Wall clock time and date at job start Tue Mar 31 2020 19:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00510 * 2 1 4 4 C 1.53001 * 109.47499 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46900 * 65.00136 * 4 3 2 6 6 C 1.36941 * 119.99797 * 274.98379 * 5 4 3 7 7 H 1.08005 * 119.99505 * 138.37696 * 6 5 4 8 8 C 1.38804 * 120.00198 * 318.37437 * 6 5 4 9 9 N 1.31612 * 120.00203 * 352.81273 * 8 6 5 10 10 Si 1.86806 * 120.00029 * 172.80952 * 8 6 5 11 11 H 1.48507 * 109.46978 * 89.99949 * 10 8 6 12 12 H 1.48501 * 109.47341 * 209.99815 * 10 8 6 13 13 H 1.48504 * 109.46938 * 330.00283 * 10 8 6 14 14 C 1.46500 * 120.00061 * 94.98779 * 5 4 3 15 15 C 1.53002 * 109.47252 * 269.99756 * 14 5 4 16 16 N 1.46499 * 109.47197 * 180.02562 * 15 14 5 17 17 C 1.34770 * 120.00087 * 180.27952 * 16 15 14 18 18 O 1.21630 * 119.99910 * 354.56812 * 17 16 15 19 19 C 1.47167 * 120.00121 * 174.56864 * 17 16 15 20 20 C 1.38398 * 126.88064 * 5.36678 * 19 17 16 21 21 C 1.39678 * 105.35620 * 179.97438 * 20 19 17 22 22 N 1.30860 * 107.86211 * 359.97438 * 21 20 19 23 23 N 1.28447 * 110.92941 * 359.71526 * 22 21 20 24 24 C 1.46495 * 125.19686 * 180.28172 * 23 22 21 25 25 C 1.53788 * 113.61368 * 43.09602 * 24 23 22 26 26 C 1.53954 * 87.02169 * 220.05115 * 25 24 23 27 27 C 1.53785 * 87.11079 * 25.36334 * 26 25 24 28 28 H 1.09000 * 109.47002 * 59.99309 * 1 2 3 29 29 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46425 * 299.99804 * 1 2 3 31 31 H 1.08995 * 109.46899 * 60.00249 * 3 2 1 32 32 H 1.08996 * 109.46993 * 300.00470 * 3 2 1 33 33 H 1.09001 * 109.46603 * 304.99951 * 4 3 2 34 34 H 1.08994 * 109.46916 * 185.00002 * 4 3 2 35 35 H 0.97005 * 120.00637 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46694 * 149.99807 * 14 5 4 37 37 H 1.09000 * 109.47195 * 29.99853 * 14 5 4 38 38 H 1.09001 * 109.46907 * 59.99746 * 15 14 5 39 39 H 1.09008 * 109.46867 * 299.99894 * 15 14 5 40 40 H 0.97006 * 119.99587 * 359.97438 * 16 15 14 41 41 H 1.08001 * 127.32519 * 359.97311 * 20 19 17 42 42 H 1.08003 * 126.06827 * 180.02562 * 21 20 19 43 43 H 1.08995 * 112.85455 * 174.29115 * 24 23 22 44 44 H 1.09005 * 113.61398 * 334.57290 * 25 24 23 45 45 H 1.09004 * 113.61251 * 105.46645 * 25 24 23 46 46 H 1.08994 * 113.53426 * 270.81328 * 26 25 24 47 47 H 1.08995 * 113.74081 * 139.94688 * 26 25 24 48 48 H 1.08998 * 113.60944 * 220.09595 * 27 26 25 49 49 H 1.08994 * 113.61643 * 89.18345 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9990 -0.7998 -1.3699 7 1 3.6590 -1.2694 -2.2811 8 6 4.4596 -1.5790 -0.3175 9 7 5.0046 -1.0074 0.7352 10 14 4.3058 -3.4391 -0.3955 11 1 5.5234 -4.0105 -1.0251 12 1 4.1581 -3.9816 0.9789 13 1 3.1136 -3.8038 -1.2024 14 6 4.3909 1.4036 -2.3795 15 6 3.1777 1.7143 -3.2583 16 7 3.5930 2.5530 -4.3854 17 6 2.6844 2.9586 -5.2943 18 8 1.5407 2.5489 -5.2355 19 6 3.0760 3.8972 -6.3581 20 6 4.3499 4.3700 -6.6210 21 6 4.2084 5.2246 -7.7167 22 7 2.9443 5.2378 -8.0549 23 7 2.2562 4.4705 -7.2883 24 6 0.8120 4.2480 -7.3924 25 6 0.3206 4.0582 -8.8372 26 6 -0.9003 4.9120 -8.4490 27 6 -0.0147 5.5443 -7.3623 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0889 35 1 5.3269 -1.5519 1.4705 36 1 5.1408 0.8756 -2.9687 37 1 4.8145 2.3345 -2.0025 38 1 2.4279 2.2422 -2.6690 39 1 2.7541 0.7833 -3.6354 40 1 4.5213 2.8200 -4.4750 41 1 5.2599 4.1294 -6.0916 42 1 5.0016 5.7760 -8.1997 43 1 0.4508 3.4836 -6.7045 44 1 0.9629 4.5281 -9.5822 45 1 0.0724 3.0254 -9.0819 46 1 -1.7304 4.3286 -8.0508 47 1 -1.2092 5.6138 -9.2236 48 1 -0.5334 5.7094 -6.4179 49 1 0.5357 6.4212 -7.7031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725757830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:32 Heat of formation + Delta-G solvation = 24.216800 kcal Electronic energy + Delta-G solvation = -29504.960103 eV Core-core repulsion = 25469.963672 eV Total energy + Delta-G solvation = -4034.996431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.59397 -40.51009 -39.46242 -38.87825 -37.40228 -35.80470 -33.42436 -32.73509 -32.16230 -30.81585 -29.02458 -27.15152 -26.78884 -26.54642 -25.86444 -24.31176 -23.24237 -22.54435 -22.15094 -21.27561 -20.25035 -19.19859 -18.62398 -17.57904 -17.24188 -17.07558 -16.84914 -16.55265 -16.49093 -16.42820 -16.11454 -15.63647 -15.43610 -15.14553 -15.00337 -14.90465 -14.43240 -14.26607 -13.81196 -13.62392 -13.61176 -13.33947 -13.29577 -12.98046 -12.73841 -12.47539 -12.35873 -12.29028 -12.23315 -11.96953 -11.90637 -11.67570 -11.66058 -11.62788 -11.52877 -11.06457 -10.48174 -10.43283 -10.29283 -10.01814 -9.94291 -8.46631 -7.66366 -5.43846 0.19203 1.34381 1.48101 1.50904 1.58919 1.65395 2.12190 2.15243 2.58936 3.22964 3.28460 3.43093 3.44509 3.51095 3.71109 3.73388 3.82250 3.95184 4.13080 4.22111 4.29835 4.42596 4.48830 4.51652 4.57465 4.60514 4.64956 4.70781 4.73102 4.75025 4.81748 4.83551 4.85048 4.93037 4.94431 4.95914 5.00441 5.11775 5.17262 5.30814 5.41306 5.60800 5.72129 5.77355 5.98490 6.40156 6.52267 6.72524 7.02831 7.11487 7.28993 7.92531 8.41438 9.24770 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.002629 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.554500 B =10649.689962 C =11375.544219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.053 3.947 4 C 0.128 3.872 5 N -0.587 5.587 6 C -0.239 4.239 7 H 0.042 0.958 8 C -0.022 4.022 9 N -0.919 5.919 10 Si 0.952 3.048 11 H -0.282 1.282 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.143 3.857 15 C 0.120 3.880 16 N -0.692 5.692 17 C 0.585 3.415 18 O -0.582 6.582 19 C -0.065 4.065 20 C -0.176 4.176 21 C -0.006 4.006 22 N -0.291 5.291 23 N -0.254 5.254 24 C 0.091 3.909 25 C -0.135 4.135 26 C -0.122 4.122 27 C -0.137 4.137 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.249 0.751 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.418 0.582 41 H 0.191 0.809 42 H 0.221 0.779 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.078 0.922 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 15.130 -15.051 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.307 5.307 6 C -0.370 4.370 7 H 0.060 0.940 8 C -0.218 4.218 9 N -0.564 5.564 10 Si 0.781 3.219 11 H -0.209 1.209 12 H -0.221 1.221 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.006 4.006 16 N -0.343 5.343 17 C 0.371 3.629 18 O -0.463 6.463 19 C -0.193 4.193 20 C -0.205 4.205 21 C -0.181 4.181 22 N -0.124 5.124 23 N -0.042 5.042 24 C -0.010 4.010 25 C -0.173 4.173 26 C -0.159 4.159 27 C -0.175 4.175 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.255 0.745 41 H 0.208 0.792 42 H 0.237 0.763 43 H 0.150 0.850 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.800 15.012 -15.578 22.678 hybrid contribution 0.498 -1.266 0.875 1.618 sum -6.303 13.746 -14.703 21.091 Atomic orbital electron populations 1.22792 0.82080 1.02502 0.99673 1.88165 1.19095 1.28715 1.95089 1.23324 0.97526 0.83876 0.97797 1.21298 0.89144 0.96755 0.92644 1.43663 1.74781 1.01891 1.10356 1.18891 1.34646 0.82735 1.00717 0.93989 1.25725 0.97533 1.00928 0.97645 1.69789 1.43478 1.34629 1.08483 0.85533 0.77594 0.82370 0.76362 1.20905 1.22074 1.20676 1.21068 0.92826 0.95223 0.89334 1.22056 0.99853 0.92567 0.86157 1.45541 1.12214 1.51438 1.25151 1.17258 0.84848 0.79908 0.80891 1.90707 1.21118 1.58978 1.75523 1.21494 0.93190 1.05830 0.98753 1.22717 0.96176 1.00825 1.00761 1.24208 0.93278 1.02343 0.98308 1.73057 1.06998 1.13778 1.18547 1.45947 1.08778 1.29754 1.19682 1.24008 0.72948 1.02012 1.01999 1.23341 0.98193 1.02014 0.93795 1.22703 0.95837 0.99019 0.98366 1.23325 0.97345 0.95792 1.01057 0.94722 0.89947 0.93414 0.93803 0.95170 0.89575 0.92353 0.94151 0.92530 0.91586 0.93195 0.94443 0.74472 0.79190 0.76295 0.85045 0.88765 0.90272 0.88505 0.88401 0.90378 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -17.73 9.94 -148.98 -1.48 -19.21 16 3 C 0.05 2.17 6.28 71.98 0.45 2.62 16 4 C 0.13 5.76 5.84 86.38 0.50 6.27 16 5 N -0.59 -27.63 2.43 -702.00 -1.70 -29.33 16 6 C -0.24 -12.86 8.74 84.03 0.73 -12.12 16 7 H 0.04 2.34 7.84 -2.91 -0.02 2.32 16 8 C -0.02 -1.20 5.28 84.86 0.45 -0.76 16 9 N -0.92 -52.27 10.89 21.65 0.24 -52.03 16 10 Si 0.95 45.60 29.56 68.60 2.03 47.62 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 13 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 14 C 0.14 5.27 5.82 86.38 0.50 5.78 16 15 C 0.12 4.22 6.00 86.38 0.52 4.74 16 16 N -0.69 -19.24 5.54 -466.62 -2.59 -21.83 16 17 C 0.58 18.11 7.79 86.59 0.67 18.78 16 18 O -0.58 -22.04 14.48 -4.13 -0.06 -22.10 16 19 C -0.06 -1.69 6.96 40.79 0.28 -1.41 16 20 C -0.18 -3.35 10.50 22.66 0.24 -3.12 16 21 C -0.01 -0.11 12.03 85.19 1.02 0.91 16 22 N -0.29 -6.77 11.14 -57.14 -0.64 -7.41 16 23 N -0.25 -6.51 3.46 -311.81 -1.08 -7.59 16 24 C 0.09 2.13 4.44 45.52 0.20 2.33 16 25 C -0.14 -2.47 7.76 31.18 0.24 -2.23 16 26 C -0.12 -1.71 8.09 31.18 0.25 -1.46 16 27 C -0.14 -2.52 7.80 31.12 0.24 -2.28 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.19 6.51 -2.39 -0.02 1.17 16 33 H 0.09 4.61 5.21 -2.39 -0.01 4.59 16 34 H 0.06 2.33 7.84 -2.39 -0.02 2.31 16 35 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 36 H 0.06 2.09 8.04 -2.38 -0.02 2.07 16 37 H 0.07 2.12 7.86 -2.39 -0.02 2.10 16 38 H 0.05 1.87 6.51 -2.39 -0.02 1.86 16 39 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.42 8.62 7.51 -92.70 -0.70 7.92 16 41 H 0.19 2.28 7.59 -2.91 -0.02 2.26 16 42 H 0.22 2.19 8.06 -2.91 -0.02 2.16 16 43 H 0.13 3.70 5.63 -2.39 -0.01 3.69 16 44 H 0.09 1.78 7.76 -2.38 -0.02 1.76 16 45 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.09 1.72 8.03 -2.39 -0.02 1.70 16 Total: -1.00 -70.68 399.06 2.54 -68.13 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.26 Total: 23.54 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 7.57 Total: 20.20 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.77 Total: -118.19 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.54 Total: -41.31 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.68 2.54 -68.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725757830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.350 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds