Wall clock time and date at job start Tue Mar 31 2020 19:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00510 * 2 1 4 4 C 1.53001 * 109.47499 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46900 * 65.00136 * 4 3 2 6 6 C 1.36941 * 119.99797 * 274.98379 * 5 4 3 7 7 H 1.08005 * 119.99505 * 138.37696 * 6 5 4 8 8 C 1.38804 * 120.00198 * 318.37437 * 6 5 4 9 9 N 1.31612 * 120.00203 * 352.81273 * 8 6 5 10 10 Si 1.86806 * 120.00029 * 172.80952 * 8 6 5 11 11 H 1.48507 * 109.46978 * 89.99949 * 10 8 6 12 12 H 1.48501 * 109.47341 * 209.99815 * 10 8 6 13 13 H 1.48504 * 109.46938 * 330.00283 * 10 8 6 14 14 C 1.46500 * 120.00061 * 94.98779 * 5 4 3 15 15 C 1.53002 * 109.47252 * 269.99756 * 14 5 4 16 16 N 1.46499 * 109.47197 * 180.02562 * 15 14 5 17 17 C 1.34770 * 120.00087 * 180.27952 * 16 15 14 18 18 O 1.21630 * 119.99910 * 354.56812 * 17 16 15 19 19 C 1.47167 * 120.00121 * 174.56864 * 17 16 15 20 20 C 1.38398 * 126.88064 * 5.36678 * 19 17 16 21 21 C 1.39678 * 105.35620 * 179.97438 * 20 19 17 22 22 N 1.30860 * 107.86211 * 359.97438 * 21 20 19 23 23 N 1.28447 * 110.92941 * 359.71526 * 22 21 20 24 24 C 1.46495 * 125.19686 * 180.28172 * 23 22 21 25 25 C 1.53788 * 113.61368 * 43.09602 * 24 23 22 26 26 C 1.53954 * 87.02169 * 220.05115 * 25 24 23 27 27 C 1.53785 * 87.11079 * 25.36334 * 26 25 24 28 28 H 1.09000 * 109.47002 * 59.99309 * 1 2 3 29 29 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46425 * 299.99804 * 1 2 3 31 31 H 1.08995 * 109.46899 * 60.00249 * 3 2 1 32 32 H 1.08996 * 109.46993 * 300.00470 * 3 2 1 33 33 H 1.09001 * 109.46603 * 304.99951 * 4 3 2 34 34 H 1.08994 * 109.46916 * 185.00002 * 4 3 2 35 35 H 0.97005 * 120.00637 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46694 * 149.99807 * 14 5 4 37 37 H 1.09000 * 109.47195 * 29.99853 * 14 5 4 38 38 H 1.09001 * 109.46907 * 59.99746 * 15 14 5 39 39 H 1.09008 * 109.46867 * 299.99894 * 15 14 5 40 40 H 0.97006 * 119.99587 * 359.97438 * 16 15 14 41 41 H 1.08001 * 127.32519 * 359.97311 * 20 19 17 42 42 H 1.08003 * 126.06827 * 180.02562 * 21 20 19 43 43 H 1.08995 * 112.85455 * 174.29115 * 24 23 22 44 44 H 1.09005 * 113.61398 * 334.57290 * 25 24 23 45 45 H 1.09004 * 113.61251 * 105.46645 * 25 24 23 46 46 H 1.08994 * 113.53426 * 270.81328 * 26 25 24 47 47 H 1.08995 * 113.74081 * 139.94688 * 26 25 24 48 48 H 1.08998 * 113.60944 * 220.09595 * 27 26 25 49 49 H 1.08994 * 113.61643 * 89.18345 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9990 -0.7998 -1.3699 7 1 3.6590 -1.2694 -2.2811 8 6 4.4596 -1.5790 -0.3175 9 7 5.0046 -1.0074 0.7352 10 14 4.3058 -3.4391 -0.3955 11 1 5.5234 -4.0105 -1.0251 12 1 4.1581 -3.9816 0.9789 13 1 3.1136 -3.8038 -1.2024 14 6 4.3909 1.4036 -2.3795 15 6 3.1777 1.7143 -3.2583 16 7 3.5930 2.5530 -4.3854 17 6 2.6844 2.9586 -5.2943 18 8 1.5407 2.5489 -5.2355 19 6 3.0760 3.8972 -6.3581 20 6 4.3499 4.3700 -6.6210 21 6 4.2084 5.2246 -7.7167 22 7 2.9443 5.2378 -8.0549 23 7 2.2562 4.4705 -7.2883 24 6 0.8120 4.2480 -7.3924 25 6 0.3206 4.0582 -8.8372 26 6 -0.9003 4.9120 -8.4490 27 6 -0.0147 5.5443 -7.3623 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0889 35 1 5.3269 -1.5519 1.4705 36 1 5.1408 0.8756 -2.9687 37 1 4.8145 2.3345 -2.0025 38 1 2.4279 2.2422 -2.6690 39 1 2.7541 0.7833 -3.6354 40 1 4.5213 2.8200 -4.4750 41 1 5.2599 4.1294 -6.0916 42 1 5.0016 5.7760 -8.1997 43 1 0.4508 3.4836 -6.7045 44 1 0.9629 4.5281 -9.5822 45 1 0.0724 3.0254 -9.0819 46 1 -1.7304 4.3286 -8.0508 47 1 -1.2092 5.6138 -9.2236 48 1 -0.5334 5.7094 -6.4179 49 1 0.5357 6.4212 -7.7031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725757830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:33 Heat of formation + Delta-G solvation = 44.874665 kcal Electronic energy + Delta-G solvation = -29504.064311 eV Core-core repulsion = 25469.963672 eV Total energy + Delta-G solvation = -4034.100639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.68901 -39.24162 -38.69750 -37.21846 -35.78353 -34.30556 -31.93101 -31.61181 -30.90721 -29.28861 -27.39632 -26.04145 -25.71056 -25.59825 -24.21234 -23.01316 -22.07291 -21.41606 -20.53753 -20.10042 -19.34220 -18.13966 -16.80452 -16.31963 -16.04697 -15.83445 -15.71315 -15.44572 -14.98712 -14.86620 -14.62077 -14.31448 -14.11000 -13.93494 -13.62927 -13.51017 -13.19260 -12.93965 -12.85652 -12.65901 -12.51988 -11.96803 -11.76215 -11.52502 -11.15489 -11.10210 -10.92921 -10.85371 -10.80869 -10.76436 -10.67363 -10.56955 -10.09790 -9.90195 -9.87630 -9.71528 -9.31261 -9.11727 -8.85238 -8.64132 -8.45866 -6.53421 -5.65817 -3.39549 1.20668 2.27720 2.50744 3.24240 3.31201 3.42648 3.48934 3.53632 4.05351 4.20515 4.45470 4.50653 4.53328 4.62914 4.71443 4.77026 5.00266 5.27914 5.35351 5.40660 5.44083 5.47995 5.53101 5.55646 5.58076 5.59249 5.67429 5.74655 5.80523 5.84212 5.90596 6.04025 6.10778 6.17722 6.30127 6.30841 6.39522 6.53757 6.65126 6.66306 6.66392 6.72813 6.89409 7.56189 7.75676 7.93504 7.98257 8.15349 8.22687 8.65347 9.24488 9.84203 10.38104 11.31000 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.002629 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.554500 B =10649.689962 C =11375.544219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.047 3.953 4 C 0.130 3.870 5 N -0.571 5.571 6 C -0.240 4.240 7 H 0.056 0.944 8 C 0.022 3.978 9 N -0.898 5.898 10 Si 0.904 3.096 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.138 3.862 15 C 0.096 3.904 16 N -0.704 5.704 17 C 0.585 3.415 18 O -0.546 6.546 19 C -0.033 4.033 20 C -0.193 4.193 21 C -0.006 4.006 22 N -0.280 5.280 23 N -0.245 5.245 24 C 0.108 3.892 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.142 4.142 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.254 0.746 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.155 0.845 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 13.526 -13.782 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C -0.032 4.032 4 C 0.004 3.996 5 N -0.290 5.290 6 C -0.370 4.370 7 H 0.074 0.926 8 C -0.177 4.177 9 N -0.541 5.541 10 Si 0.734 3.266 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.010 3.990 15 C -0.029 4.029 16 N -0.354 5.354 17 C 0.369 3.631 18 O -0.425 6.425 19 C -0.162 4.162 20 C -0.222 4.222 21 C -0.182 4.182 22 N -0.112 5.112 23 N -0.032 5.032 24 C 0.008 3.992 25 C -0.178 4.178 26 C -0.174 4.174 27 C -0.180 4.180 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.138 0.862 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.178 0.822 42 H 0.202 0.798 43 H 0.172 0.828 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.105 13.383 -14.285 20.824 hybrid contribution 0.595 -0.838 0.541 1.161 sum -6.510 12.545 -13.744 19.714 Atomic orbital electron populations 1.22630 0.84479 1.01401 0.98316 1.88243 1.16298 1.27484 1.94764 1.23454 0.98963 0.84191 0.96613 1.21387 0.87523 0.96644 0.94054 1.43518 1.74193 1.02297 1.09022 1.18855 1.35748 0.80981 1.01429 0.92624 1.25210 0.96894 0.98025 0.97550 1.69636 1.42306 1.34028 1.08170 0.86279 0.77754 0.85655 0.76880 1.21550 1.21668 1.20352 1.21035 0.92575 0.94906 0.90499 1.22624 1.00942 0.93643 0.85729 1.45827 1.11359 1.52087 1.26163 1.16963 0.85400 0.80068 0.80631 1.90721 1.19566 1.57666 1.74559 1.21600 0.91739 1.04619 0.98199 1.22277 0.96341 1.02347 1.01209 1.23538 0.93244 1.02757 0.98670 1.73053 1.06008 1.13733 1.18426 1.45793 1.08384 1.29487 1.19584 1.23911 0.72907 1.01310 1.01085 1.23364 0.97575 1.01579 0.95299 1.22714 0.96524 0.99361 0.98800 1.23353 0.97438 0.96844 1.00360 0.95355 0.90786 0.95664 0.95977 0.95662 0.86201 0.94399 0.93596 0.92523 0.94160 0.92149 0.91236 0.76486 0.82185 0.79813 0.82780 0.88485 0.90344 0.89368 0.90230 0.90330 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.94 9.94 -35.23 -0.35 -8.29 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.13 2.96 5.84 -4.04 -0.02 2.93 16 5 N -0.57 -13.46 2.43 -173.24 -0.42 -13.88 16 6 C -0.24 -6.39 8.74 -15.06 -0.13 -6.52 16 7 H 0.06 1.51 7.84 -52.48 -0.41 1.10 16 8 C 0.02 0.61 5.28 -17.44 -0.09 0.51 16 9 N -0.90 -25.21 10.89 55.49 0.60 -24.61 16 10 Si 0.90 21.94 29.56 -169.99 -5.02 16.91 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 C 0.14 2.62 5.82 -4.04 -0.02 2.59 16 15 C 0.10 1.69 6.00 -4.04 -0.02 1.67 16 16 N -0.70 -10.11 5.54 -61.46 -0.34 -10.45 16 17 C 0.58 9.09 7.79 -12.64 -0.10 8.99 16 18 O -0.55 -10.04 14.48 5.25 0.08 -9.97 16 19 C -0.03 -0.45 6.96 -82.06 -0.57 -1.02 16 20 C -0.19 -2.10 10.50 -38.99 -0.41 -2.51 16 21 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 22 N -0.28 -3.49 11.14 30.59 0.34 -3.15 16 23 N -0.25 -3.22 3.46 -49.91 -0.17 -3.39 16 24 C 0.11 1.27 4.44 -67.12 -0.30 0.97 16 25 C -0.14 -1.32 7.76 -25.82 -0.20 -1.52 16 26 C -0.14 -1.05 8.09 -25.83 -0.21 -1.26 16 27 C -0.14 -1.35 7.80 -25.91 -0.20 -1.55 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.51 6.51 -51.93 -0.34 0.17 16 33 H 0.12 3.17 5.21 -51.93 -0.27 2.90 16 34 H 0.04 0.78 7.84 -51.93 -0.41 0.37 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.06 1.07 8.04 -51.92 -0.42 0.66 16 37 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 38 H 0.06 1.14 6.51 -51.93 -0.34 0.80 16 39 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 40 H 0.40 4.56 7.51 -40.82 -0.31 4.25 16 41 H 0.16 1.28 7.59 -52.49 -0.40 0.88 16 42 H 0.18 1.30 8.06 -52.48 -0.42 0.87 16 43 H 0.15 2.06 5.63 -51.93 -0.29 1.77 16 44 H 0.10 0.96 7.76 -51.93 -0.40 0.55 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -32.00 399.06 -8.19 -40.19 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.77 Total: 4.77 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.15 Total: 5.85 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.01 Total: -55.48 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.27 Total: -18.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.00 -8.19 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725757830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.068 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds