Wall clock time and date at job start Tue Mar 31 2020 19:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00200 * 2 1 4 4 C 1.52995 * 109.47228 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47010 * 180.02562 * 4 3 2 6 6 C 1.35034 * 124.88232 * 125.00214 * 5 4 3 7 7 C 1.35366 * 107.22960 * 180.02562 * 6 5 4 8 8 C 1.41500 * 105.50080 * 0.02562 * 7 6 5 9 9 C 1.47710 * 126.51366 * 179.97438 * 8 7 6 10 10 O 1.21574 * 120.00424 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99589 * 180.02562 * 9 8 7 12 12 C 1.46509 * 120.00096 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47232 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47210 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.64129 * 305.70729 * 14 13 12 16 16 C 1.55159 * 110.72515 * 182.56224 * 14 13 12 17 17 C 1.54903 * 101.58282 * 206.13551 * 16 14 13 18 18 N 1.47429 * 104.83496 * 37.01077 * 17 16 14 19 19 C 1.36931 * 125.65448 * 155.90861 * 18 17 16 20 20 H 1.07999 * 120.00329 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99592 * 359.96747 * 19 18 17 22 22 N 1.31621 * 120.00144 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99892 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47154 * 59.99925 * 23 21 19 25 25 H 1.48500 * 109.47258 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46935 * 299.99798 * 23 21 19 27 27 C 1.47323 * 108.73140 * 335.71042 * 18 17 16 28 28 N 1.28470 * 124.88718 * 305.04248 * 5 4 3 29 29 H 1.09002 * 109.47432 * 59.99305 * 1 2 3 30 30 H 1.09005 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46831 * 299.99062 * 1 2 3 32 32 H 1.09004 * 109.46782 * 60.00508 * 3 2 1 33 33 H 1.09000 * 109.47246 * 300.01066 * 3 2 1 34 34 H 1.09003 * 109.46921 * 60.01022 * 4 3 2 35 35 H 1.09000 * 109.47765 * 300.00611 * 4 3 2 36 36 H 1.08005 * 126.38373 * 359.77767 * 6 5 4 37 37 H 1.08003 * 127.24760 * 179.97438 * 7 6 5 38 38 H 0.97005 * 120.00364 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.46837 * 299.99927 * 12 11 9 40 40 H 1.09005 * 109.46628 * 59.99557 * 12 11 9 41 41 H 1.09000 * 109.47604 * 300.00013 * 13 12 11 42 42 H 1.09005 * 109.47221 * 60.00477 * 13 12 11 43 43 H 1.09002 * 111.00047 * 324.20836 * 16 14 13 44 44 H 1.09000 * 110.99966 * 88.02230 * 16 14 13 45 45 H 1.09005 * 110.36757 * 155.84224 * 17 16 14 46 46 H 1.08999 * 110.36606 * 278.06310 * 17 16 14 47 47 H 0.97006 * 119.99963 * 179.97438 * 22 21 19 48 48 H 1.08996 * 110.06769 * 241.87333 * 27 18 17 49 49 H 1.09006 * 109.84378 * 120.61288 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0262 2.9695 0.9073 7 6 5.3352 4.2440 0.5721 8 6 4.5715 4.5264 -0.5852 9 6 4.5556 5.7963 -1.3395 10 8 5.2474 6.7278 -0.9764 11 7 3.7734 5.9227 -2.4297 12 6 3.7572 7.1824 -3.1777 13 6 2.7946 7.0608 -4.3606 14 6 2.7772 8.3765 -5.1413 15 1 2.5479 9.2124 -4.4804 16 6 1.7608 8.3071 -6.3115 17 6 2.3579 9.3361 -7.3036 18 7 3.8182 9.1717 -7.1845 19 6 4.7390 9.4979 -8.1440 20 1 5.7911 9.3388 -7.9592 21 6 4.3201 10.0332 -9.3543 22 7 3.0380 10.2276 -9.5795 23 14 5.5762 10.4777 -10.6636 24 1 6.3368 9.2631 -11.0526 25 1 4.8778 11.0271 -11.8534 26 1 6.5126 11.4970 -10.1255 27 6 4.1238 8.6025 -5.8605 28 7 3.8771 3.4409 -0.8621 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6887 1.8463 0.8901 33 1 1.6885 1.8464 -0.8899 34 1 3.8566 0.6440 -0.8910 35 1 3.8575 0.6434 0.8890 36 1 5.4189 2.4145 1.7466 37 1 6.0198 4.9062 1.0812 38 1 3.2212 5.1796 -2.7193 39 1 3.4287 7.9894 -2.5229 40 1 4.7599 7.3989 -3.5463 41 1 3.1235 6.2538 -5.0153 42 1 1.7918 6.8441 -3.9923 43 1 1.7375 7.3095 -6.7502 44 1 0.7665 8.6109 -5.9839 45 1 2.0331 9.1154 -8.3204 46 1 2.0644 10.3477 -7.0233 47 1 2.7453 10.6020 -10.4252 48 1 4.7380 9.2971 -5.2875 49 1 4.6455 7.6526 -5.9775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732054816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:06 Heat of formation + Delta-G solvation = 21.497284 kcal Electronic energy + Delta-G solvation = -27989.661947 eV Core-core repulsion = 23954.547588 eV Total energy + Delta-G solvation = -4035.114358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.01930 -39.44884 -38.57633 -37.72174 -35.16032 -34.42536 -32.98835 -31.27781 -30.70763 -29.91190 -28.89209 -27.11996 -26.49753 -25.04778 -24.23590 -22.76809 -21.92300 -21.75943 -20.25399 -20.00888 -19.22565 -18.24977 -17.35220 -16.84500 -16.82583 -16.55976 -16.12887 -15.74983 -15.61700 -15.21110 -14.78888 -14.55456 -14.30822 -14.10498 -13.74831 -13.65390 -13.44811 -13.26421 -12.62428 -12.47099 -12.26257 -12.20275 -11.96959 -11.84806 -11.64097 -11.52723 -11.23694 -11.01058 -10.85744 -10.69890 -10.37325 -10.30143 -10.11907 -9.94691 -9.84420 -9.69126 -9.63494 -9.42917 -9.40687 -9.00898 -8.58313 -6.75508 -5.58682 -2.99709 1.29742 1.79860 1.86556 3.06941 3.24875 3.33280 3.45028 3.48738 3.50331 3.90837 4.20311 4.36081 4.42511 4.54416 4.55024 4.73912 4.76343 4.86977 4.98376 5.01942 5.10306 5.12520 5.17316 5.32686 5.37828 5.45949 5.54159 5.65950 5.70259 5.84602 5.95118 6.05837 6.08860 6.25173 6.29362 6.30149 6.41205 6.44941 6.47981 6.66835 6.70785 6.84275 7.05317 7.35190 7.59339 7.63694 7.69509 7.92402 8.16804 8.43466 9.29364 9.90319 10.56194 11.45190 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.001845 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.125599 B =15171.643873 C =16100.830425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.010 4.010 9 C 0.600 3.400 10 O -0.532 6.532 11 N -0.715 5.715 12 C 0.117 3.883 13 C -0.116 4.116 14 C -0.097 4.097 15 H 0.072 0.928 16 C -0.138 4.138 17 C 0.151 3.849 18 N -0.606 5.606 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.924 5.924 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.139 3.861 28 N -0.263 5.263 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.184 0.816 37 H 0.165 0.835 38 H 0.405 0.595 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.021 0.979 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -21.721 24.014 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.157 4.157 7 C -0.205 4.205 8 C -0.170 4.170 9 C 0.384 3.616 10 O -0.406 6.406 11 N -0.366 5.366 12 C -0.006 4.006 13 C -0.154 4.154 14 C -0.117 4.117 15 H 0.091 0.909 16 C -0.177 4.177 17 C 0.027 3.973 18 N -0.332 5.332 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.573 5.573 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.013 3.987 28 N -0.098 5.098 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.201 0.799 37 H 0.182 0.818 38 H 0.240 0.760 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.123 0.877 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.767 -21.662 23.283 32.157 hybrid contribution 0.758 0.389 -0.121 0.861 sum -4.009 -21.272 23.162 31.703 Atomic orbital electron populations 1.22811 0.79624 1.03290 1.00577 1.87773 1.20832 1.26596 1.95638 1.22643 0.92083 0.85703 1.02396 1.21692 0.93123 0.78481 1.06318 1.45306 1.31275 1.11481 1.19180 1.22900 0.97866 0.96637 0.98338 1.21824 1.04425 0.95938 0.98301 1.22045 1.01516 0.93982 0.99500 1.16882 0.79868 0.84877 0.79961 1.90816 1.42276 1.39311 1.68246 1.45933 1.45211 1.17326 1.28148 1.21564 1.01262 0.84917 0.92833 1.21790 0.98603 0.99208 0.95829 1.22093 0.97709 0.95534 0.96338 0.90945 1.23036 0.96801 1.01187 0.96685 1.21911 0.82837 0.93168 0.99424 1.44589 1.02907 1.73924 1.11745 1.19057 0.88351 1.34362 0.93046 0.90598 1.24787 0.96349 1.01676 0.98110 1.69800 1.12441 1.50758 1.24313 0.86151 0.80066 0.78179 0.81110 1.21214 1.21617 1.21254 1.21434 0.93777 0.96100 0.87420 1.73474 1.22884 0.97713 1.15768 0.93445 0.89027 0.93738 0.92451 0.91163 0.87769 0.86887 0.79902 0.81791 0.76041 0.91255 0.90706 0.91128 0.91640 0.92224 0.92529 0.87724 0.97188 0.93790 0.96146 0.95863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.47 10.70 -35.23 -0.38 -2.85 16 3 C 0.05 0.28 6.04 37.15 0.22 0.50 16 4 C 0.12 0.60 6.77 -4.04 -0.03 0.57 16 5 N -0.28 -2.18 3.41 -61.33 -0.21 -2.39 16 6 C -0.02 -0.11 11.40 -17.17 -0.20 -0.30 16 7 C -0.18 -1.74 10.81 -39.36 -0.43 -2.16 16 8 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 9 C 0.60 8.55 7.82 -12.39 -0.10 8.46 16 10 O -0.53 -9.29 16.93 5.30 0.09 -9.21 16 11 N -0.72 -9.03 5.55 -61.29 -0.34 -9.37 16 12 C 0.12 1.60 5.54 -4.04 -0.02 1.58 16 13 C -0.12 -1.57 4.72 -26.73 -0.13 -1.70 16 14 C -0.10 -1.68 2.95 -88.78 -0.26 -1.94 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.14 -2.62 6.54 -24.58 -0.16 -2.78 16 17 C 0.15 3.76 5.89 -2.53 -0.01 3.75 16 18 N -0.61 -16.04 3.40 -169.83 -0.58 -16.62 16 19 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 22 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 23 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.14 2.98 6.13 -2.90 -0.02 2.96 16 28 N -0.26 -2.74 11.36 33.42 0.38 -2.36 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.15 8.14 -51.92 -0.42 -0.27 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.26 8.04 -51.93 -0.42 -0.16 16 36 H 0.18 0.52 8.06 -52.48 -0.42 0.09 16 37 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16 38 H 0.40 4.36 8.20 -40.82 -0.33 4.02 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.15 7.58 -51.93 -0.39 0.76 16 41 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.02 0.50 7.73 -51.93 -0.40 0.10 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -35.36 404.20 -8.41 -43.77 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.15 Total: -0.20 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.85 Total: 2.50 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.19 Total: -57.70 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.29 Total: -12.05 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.36 -8.41 -43.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732054816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.264 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds