Wall clock time and date at job start Tue Mar 31 2020 19:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99674 * 2 1 4 4 C 1.53002 * 109.46595 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46679 * 179.97438 * 4 3 2 6 6 C 1.35042 * 124.88449 * 125.00255 * 5 4 3 7 7 C 1.35358 * 107.23145 * 180.02562 * 6 5 4 8 8 C 1.41503 * 105.50254 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51680 * 179.97438 * 8 7 6 10 10 O 1.21567 * 120.00276 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00120 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00440 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47442 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47138 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.88826 * 57.42335 * 14 13 12 16 16 C 1.55159 * 111.03830 * 181.32899 * 14 13 12 17 17 C 1.54318 * 102.94169 * 153.58739 * 16 14 13 18 18 N 1.47292 * 107.31103 * 337.81949 * 17 16 14 19 19 C 1.36935 * 125.79485 * 178.92456 * 18 17 16 20 20 H 1.08000 * 119.99782 * 174.82802 * 19 18 17 21 21 C 1.38813 * 119.99748 * 354.82496 * 19 18 17 22 22 N 1.31620 * 120.00341 * 7.02995 * 21 19 18 23 23 Si 1.86808 * 119.99539 * 187.02565 * 21 19 18 24 24 H 1.48502 * 109.46896 * 94.99260 * 23 21 19 25 25 H 1.48501 * 109.46951 * 214.98619 * 23 21 19 26 26 H 1.48492 * 109.47136 * 334.98799 * 23 21 19 27 27 C 1.47424 * 108.55382 * 358.92245 * 18 17 16 28 28 N 1.28470 * 124.88728 * 305.33009 * 5 4 3 29 29 H 1.09000 * 109.47467 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.47187 * 60.00106 * 1 2 3 31 31 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47187 * 60.00244 * 3 2 1 33 33 H 1.09004 * 109.47060 * 299.99775 * 3 2 1 34 34 H 1.08997 * 109.47120 * 60.00244 * 4 3 2 35 35 H 1.08997 * 109.47135 * 300.00090 * 4 3 2 36 36 H 1.08001 * 126.37786 * 0.05299 * 6 5 4 37 37 H 1.08001 * 127.25185 * 180.02562 * 7 6 5 38 38 H 0.97000 * 119.99803 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47208 * 59.99749 * 12 11 9 40 40 H 1.09000 * 109.47180 * 300.00159 * 12 11 9 41 41 H 1.08992 * 109.46983 * 59.99798 * 13 12 11 42 42 H 1.09003 * 109.46760 * 299.99588 * 13 12 11 43 43 H 1.08999 * 110.71715 * 271.95309 * 16 14 13 44 44 H 1.08997 * 110.71630 * 35.04670 * 16 14 13 45 45 H 1.09004 * 109.88141 * 97.22592 * 17 16 14 46 46 H 1.09001 * 109.88609 * 218.23118 * 17 16 14 47 47 H 0.96997 * 119.99818 * 179.97438 * 22 21 19 48 48 H 1.08992 * 110.36982 * 265.26424 * 27 18 17 49 49 H 1.09001 * 110.36388 * 143.04866 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0255 2.9707 0.9075 7 6 5.3346 4.2448 0.5709 8 6 4.5727 4.5254 -0.5880 9 6 4.5577 5.7941 -1.3442 10 8 5.2486 6.7262 -0.9814 11 7 3.7780 5.9184 -2.4365 12 6 3.7634 7.1765 -3.1869 13 6 2.8025 7.0531 -4.3711 14 6 2.7879 8.3669 -5.1551 15 1 3.7901 8.6278 -5.4950 16 6 1.7979 8.2929 -6.3475 17 6 1.4036 9.7695 -6.5614 18 7 1.6636 10.4800 -5.2977 19 6 1.4660 11.8167 -5.0751 20 1 1.6088 12.2262 -4.0860 21 6 1.0824 12.6451 -6.1208 22 7 0.7743 12.1279 -7.2912 23 14 1.0032 14.4941 -5.8666 24 1 2.2778 15.1104 -6.3146 25 1 -0.1222 15.0546 -6.6569 26 1 0.7909 14.7871 -4.4264 27 6 2.1727 9.5106 -4.3106 28 7 3.8736 3.4416 -0.8604 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8891 35 1 3.8566 0.6439 0.8908 36 1 5.4206 2.4155 1.7453 37 1 6.0194 4.9075 1.0792 38 1 3.2264 5.1748 -2.7258 39 1 4.7669 7.3924 -3.5537 40 1 3.4335 7.9849 -2.5344 41 1 1.7992 6.8375 -4.0039 42 1 3.1322 6.2446 -5.0237 43 1 2.2908 7.8930 -7.2337 44 1 0.9263 7.6919 -6.0883 45 1 2.0062 10.2021 -7.3601 46 1 0.3462 9.8376 -6.8168 47 1 0.5059 12.7068 -8.0217 48 1 1.3567 9.1313 -3.6956 49 1 2.9360 9.9724 -3.6842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732054817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:10 Heat of formation + Delta-G solvation = 20.037940 kcal Electronic energy + Delta-G solvation = -27989.215393 eV Core-core repulsion = 23954.037753 eV Total energy + Delta-G solvation = -4035.177640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.02288 -39.44839 -38.57031 -37.72031 -35.16356 -34.42829 -32.96367 -31.28728 -30.72042 -29.91315 -28.91545 -27.11844 -26.49665 -25.04304 -24.23563 -22.78069 -21.93990 -21.76259 -20.25013 -19.93250 -19.34211 -18.25897 -17.35938 -16.83864 -16.80735 -16.55088 -16.14205 -15.72251 -15.54784 -15.22373 -14.74604 -14.50825 -14.36082 -14.07610 -13.75962 -13.67852 -13.54564 -13.26157 -12.63241 -12.40238 -12.27486 -12.19525 -11.95950 -11.88843 -11.78560 -11.49732 -11.23699 -11.01169 -10.82924 -10.72647 -10.36721 -10.27705 -10.08005 -9.90826 -9.81019 -9.69329 -9.63815 -9.57667 -9.43238 -9.00609 -8.51514 -6.74922 -5.66110 -2.97485 1.29249 1.79148 1.86790 3.07059 3.24330 3.33412 3.44890 3.50154 3.51941 3.90484 4.20461 4.36008 4.42237 4.54298 4.56186 4.75013 4.77245 4.87174 4.98527 4.99557 5.10281 5.13275 5.17538 5.31898 5.37201 5.45822 5.54347 5.68224 5.72642 5.81798 5.93681 6.05675 6.08865 6.19518 6.27987 6.29917 6.41251 6.44374 6.47446 6.61832 6.66846 6.80595 7.04627 7.34863 7.62454 7.63464 7.70541 7.89059 8.16932 8.32844 9.28703 9.89735 10.57258 11.46416 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.001846 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.280187 B =15167.346309 C =16176.471616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.009 4.009 9 C 0.600 3.400 10 O -0.531 6.531 11 N -0.715 5.715 12 C 0.117 3.883 13 C -0.116 4.116 14 C -0.100 4.100 15 H 0.076 0.924 16 C -0.138 4.138 17 C 0.176 3.824 18 N -0.607 5.607 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.139 3.861 28 N -0.263 5.263 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.184 0.816 37 H 0.165 0.835 38 H 0.405 0.595 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.039 0.961 47 H 0.251 0.749 48 H 0.017 0.983 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 -28.589 15.707 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.073 5.073 6 C -0.157 4.157 7 C -0.205 4.205 8 C -0.170 4.170 9 C 0.384 3.616 10 O -0.405 6.405 11 N -0.367 5.367 12 C -0.006 4.006 13 C -0.154 4.154 14 C -0.120 4.120 15 H 0.095 0.905 16 C -0.176 4.176 17 C 0.051 3.949 18 N -0.333 5.333 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.206 1.206 27 C 0.013 3.987 28 N -0.099 5.099 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.201 0.799 37 H 0.182 0.818 38 H 0.239 0.761 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.034 0.966 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.249 -28.421 15.081 32.454 hybrid contribution -0.020 1.073 0.534 1.199 sum 4.229 -27.348 15.615 31.775 Atomic orbital electron populations 1.22811 0.79591 1.03278 1.00635 1.87769 1.20859 1.26596 1.95650 1.22651 0.92054 0.85706 1.02461 1.21688 0.93152 0.78471 1.06266 1.45309 1.31238 1.11417 1.19299 1.22900 0.97946 0.96613 0.98284 1.21826 1.04516 0.95958 0.98173 1.22051 1.01370 0.94052 0.99552 1.16881 0.79925 0.84857 0.79955 1.90819 1.42348 1.39155 1.68218 1.45931 1.45333 1.17356 1.28038 1.21552 1.00597 0.85206 0.93216 1.21738 0.99183 0.98718 0.95753 1.22266 0.99694 0.93591 0.96443 0.90535 1.22887 0.97760 1.00227 0.96745 1.21175 0.99358 0.85438 0.88927 1.44551 1.75947 1.04320 1.08525 1.19081 1.39592 0.81877 0.94855 0.90444 1.24822 1.01846 0.98081 0.95848 1.69983 1.51485 1.33103 1.02353 0.86126 0.77197 0.85423 0.77236 1.21651 1.21852 1.20641 1.21616 0.95247 0.89685 0.92169 1.73471 1.22656 0.97774 1.15970 0.93695 0.93434 0.89034 0.92410 0.91144 0.87823 0.86890 0.79906 0.81784 0.76085 0.91169 0.90667 0.91313 0.91631 0.92366 0.92607 0.93560 0.94319 0.93860 0.96573 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.47 10.70 -35.23 -0.38 -2.85 16 3 C 0.05 0.28 6.04 37.16 0.22 0.50 16 4 C 0.12 0.58 6.77 -4.04 -0.03 0.55 16 5 N -0.28 -2.14 3.41 -61.33 -0.21 -2.35 16 6 C -0.02 -0.10 11.40 -17.17 -0.20 -0.30 16 7 C -0.18 -1.72 10.81 -39.37 -0.43 -2.15 16 8 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 9 C 0.60 8.48 7.82 -12.39 -0.10 8.39 16 10 O -0.53 -9.27 16.93 5.31 0.09 -9.18 16 11 N -0.72 -8.89 5.55 -61.30 -0.34 -9.23 16 12 C 0.12 1.59 5.52 -4.04 -0.02 1.57 16 13 C -0.12 -1.52 4.85 -26.73 -0.13 -1.65 16 14 C -0.10 -1.72 3.07 -88.47 -0.27 -1.99 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.14 -2.56 6.42 -24.90 -0.16 -2.72 16 17 C 0.18 4.36 5.39 -2.92 -0.02 4.35 16 18 N -0.61 -16.02 3.40 -169.86 -0.58 -16.59 16 19 C -0.23 -6.51 10.27 -15.06 -0.15 -6.66 16 20 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 21 C -0.01 -0.29 5.48 -17.43 -0.10 -0.38 16 22 N -0.92 -27.75 10.38 55.49 0.58 -27.18 16 23 Si 0.91 22.70 29.56 -169.99 -5.02 17.67 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.14 2.94 5.89 -2.53 -0.01 2.92 16 28 N -0.26 -2.70 11.35 33.42 0.38 -2.32 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.24 8.04 -51.93 -0.42 -0.17 16 36 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.40 4.23 8.20 -40.82 -0.33 3.89 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.14 7.45 -51.93 -0.39 0.75 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.96 8.04 -51.93 -0.42 0.55 16 45 H 0.05 1.27 7.31 -51.93 -0.38 0.89 16 46 H 0.04 1.06 7.62 -51.93 -0.40 0.66 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 49 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -35.72 404.92 -8.45 -44.17 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.20 Total: -1.22 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.86 Total: 2.98 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.17 Total: -57.67 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.29 Total: -12.03 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.72 -8.45 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732054817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.204 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds