Wall clock time and date at job start Tue Mar 31 2020 19:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00162 * 2 1 4 4 H 1.48501 * 109.46752 * 271.97603 * 3 2 1 5 5 H 1.48495 * 109.47034 * 31.97310 * 3 2 1 6 6 H 1.48498 * 109.47116 * 151.97852 * 3 2 1 7 7 C 1.38811 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 339.44933 * 7 2 1 9 9 N 1.36941 * 120.00232 * 159.44001 * 7 2 1 10 10 C 1.47078 * 120.87830 * 333.51752 * 9 7 2 11 11 C 1.53247 * 108.51856 * 231.15996 * 10 9 7 12 12 N 1.46894 * 109.33607 * 306.16930 * 11 10 9 13 13 C 1.46900 * 110.99927 * 187.25585 * 12 11 10 14 14 C 1.52997 * 109.47641 * 170.00013 * 13 12 11 15 15 C 1.52993 * 109.47389 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47261 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.47261 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.47494 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00534 * 179.97438 * 18 17 16 20 20 O 1.21620 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.47236 * 120.00291 * 179.97438 * 19 18 17 22 22 C 1.36998 * 127.19099 * 179.97438 * 21 19 18 23 23 N 1.33325 * 106.37231 * 180.02562 * 22 21 19 24 24 N 1.28507 * 109.43679 * 0.02562 * 23 22 21 25 25 N 1.28713 * 110.64323 * 359.97438 * 24 23 22 26 26 H 0.96992 * 126.03509 * 179.97438 * 25 24 23 27 27 C 1.46900 * 111.27027 * 63.10977 * 12 11 10 28 28 C 1.47074 * 120.88165 * 153.49013 * 9 7 2 29 29 H 0.97002 * 119.99826 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.63173 * 111.45051 * 10 9 7 31 31 H 1.09002 * 109.79332 * 350.95918 * 10 9 7 32 32 H 1.09001 * 109.49143 * 186.21040 * 11 10 9 33 33 H 1.08999 * 109.49356 * 66.12942 * 11 10 9 34 34 H 1.09000 * 109.47278 * 49.99829 * 13 12 11 35 35 H 1.09004 * 109.46999 * 290.00053 * 13 12 11 36 36 H 1.09006 * 109.46779 * 60.00005 * 14 13 12 37 37 H 1.08995 * 109.47092 * 300.00202 * 14 13 12 38 38 H 1.08994 * 109.47339 * 60.00428 * 15 14 13 39 39 H 1.09001 * 109.47350 * 299.99545 * 15 14 13 40 40 H 1.09006 * 109.46897 * 60.00220 * 16 15 14 41 41 H 1.08995 * 109.47103 * 300.00338 * 16 15 14 42 42 H 1.09000 * 109.47234 * 59.99932 * 17 16 15 43 43 H 1.09004 * 109.47295 * 300.00001 * 17 16 15 44 44 H 0.97003 * 119.99449 * 359.97438 * 18 17 16 45 45 H 1.08006 * 126.81356 * 0.02562 * 22 21 19 46 46 H 1.08992 * 109.49341 * 56.84925 * 27 12 11 47 47 H 1.09003 * 109.49373 * 176.93683 * 27 12 11 48 48 H 1.09005 * 109.62479 * 248.55079 * 28 9 7 49 49 H 1.08999 * 109.63090 * 9.13200 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4559 2.0705 -1.3993 5 1 1.4692 2.6402 0.7413 6 1 3.5680 1.4284 0.6577 7 6 2.0102 -1.2022 0.0005 8 1 1.5217 -2.1075 0.3293 9 7 3.3142 -1.2402 -0.4159 10 6 3.8307 -0.2484 -1.3714 11 6 4.5271 -0.9921 -2.5161 12 7 5.5361 -1.9040 -1.9610 13 6 6.3438 -2.5084 -3.0288 14 6 7.5324 -3.2488 -2.4125 15 6 8.3732 -3.8788 -3.5246 16 6 9.5615 -4.6197 -2.9082 17 6 10.4020 -5.2502 -4.0203 18 7 11.5395 -5.9602 -3.4301 19 6 12.4220 -6.5974 -4.2246 20 8 12.2745 -6.5827 -5.4318 21 6 13.5655 -7.3104 -3.6314 22 6 14.5443 -8.0026 -4.2946 23 7 15.3661 -8.4802 -3.3597 24 7 14.9464 -8.1232 -2.1987 25 7 13.8725 -7.4212 -2.3005 26 1 13.3691 -7.0386 -1.5650 27 6 4.9159 -2.9374 -1.1210 28 6 4.2354 -2.2734 0.0808 29 1 -0.4850 0.8401 -0.0004 30 1 4.5453 0.4047 -0.8708 31 1 3.0073 0.3455 -1.7681 32 1 5.0112 -0.2723 -3.1761 33 1 3.7902 -1.5645 -3.0795 34 1 6.7086 -1.7267 -3.6952 35 1 5.7315 -3.2111 -3.5940 36 1 7.1676 -4.0305 -1.7461 37 1 8.1447 -2.5461 -1.8473 38 1 8.7380 -3.0974 -4.1912 39 1 7.7607 -4.5816 -4.0894 40 1 9.1963 -5.4012 -2.2418 41 1 10.1741 -3.9173 -2.3431 42 1 10.7671 -4.4691 -4.6871 43 1 9.7891 -5.9528 -4.5850 44 1 11.6573 -5.9716 -2.4673 45 1 14.6326 -8.1350 -5.3629 46 1 4.1736 -3.4826 -1.7038 47 1 5.6821 -3.6283 -0.7692 48 1 4.9890 -1.8148 0.7211 49 1 3.6776 -3.0210 0.6447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725015448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:21 Heat of formation + Delta-G solvation = 83.836889 kcal Electronic energy + Delta-G solvation = -27642.456115 eV Core-core repulsion = 23642.337756 eV Total energy + Delta-G solvation = -4000.118359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.99378 -40.21844 -38.61249 -36.87582 -35.38355 -34.36490 -33.66983 -32.16196 -31.60695 -30.57865 -29.98236 -27.22171 -25.50634 -24.35384 -23.59108 -23.33036 -22.50062 -21.94293 -21.62194 -20.94046 -19.84167 -19.42685 -17.35016 -17.09076 -16.90586 -16.69147 -16.45754 -15.59719 -15.46902 -15.06557 -14.89294 -14.67736 -14.49664 -14.26181 -14.04723 -14.00525 -13.35120 -13.01183 -12.84570 -12.73133 -12.44332 -12.30582 -12.09707 -11.92948 -11.73510 -11.43003 -11.42012 -11.34872 -11.31997 -10.97043 -10.83352 -10.82544 -10.46560 -10.32150 -10.23272 -10.08218 -9.84405 -9.80206 -9.47503 -8.66938 -8.02130 -6.97916 -5.96500 -3.31721 0.21130 1.66213 1.74257 2.23410 2.39680 3.30598 3.47629 3.51923 3.63983 3.96842 4.03006 4.29150 4.40744 4.42716 4.50132 4.51984 4.62302 4.87471 4.95809 5.05048 5.14523 5.23549 5.28871 5.33629 5.35824 5.45078 5.56558 5.57827 5.63485 5.69285 5.72344 5.76297 5.88205 5.93142 5.96047 6.03954 6.10448 6.14155 6.23306 6.38255 6.55234 6.56724 6.62566 6.85500 7.27720 7.41908 7.44728 7.60611 7.92587 8.30644 8.91412 9.70214 10.09698 11.19544 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.034547 B = 0.001425 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.292965 B =19639.406657 C =19942.310873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.608 5.608 10 C 0.130 3.870 11 C 0.044 3.956 12 N -0.536 5.536 13 C 0.054 3.946 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.117 3.883 18 N -0.724 5.724 19 C 0.595 3.405 20 O -0.510 6.510 21 C -0.069 4.069 22 C 0.036 3.964 23 N -0.268 5.268 24 N -0.043 5.043 25 N -0.375 5.375 26 H 0.451 0.549 27 C 0.040 3.960 28 C 0.152 3.848 29 H 0.262 0.738 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.396 0.604 45 H 0.206 0.794 46 H 0.031 0.969 47 H 0.067 0.933 48 H 0.029 0.971 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.480 -12.870 -7.157 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.086 4.086 12 N -0.261 5.261 13 C -0.074 4.074 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.169 4.169 17 C -0.005 4.005 18 N -0.376 5.376 19 C 0.378 3.622 20 O -0.383 6.383 21 C -0.203 4.203 22 C -0.123 4.123 23 N -0.133 5.133 24 N -0.025 5.025 25 N -0.102 5.102 26 H 0.298 0.702 27 C -0.089 4.089 28 C 0.025 3.975 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.230 0.770 45 H 0.223 0.777 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 27.561 -13.143 -6.892 31.302 hybrid contribution -1.233 1.248 -0.258 1.773 sum 26.329 -11.895 -7.150 29.762 Atomic orbital electron populations 1.69836 1.05724 1.26553 1.53161 1.25258 0.95238 0.97607 0.99571 0.86940 0.79975 0.84536 0.77066 1.21647 1.23163 1.19496 1.18933 0.84827 0.94816 1.40236 0.89721 1.44402 1.08491 1.32249 1.48127 1.21423 0.96490 0.91976 0.89716 1.22625 0.92844 0.95504 0.97608 1.61938 1.24409 1.18936 1.20800 1.22095 0.94461 0.97438 0.93442 1.21581 0.96408 0.99642 0.97599 1.21458 0.95683 0.99659 0.98545 1.21823 0.97220 1.00274 0.97600 1.21575 0.86129 0.96299 0.96526 1.45930 1.27489 1.54241 1.09952 1.16741 0.80449 0.78528 0.86488 1.90906 1.73947 1.60350 1.13094 1.22394 1.03068 1.10484 0.84400 1.23983 0.90462 0.96060 1.01833 1.75051 1.23871 1.19849 0.94574 1.78269 0.97591 1.07195 1.19445 1.45623 1.20181 1.36419 1.07981 0.70220 1.22675 0.96669 0.93236 0.96334 1.21006 0.92026 0.91578 0.92861 0.92779 0.95009 0.90790 0.91731 0.94714 0.91311 0.95387 0.91761 0.91106 0.91451 0.91606 0.91059 0.90986 0.90623 0.90641 0.76988 0.77722 0.95065 0.91445 0.95301 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.82 13.97 55.49 0.78 -27.04 16 2 C 0.02 0.64 5.24 -17.43 -0.09 0.54 16 3 Si 0.88 22.37 24.31 -169.99 -4.13 18.24 16 4 H -0.29 -7.00 6.58 56.52 0.37 -6.63 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.77 6.61 56.52 0.37 -6.39 16 7 C -0.26 -7.27 10.08 -15.06 -0.15 -7.42 16 8 H 0.09 2.52 8.05 -52.49 -0.42 2.09 16 9 N -0.61 -14.52 2.82 -172.01 -0.48 -15.01 16 10 C 0.13 2.85 4.35 -3.60 -0.02 2.83 16 11 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 12 N -0.54 -8.43 4.63 -234.32 -1.08 -9.51 16 13 C 0.05 0.64 4.96 -3.83 -0.02 0.62 16 14 C -0.11 -1.01 5.15 -26.74 -0.14 -1.14 16 15 C -0.11 -0.71 5.21 -26.73 -0.14 -0.85 16 16 C -0.13 -0.55 5.33 -26.73 -0.14 -0.69 16 17 C 0.12 0.57 5.67 -4.04 -0.02 0.54 16 18 N -0.72 -2.85 5.55 -61.45 -0.34 -3.19 16 19 C 0.59 3.90 7.81 -12.61 -0.10 3.80 16 20 O -0.51 -5.24 16.92 5.26 0.09 -5.15 16 21 C -0.07 -0.40 7.17 -82.33 -0.59 -0.98 16 22 C 0.04 0.25 11.87 -17.35 -0.21 0.04 16 23 N -0.27 -2.32 12.35 30.47 0.38 -1.94 16 24 N -0.04 -0.31 13.35 60.35 0.81 0.49 16 25 N -0.37 -1.50 6.97 33.31 0.23 -1.27 16 26 H 0.45 -0.05 8.32 -190.34 -1.58 -1.64 16 27 C 0.04 0.64 5.46 -3.70 -0.02 0.62 16 28 C 0.15 2.96 6.69 -3.60 -0.02 2.94 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.03 0.71 6.94 -51.93 -0.36 0.35 16 31 H 0.07 1.76 4.61 -51.93 -0.24 1.52 16 32 H 0.06 1.01 7.99 -51.93 -0.41 0.59 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.77 7.97 -51.93 -0.41 0.35 16 35 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.06 0.58 6.40 -51.93 -0.33 0.25 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.40 0.33 7.74 -40.82 -0.32 0.02 16 45 H 0.21 0.99 8.06 -52.48 -0.42 0.56 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -35.57 389.82 -8.65 -44.22 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -9.08 Total: -7.32 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.68 Total: 1.61 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.28 Total: -57.47 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.09 Total: -5.15 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.57 -8.65 -44.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725015448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.059 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds