Wall clock time and date at job start Tue Mar 31 2020 19:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99674 * 2 1 4 4 C 1.53002 * 109.46595 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46679 * 179.97438 * 4 3 2 6 6 C 1.35042 * 124.88449 * 125.00255 * 5 4 3 7 7 C 1.35358 * 107.23145 * 180.02562 * 6 5 4 8 8 C 1.41503 * 105.50254 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51680 * 179.97438 * 8 7 6 10 10 O 1.21567 * 120.00276 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00120 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00440 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47442 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47138 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.88826 * 57.42335 * 14 13 12 16 16 C 1.55159 * 111.03830 * 181.32899 * 14 13 12 17 17 C 1.54318 * 102.94169 * 153.58739 * 16 14 13 18 18 N 1.47292 * 107.31103 * 337.81949 * 17 16 14 19 19 C 1.36935 * 125.79485 * 178.92456 * 18 17 16 20 20 H 1.08000 * 119.99782 * 174.82802 * 19 18 17 21 21 C 1.38813 * 119.99748 * 354.82496 * 19 18 17 22 22 N 1.31620 * 120.00341 * 7.02995 * 21 19 18 23 23 Si 1.86808 * 119.99539 * 187.02565 * 21 19 18 24 24 H 1.48502 * 109.46896 * 94.99260 * 23 21 19 25 25 H 1.48501 * 109.46951 * 214.98619 * 23 21 19 26 26 H 1.48492 * 109.47136 * 334.98799 * 23 21 19 27 27 C 1.47424 * 108.55382 * 358.92245 * 18 17 16 28 28 N 1.28470 * 124.88728 * 305.33009 * 5 4 3 29 29 H 1.09000 * 109.47467 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.47187 * 60.00106 * 1 2 3 31 31 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47187 * 60.00244 * 3 2 1 33 33 H 1.09004 * 109.47060 * 299.99775 * 3 2 1 34 34 H 1.08997 * 109.47120 * 60.00244 * 4 3 2 35 35 H 1.08997 * 109.47135 * 300.00090 * 4 3 2 36 36 H 1.08001 * 126.37786 * 0.05299 * 6 5 4 37 37 H 1.08001 * 127.25185 * 180.02562 * 7 6 5 38 38 H 0.97000 * 119.99803 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47208 * 59.99749 * 12 11 9 40 40 H 1.09000 * 109.47180 * 300.00159 * 12 11 9 41 41 H 1.08992 * 109.46983 * 59.99798 * 13 12 11 42 42 H 1.09003 * 109.46760 * 299.99588 * 13 12 11 43 43 H 1.08999 * 110.71715 * 271.95309 * 16 14 13 44 44 H 1.08997 * 110.71630 * 35.04670 * 16 14 13 45 45 H 1.09004 * 109.88141 * 97.22592 * 17 16 14 46 46 H 1.09001 * 109.88609 * 218.23118 * 17 16 14 47 47 H 0.96997 * 119.99818 * 179.97438 * 22 21 19 48 48 H 1.08992 * 110.36982 * 265.26424 * 27 18 17 49 49 H 1.09001 * 110.36388 * 143.04866 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0255 2.9707 0.9075 7 6 5.3346 4.2448 0.5709 8 6 4.5727 4.5254 -0.5880 9 6 4.5577 5.7941 -1.3442 10 8 5.2486 6.7262 -0.9814 11 7 3.7780 5.9184 -2.4365 12 6 3.7634 7.1765 -3.1869 13 6 2.8025 7.0531 -4.3711 14 6 2.7879 8.3669 -5.1551 15 1 3.7901 8.6278 -5.4950 16 6 1.7979 8.2929 -6.3475 17 6 1.4036 9.7695 -6.5614 18 7 1.6636 10.4800 -5.2977 19 6 1.4660 11.8167 -5.0751 20 1 1.6088 12.2262 -4.0860 21 6 1.0824 12.6451 -6.1208 22 7 0.7743 12.1279 -7.2912 23 14 1.0032 14.4941 -5.8666 24 1 2.2778 15.1104 -6.3146 25 1 -0.1222 15.0546 -6.6569 26 1 0.7909 14.7871 -4.4264 27 6 2.1727 9.5106 -4.3106 28 7 3.8736 3.4416 -0.8604 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8891 35 1 3.8566 0.6439 0.8908 36 1 5.4206 2.4155 1.7453 37 1 6.0194 4.9075 1.0792 38 1 3.2264 5.1748 -2.7258 39 1 4.7669 7.3924 -3.5537 40 1 3.4335 7.9849 -2.5344 41 1 1.7992 6.8375 -4.0039 42 1 3.1322 6.2446 -5.0237 43 1 2.2908 7.8930 -7.2337 44 1 0.9263 7.6919 -6.0883 45 1 2.0062 10.2021 -7.3601 46 1 0.3462 9.8376 -6.8168 47 1 0.5059 12.7068 -8.0217 48 1 1.3567 9.1313 -3.6956 49 1 2.9360 9.9724 -3.6842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732054817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:09 Heat of formation + Delta-G solvation = -5.468240 kcal Electronic energy + Delta-G solvation = -27990.321424 eV Core-core repulsion = 23954.037753 eV Total energy + Delta-G solvation = -4036.283671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.67715 -40.54475 -39.36254 -38.97884 -36.47953 -35.01843 -34.70709 -32.61571 -31.69949 -30.87259 -30.34709 -28.27443 -27.33745 -26.61596 -25.25889 -23.77457 -22.95357 -22.42094 -21.81811 -21.32116 -20.59331 -18.94088 -18.84777 -17.98120 -17.42878 -17.04344 -17.01524 -16.84942 -16.69692 -16.43410 -16.16283 -15.60515 -15.56006 -15.10234 -14.96019 -14.70383 -14.25869 -14.08940 -13.97749 -13.85997 -13.65744 -13.31868 -13.09400 -13.00081 -12.80013 -12.67163 -12.62301 -12.33163 -12.24078 -12.00262 -11.92645 -11.81750 -11.64913 -11.39070 -11.32813 -11.18073 -10.77261 -10.69177 -10.37616 -10.14779 -9.98340 -8.88347 -7.86878 -5.20533 0.48396 1.16556 1.32912 1.43765 1.46335 1.55135 2.14211 2.35419 2.48986 2.78906 3.30925 3.37703 3.65948 3.75074 3.80813 3.83786 3.98449 3.98853 4.12168 4.16557 4.22811 4.35237 4.37708 4.45779 4.49026 4.61963 4.63220 4.67228 4.68897 4.74267 4.75708 4.79087 4.85351 4.90947 5.00123 5.11977 5.16546 5.25283 5.31241 5.40899 5.44759 5.53236 5.69861 5.79206 5.80695 6.01674 6.20624 6.42866 6.87094 7.10433 7.15664 7.78428 8.44004 9.24336 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.001846 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.280187 B =15167.346309 C =16176.471616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.276 5.276 6 C 0.010 3.990 7 C -0.203 4.203 8 C -0.040 4.040 9 C 0.596 3.404 10 O -0.575 6.575 11 N -0.704 5.704 12 C 0.122 3.878 13 C -0.098 4.098 14 C -0.084 4.084 15 H 0.074 0.926 16 C -0.122 4.122 17 C 0.180 3.820 18 N -0.631 5.631 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.068 4.068 22 N -0.950 5.950 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.133 3.867 28 N -0.272 5.272 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.230 0.770 37 H 0.163 0.837 38 H 0.416 0.584 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.010 0.990 46 H 0.002 0.998 47 H 0.247 0.753 48 H 0.023 0.977 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -31.495 17.228 36.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.003 3.997 5 N -0.066 5.066 6 C -0.133 4.133 7 C -0.231 4.231 8 C -0.199 4.199 9 C 0.382 3.618 10 O -0.453 6.453 11 N -0.355 5.355 12 C -0.001 4.001 13 C -0.136 4.136 14 C -0.104 4.104 15 H 0.093 0.907 16 C -0.160 4.160 17 C 0.055 3.945 18 N -0.358 5.358 19 C -0.373 4.373 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.193 1.193 27 C 0.008 3.992 28 N -0.109 5.109 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.165 0.835 36 H 0.246 0.754 37 H 0.181 0.819 38 H 0.253 0.747 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.028 0.972 46 H 0.020 0.980 47 H 0.056 0.944 48 H 0.041 0.959 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.599 -31.377 16.612 35.799 hybrid contribution -0.179 1.876 0.126 1.889 sum 4.420 -29.500 16.738 34.205 Atomic orbital electron populations 1.22960 0.78802 1.04267 1.00882 1.87745 1.21813 1.26818 1.95679 1.22597 0.92798 0.85461 1.01787 1.21980 0.92339 0.77077 1.08330 1.45646 1.30727 1.11705 1.18529 1.23505 0.96058 0.95511 0.98203 1.22030 1.05266 0.97629 0.98181 1.21829 1.03460 0.93827 1.00758 1.17258 0.79215 0.85320 0.79998 1.90782 1.44205 1.40882 1.69437 1.45789 1.45041 1.17207 1.27505 1.21377 1.00349 0.85273 0.93122 1.21579 0.99746 0.96988 0.95337 1.22141 0.98755 0.94110 0.95420 0.90740 1.22753 0.99036 0.95808 0.98409 1.20995 0.96535 0.89312 0.87687 1.44905 1.76198 1.04541 1.10132 1.19460 1.39163 0.83605 0.95060 0.90347 1.25689 1.02068 1.02610 0.95752 1.70202 1.52421 1.34291 1.02982 0.85067 0.76888 0.79828 0.77626 1.21382 1.21906 1.19326 1.21824 0.95321 0.90133 0.91936 1.73410 1.22682 0.97862 1.16954 0.93151 0.93515 0.87759 0.92450 0.92541 0.87139 0.83524 0.75356 0.81891 0.74727 0.91777 0.92660 0.90263 0.88634 0.89894 0.90597 0.97193 0.97952 0.94388 0.95927 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.24 10.70 -148.98 -1.59 -5.83 16 3 C 0.05 0.47 6.04 71.98 0.43 0.91 16 4 C 0.12 0.73 6.77 86.38 0.58 1.32 16 5 N -0.28 -3.41 3.41 -347.95 -1.19 -4.59 16 6 C 0.01 0.10 11.40 83.53 0.95 1.05 16 7 C -0.20 -3.72 10.81 22.41 0.24 -3.48 16 8 C -0.04 -0.92 7.13 42.46 0.30 -0.62 16 9 C 0.60 16.99 7.82 86.75 0.68 17.67 16 10 O -0.58 -20.76 16.93 -3.93 -0.07 -20.82 16 11 N -0.70 -16.93 5.55 -466.11 -2.59 -19.52 16 12 C 0.12 3.22 5.52 86.38 0.48 3.69 16 13 C -0.10 -2.33 4.85 30.59 0.15 -2.18 16 14 C -0.08 -2.78 3.07 -9.40 -0.03 -2.81 16 15 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 16 C -0.12 -4.35 6.42 31.78 0.20 -4.14 16 17 C 0.18 9.16 5.39 86.68 0.47 9.63 16 18 N -0.63 -34.08 3.40 -691.31 -2.35 -36.43 16 19 C -0.24 -14.39 10.27 84.03 0.86 -13.53 16 20 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 21 C -0.07 -4.06 5.48 84.86 0.46 -3.59 16 22 N -0.95 -59.20 10.38 21.65 0.22 -58.98 16 23 Si 0.98 47.61 29.56 68.60 2.03 49.64 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.13 5.62 5.89 86.86 0.51 6.13 16 28 N -0.27 -5.16 11.35 -48.18 -0.55 -5.70 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.15 -0.06 8.04 -2.39 -0.02 -0.08 16 36 H 0.23 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.42 8.02 8.20 -92.71 -0.76 7.26 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.69 7.45 -2.39 -0.02 1.67 16 41 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 42 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 45 H 0.01 0.56 7.31 -2.38 -0.02 0.55 16 46 H 0.00 0.13 7.62 -2.39 -0.02 0.11 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 48 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 49 H 0.03 1.45 8.06 -2.39 -0.02 1.44 16 Total: -1.00 -81.79 404.92 1.64 -80.15 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.18 Total: 10.62 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 7.55 Total: 11.48 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -6.45 Total: -125.22 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.66 Total: -26.66 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -81.79 1.64 -80.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732054817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.680 kcal (2) G-P(sol) polarization free energy of solvation -81.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds