163 7.32554 7.86255 8.07451 9.26474 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.002726 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.286920 B =10270.798983 C =11284.653212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 C -0.151 4.151 4 C -0.154 4.154 5 N -0.118 5.118 6 N -0.080 5.080 7 N -0.316 5.316 8 C 0.177 3.823 9 C -0.041 4.041 10 C 0.516 3.484 11 O -0.593 6.593 12 N -0.691 5.691 13 C 0.132 3.868 14 C 0.162 3.838 15 N -0.720 5.720 16 C -0.209 4.209 17 H 0.042 0.958 18 C -0.066 4.066 19 N -0.989 5.989 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.309 1.309 23 H -0.243 1.243 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.155 4.155 27 N -0.298 5.298 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.138 0.862 38 H 0.162 0.838 39 H 0.413 0.587 40 H 0.077 0.923 41 H 0.021 0.979 42 H 0.372 0.628 43 H 0.255 0.745 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 19.919 -20.041 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.209 4.209 4 C -0.213 4.213 5 N -0.034 5.034 6 N -0.072 5.072 7 N -0.186 5.186 8 C -0.106 4.106 9 C -0.083 4.083 10 C 0.302 3.698 11 O -0.474 6.474 12 N -0.341 5.341 13 C 0.006 3.994 14 C 0.071 3.929 15 N -0.363 5.363 16 C -0.340 4.340 17 H 0.060 0.940 18 C -0.257 4.257 19 N -0.640 5.640 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.236 1.236 23 H -0.167 1.167 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.195 4.195 27 N -0.149 5.149 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.180 0.820 39 H 0.249 0.751 40 H 0.095 0.905 41 H 0.040 0.960 42 H 0.206 0.794 43 H 0.063 0.937 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.059 0.941 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.288 19.457 -20.738 28.438 hybrid contribution 0.562 -0.343 1.849 1.963 sum 0.851 19.114 -18.889 26.886 Atomic orbital electron populations 1.22141 0.88836 1.04077 1.05709 1.22056 0.97637 0.93719 0.78504 1.22245 1.02721 0.90475 1.05451 1.22261 1.02534 1.00513 0.95970 1.51020 1.00693 1.33493 1.18232 1.78799 1.22302 1.09985 0.96123 1.75802 1.01969 1.19252 1.21580 1.25018 0.95064 0.98396 0.92146 1.20000 0.92240 0.94752 1.01297 1.20574 0.80115 0.87868 0.81283 1.90673 1.54695 1.67028 1.35044 1.45536 1.27983 1.18370 1.42223 1.21637 0.97203 0.82868 0.97730 1.21092 0.92541 0.96086 0.83214 1.42243 1.38475 1.51317 1.04306 1.18664 1.04871 1.20707 0.89793 0.93961 1.25535 1.00596 1.02128 0.97431 1.69925 1.37138 1.48624 1.08264 0.85414 0.80172 0.78673 0.77495 1.19775 1.23644 1.16679 1.23185 0.93033 0.97357 1.02365 1.22605 0.95389 0.96538 1.01458 1.23336 0.97970 0.97297 1.00899 1.74464 1.03928 1.20780 1.15743 0.91300 0.85418 0.92285 0.91268 0.85512 0.92028 0.93354 0.85246 0.91644 0.84454 0.82015 0.75075 0.90497 0.96022 0.79364 0.93672 0.87228 0.90234 0.91629 0.89531 0.94149 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 7.91 71.98 0.57 -1.22 16 2 C 0.16 2.49 1.30 3.60 0.00 2.50 16 3 C -0.15 -1.51 8.66 71.98 0.62 -0.88 16 4 C -0.15 -2.07 8.67 71.98 0.62 -1.45 16 5 N -0.12 -3.15 3.73 -152.40 -0.57 -3.72 16 6 N -0.08 -2.62 12.24 37.02 0.45 -2.17 16 7 N -0.32 -11.80 12.50 -51.26 -0.64 -12.44 16 8 C 0.18 5.78 6.86 138.55 0.95 6.74 16 9 C -0.04 -1.10 6.33 29.10 0.18 -0.91 16 10 C 0.52 18.02 7.82 87.66 0.69 18.70 16 11 O -0.59 -26.24 16.03 -3.04 -0.05 -26.29 16 12 N -0.69 -22.33 5.37 -463.07 -2.49 -24.81 16 13 C 0.13 4.64 5.05 86.38 0.44 5.07 16 14 C 0.16 5.38 0.94 4.13 0.00 5.38 16 15 N -0.72 -29.54 4.28 -300.96 -1.29 -30.83 16 16 C -0.21 -11.30 9.75 84.03 0.82 -10.48 16 17 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 18 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 19 N -0.99 -63.56 13.97 21.65 0.30 -63.25 16 20 Si 0.96 42.97 27.68 68.60 1.90 44.87 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.31 -14.73 7.11 99.48 0.71 -14.02 16 23 H -0.24 -9.45 6.61 99.48 0.66 -8.80 16 24 C -0.12 -2.88 7.37 31.12 0.23 -2.65 16 25 C -0.12 -3.18 7.99 31.12 0.25 -2.93 16 26 C -0.16 -5.06 7.28 31.12 0.23 -4.83 16 27 N -0.30 -8.75 11.83 -51.20 -0.61 -9.36 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.16 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.41 11.49 8.04 -92.71 -0.75 10.75 16 40 H 0.08 2.38 7.89 -2.39 -0.02 2.36 16 41 H 0.02 0.95 8.13 -2.39 -0.02 0.93 16 42 H 0.37 14.12 5.80 -92.71 -0.54 13.58 16 43 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.11 2.07 7.93 -2.39 -0.02 2.05 16 45 H 0.08 1.70 8.10 -2.38 -0.02 1.68 16 46 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.04 1.62 7.85 -2.38 -0.02 1.60 16 49 H 0.09 2.57 8.10 -2.39 -0.02 2.55 16 Total: -1.00 -85.25 403.92 2.72 -82.53 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.37 Total: 35.75 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.07 Total: 9.72 kcal Atomic # 7 Polarization: -141.75 SS G_CDS: -4.83 Total: -146.58 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Total: -85.25 2.72 -82.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724784412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.464 kcal (2) G-P(sol) polarization free energy of solvation -85.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds