Wall clock time and date at job start Tue Mar 31 2020 19:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00162 * 2 1 4 4 H 1.48501 * 109.46752 * 271.97603 * 3 2 1 5 5 H 1.48495 * 109.47034 * 31.97310 * 3 2 1 6 6 H 1.48498 * 109.47116 * 151.97852 * 3 2 1 7 7 C 1.38811 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 339.44933 * 7 2 1 9 9 N 1.36941 * 120.00232 * 159.44001 * 7 2 1 10 10 C 1.47078 * 120.87830 * 333.51752 * 9 7 2 11 11 C 1.53247 * 108.51856 * 231.15996 * 10 9 7 12 12 N 1.46894 * 109.33607 * 306.16930 * 11 10 9 13 13 C 1.46900 * 110.99927 * 187.25585 * 12 11 10 14 14 C 1.52997 * 109.47641 * 170.00013 * 13 12 11 15 15 C 1.52993 * 109.47389 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47261 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.47261 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.47494 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00534 * 179.97438 * 18 17 16 20 20 O 1.21620 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.47236 * 120.00291 * 179.97438 * 19 18 17 22 22 C 1.36998 * 127.19099 * 179.97438 * 21 19 18 23 23 N 1.33325 * 106.37231 * 180.02562 * 22 21 19 24 24 N 1.28507 * 109.43679 * 0.02562 * 23 22 21 25 25 N 1.28713 * 110.64323 * 359.97438 * 24 23 22 26 26 H 0.96992 * 126.03509 * 179.97438 * 25 24 23 27 27 C 1.46900 * 111.27027 * 63.10977 * 12 11 10 28 28 C 1.47074 * 120.88165 * 153.49013 * 9 7 2 29 29 H 0.97002 * 119.99826 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.63173 * 111.45051 * 10 9 7 31 31 H 1.09002 * 109.79332 * 350.95918 * 10 9 7 32 32 H 1.09001 * 109.49143 * 186.21040 * 11 10 9 33 33 H 1.08999 * 109.49356 * 66.12942 * 11 10 9 34 34 H 1.09000 * 109.47278 * 49.99829 * 13 12 11 35 35 H 1.09004 * 109.46999 * 290.00053 * 13 12 11 36 36 H 1.09006 * 109.46779 * 60.00005 * 14 13 12 37 37 H 1.08995 * 109.47092 * 300.00202 * 14 13 12 38 38 H 1.08994 * 109.47339 * 60.00428 * 15 14 13 39 39 H 1.09001 * 109.47350 * 299.99545 * 15 14 13 40 40 H 1.09006 * 109.46897 * 60.00220 * 16 15 14 41 41 H 1.08995 * 109.47103 * 300.00338 * 16 15 14 42 42 H 1.09000 * 109.47234 * 59.99932 * 17 16 15 43 43 H 1.09004 * 109.47295 * 300.00001 * 17 16 15 44 44 H 0.97003 * 119.99449 * 359.97438 * 18 17 16 45 45 H 1.08006 * 126.81356 * 0.02562 * 22 21 19 46 46 H 1.08992 * 109.49341 * 56.84925 * 27 12 11 47 47 H 1.09003 * 109.49373 * 176.93683 * 27 12 11 48 48 H 1.09005 * 109.62479 * 248.55079 * 28 9 7 49 49 H 1.08999 * 109.63090 * 9.13200 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4559 2.0705 -1.3993 5 1 1.4692 2.6402 0.7413 6 1 3.5680 1.4284 0.6577 7 6 2.0102 -1.2022 0.0005 8 1 1.5217 -2.1075 0.3293 9 7 3.3142 -1.2402 -0.4159 10 6 3.8307 -0.2484 -1.3714 11 6 4.5271 -0.9921 -2.5161 12 7 5.5361 -1.9040 -1.9610 13 6 6.3438 -2.5084 -3.0288 14 6 7.5324 -3.2488 -2.4125 15 6 8.3732 -3.8788 -3.5246 16 6 9.5615 -4.6197 -2.9082 17 6 10.4020 -5.2502 -4.0203 18 7 11.5395 -5.9602 -3.4301 19 6 12.4220 -6.5974 -4.2246 20 8 12.2745 -6.5827 -5.4318 21 6 13.5655 -7.3104 -3.6314 22 6 14.5443 -8.0026 -4.2946 23 7 15.3661 -8.4802 -3.3597 24 7 14.9464 -8.1232 -2.1987 25 7 13.8725 -7.4212 -2.3005 26 1 13.3691 -7.0386 -1.5650 27 6 4.9159 -2.9374 -1.1210 28 6 4.2354 -2.2734 0.0808 29 1 -0.4850 0.8401 -0.0004 30 1 4.5453 0.4047 -0.8708 31 1 3.0073 0.3455 -1.7681 32 1 5.0112 -0.2723 -3.1761 33 1 3.7902 -1.5645 -3.0795 34 1 6.7086 -1.7267 -3.6952 35 1 5.7315 -3.2111 -3.5940 36 1 7.1676 -4.0305 -1.7461 37 1 8.1447 -2.5461 -1.8473 38 1 8.7380 -3.0974 -4.1912 39 1 7.7607 -4.5816 -4.0894 40 1 9.1963 -5.4012 -2.2418 41 1 10.1741 -3.9173 -2.3431 42 1 10.7671 -4.4691 -4.6871 43 1 9.7891 -5.9528 -4.5850 44 1 11.6573 -5.9716 -2.4673 45 1 14.6326 -8.1350 -5.3629 46 1 4.1736 -3.4826 -1.7038 47 1 5.6821 -3.6283 -0.7692 48 1 4.9890 -1.8148 0.7211 49 1 3.6776 -3.0210 0.6447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725015448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:20 Heat of formation + Delta-G solvation = 54.993575 kcal Electronic energy + Delta-G solvation = -27643.706855 eV Core-core repulsion = 23642.337756 eV Total energy + Delta-G solvation = -4001.369099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.47137 -40.73730 -39.96239 -37.56305 -36.50829 -35.13295 -34.44828 -33.54019 -32.61341 -32.02483 -30.93290 -28.49434 -26.42725 -25.28107 -24.87624 -24.14606 -23.72248 -22.54381 -22.26711 -21.69037 -20.97431 -20.26793 -18.81035 -17.81881 -17.55812 -17.37979 -17.22172 -16.93682 -16.23275 -16.12830 -15.86042 -15.75135 -15.55718 -15.41031 -15.28175 -15.12139 -14.51573 -14.35971 -14.02485 -13.73248 -13.51214 -13.36642 -13.07881 -12.95078 -12.72527 -12.44420 -12.38726 -12.24137 -12.08270 -11.98486 -11.92024 -11.89018 -11.70590 -11.58346 -11.48983 -11.36018 -11.21161 -10.74992 -10.71358 -10.26023 -9.34323 -8.89805 -8.18218 -5.49618 -0.25568 1.13697 1.29016 1.37834 1.41097 1.50909 1.84597 1.90251 2.40585 2.90411 3.06785 3.23534 3.36254 3.57266 3.81962 3.86544 4.00885 4.04078 4.09475 4.17062 4.22462 4.23904 4.41166 4.45698 4.54267 4.60561 4.64638 4.68464 4.68809 4.81867 4.84146 4.88678 4.89099 4.93954 5.01232 5.09332 5.11053 5.14304 5.29483 5.29722 5.47134 5.54168 5.62935 5.81513 6.08412 6.13913 6.22057 6.27568 6.85853 6.88715 7.11356 7.59983 8.02627 9.01662 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.034547 B = 0.001425 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.292965 B =19639.406657 C =19942.310873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.035 4.035 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.310 1.310 6 H -0.264 1.264 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.624 5.624 10 C 0.124 3.876 11 C 0.052 3.948 12 N -0.540 5.540 13 C 0.053 3.947 14 C -0.106 4.106 15 C -0.111 4.111 16 C -0.121 4.121 17 C 0.119 3.881 18 N -0.707 5.707 19 C 0.599 3.401 20 O -0.551 6.551 21 C -0.063 4.063 22 C 0.026 3.974 23 N -0.299 5.299 24 N -0.059 5.059 25 N -0.348 5.348 26 H 0.469 0.531 27 C 0.052 3.948 28 C 0.144 3.856 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.020 0.980 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.414 0.586 45 H 0.217 0.783 46 H 0.016 0.984 47 H 0.104 0.896 48 H 0.037 0.963 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.074 -12.680 -7.258 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.239 1.239 6 H -0.188 1.188 7 C -0.381 4.381 8 H 0.070 0.930 9 N -0.349 5.349 10 C -0.001 4.001 11 C -0.077 4.077 12 N -0.265 5.265 13 C -0.075 4.075 14 C -0.144 4.144 15 C -0.149 4.149 16 C -0.158 4.158 17 C -0.004 4.004 18 N -0.359 5.359 19 C 0.383 3.617 20 O -0.427 6.427 21 C -0.198 4.198 22 C -0.134 4.134 23 N -0.163 5.163 24 N -0.041 5.041 25 N -0.079 5.079 26 H 0.320 0.680 27 C -0.077 4.077 28 C 0.020 3.980 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.251 0.749 45 H 0.234 0.766 46 H 0.034 0.966 47 H 0.122 0.878 48 H 0.055 0.945 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 30.204 -12.964 -6.944 33.594 hybrid contribution -2.062 1.113 -0.204 2.352 sum 28.142 -11.850 -7.148 31.361 Atomic orbital electron populations 1.69966 1.07403 1.27248 1.55757 1.25887 0.95845 1.00987 1.00293 0.85877 0.78479 0.80060 0.77726 1.19894 1.23890 1.18844 1.18891 0.86693 0.93644 1.38845 0.93041 1.44554 1.07743 1.33620 1.49026 1.21449 0.95996 0.92008 0.90623 1.22427 0.93172 0.96148 0.95968 1.61944 1.23431 1.18977 1.22118 1.22235 0.94721 0.97877 0.92638 1.21508 0.95366 0.99327 0.98171 1.21393 0.95983 0.99779 0.97789 1.21712 0.96392 1.00512 0.97217 1.21516 0.86145 0.95949 0.96773 1.45784 1.26481 1.52910 1.10764 1.16756 0.80618 0.78338 0.86026 1.90893 1.74952 1.61997 1.14860 1.22220 1.02608 1.10188 0.84820 1.24293 0.90553 0.96120 1.02454 1.75031 1.25030 1.21088 0.95181 1.78201 0.98619 1.08048 1.19250 1.45570 1.19213 1.34990 1.08093 0.68000 1.22521 0.97130 0.93293 0.94783 1.21213 0.91544 0.90640 0.94644 0.92933 0.94698 0.93048 0.88960 0.96202 0.90292 0.95607 0.91693 0.91053 0.91190 0.91764 0.90063 0.89841 0.91309 0.91506 0.74935 0.76645 0.96605 0.87765 0.94463 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.35 13.97 21.65 0.30 -60.05 16 2 C -0.04 -2.08 5.24 84.86 0.44 -1.63 16 3 Si 0.95 46.70 24.31 68.60 1.67 48.37 16 4 H -0.27 -12.54 6.58 99.48 0.65 -11.89 16 5 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 6 H -0.26 -12.55 6.61 99.48 0.66 -11.89 16 7 C -0.25 -14.37 10.08 84.03 0.85 -13.52 16 8 H 0.05 3.21 8.05 -2.91 -0.02 3.18 16 9 N -0.62 -29.57 2.82 -698.12 -1.97 -31.54 16 10 C 0.12 5.29 4.35 86.35 0.38 5.66 16 11 C 0.05 1.76 5.62 86.39 0.49 2.24 16 12 N -0.54 -15.34 4.63 -895.26 -4.14 -19.48 16 13 C 0.05 1.06 4.96 86.30 0.43 1.49 16 14 C -0.11 -1.44 5.15 30.59 0.16 -1.28 16 15 C -0.11 -0.97 5.21 30.59 0.16 -0.81 16 16 C -0.12 -0.55 5.33 30.59 0.16 -0.38 16 17 C 0.12 0.83 5.67 86.38 0.49 1.32 16 18 N -0.71 -3.61 5.55 -466.57 -2.59 -6.20 16 19 C 0.60 6.82 7.81 86.61 0.68 7.50 16 20 O -0.55 -10.86 16.92 -4.09 -0.07 -10.93 16 21 C -0.06 -0.62 7.17 40.41 0.29 -0.33 16 22 C 0.03 0.34 11.87 84.17 1.00 1.33 16 23 N -0.30 -5.00 12.35 -57.50 -0.71 -5.71 16 24 N -0.06 -0.80 13.35 37.02 0.49 -0.31 16 25 N -0.35 -2.09 6.97 -48.52 -0.34 -2.43 16 26 H 0.47 -1.44 8.32 -219.91 -1.83 -3.27 16 27 C 0.05 1.54 5.46 86.38 0.47 2.01 16 28 C 0.14 5.46 6.69 86.35 0.58 6.04 16 29 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.04 1.47 6.94 -2.39 -0.02 1.45 16 31 H 0.05 2.40 4.61 -2.39 -0.01 2.39 16 32 H 0.09 2.58 7.99 -2.39 -0.02 2.56 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 1.45 7.97 -2.39 -0.02 1.44 16 35 H 0.03 0.55 8.12 -2.38 -0.02 0.53 16 36 H 0.06 0.89 6.40 -2.38 -0.02 0.87 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.41 -0.80 7.74 -92.71 -0.72 -1.52 16 45 H 0.22 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.10 2.35 6.16 -2.39 -0.01 2.34 16 48 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 49 H 0.06 2.26 7.95 -2.39 -0.02 2.24 16 Total: -1.00 -79.20 389.82 -2.47 -81.67 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -1.67 Total: -3.04 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.56 Total: 9.63 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -8.95 Total: -125.71 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.07 Total: -10.93 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.67 Total: 48.37 kcal Total: -79.20 -2.47 -81.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725015448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.661 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds