Wall clock time and date at job start Tue Mar 31 2020 19:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00279 * 2 1 4 4 C 1.53002 * 109.46758 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46481 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75250 * 125.00134 * 5 4 3 7 7 C 1.38038 * 107.41877 * 179.97438 * 6 5 4 8 8 C 1.47423 * 126.41882 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00150 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47001 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46963 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.89060 * 302.57219 * 13 12 11 15 15 C 1.55156 * 111.00589 * 178.64797 * 13 12 11 16 16 C 1.54328 * 102.94491 * 206.42372 * 15 13 12 17 17 N 1.47027 * 107.26884 * 22.19099 * 16 15 13 18 18 C 1.36928 * 125.64799 * 181.02489 * 17 16 15 19 19 H 1.07998 * 120.00352 * 180.02562 * 18 17 16 20 20 C 1.38815 * 120.00033 * 0.04212 * 18 17 16 21 21 N 1.31618 * 120.00161 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47033 * 89.99665 * 22 20 18 24 24 H 1.48497 * 109.47333 * 210.00104 * 22 20 18 25 25 H 1.48503 * 109.46787 * 330.00000 * 22 20 18 26 26 C 1.47424 * 108.70246 * 1.06265 * 17 16 15 27 27 C 1.41300 * 107.17045 * 359.97438 * 7 6 5 28 28 N 1.30449 * 108.01964 * 359.97438 * 27 7 6 29 29 H 1.08997 * 109.46809 * 300.00507 * 1 2 3 30 30 H 1.08998 * 109.46459 * 60.00038 * 1 2 3 31 31 H 1.08998 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46923 * 59.99654 * 3 2 1 33 33 H 1.08997 * 109.46711 * 299.99782 * 3 2 1 34 34 H 1.08997 * 109.47618 * 60.00163 * 4 3 2 35 35 H 1.08997 * 109.47400 * 299.99444 * 4 3 2 36 36 H 1.07999 * 126.28833 * 359.73609 * 6 5 4 37 37 H 0.97003 * 120.00216 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46639 * 299.99880 * 11 10 8 39 39 H 1.09002 * 109.47125 * 59.99426 * 11 10 8 40 40 H 1.09004 * 109.47368 * 299.99486 * 12 11 10 41 41 H 1.08998 * 109.47705 * 60.00258 * 12 11 10 42 42 H 1.08996 * 110.72151 * 324.78679 * 15 13 12 43 43 H 1.09001 * 110.71807 * 88.06089 * 15 13 12 44 44 H 1.08994 * 109.88017 * 262.77782 * 16 15 13 45 45 H 1.08995 * 110.00906 * 141.68333 * 16 15 13 46 46 H 0.96998 * 120.00111 * 180.02562 * 21 20 18 47 47 H 1.08998 * 110.36506 * 217.03278 * 26 17 16 48 48 H 1.09003 * 110.46056 * 94.75543 * 26 17 16 49 49 H 1.07991 * 125.98958 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0211 2.9859 0.8926 7 6 5.3271 4.2838 0.5359 8 6 6.2622 5.1857 1.2328 9 8 6.8501 4.8026 2.2260 10 7 6.4646 6.4351 0.7698 11 6 7.3942 7.3312 1.4621 12 6 7.4400 8.6776 0.7369 13 6 8.4104 9.6137 1.4603 14 1 8.1198 9.7448 2.5026 15 6 8.5100 10.9810 0.7337 16 6 9.9181 11.4779 1.1235 17 7 10.7065 10.2978 1.5076 18 6 12.0060 10.3121 1.9389 19 1 12.4993 9.3869 2.1980 20 6 12.6894 11.5158 2.0434 21 7 12.0882 12.6435 1.7285 22 14 14.4625 11.5353 2.6311 23 1 15.3721 11.4056 1.4645 24 1 14.7373 12.8147 3.3332 25 1 14.6876 10.4011 3.5629 26 6 9.8665 9.0965 1.3507 27 6 4.5764 4.5861 -0.6223 28 7 3.8709 3.5335 -0.9321 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8575 0.6434 -0.8891 35 1 3.8568 0.6438 0.8909 36 1 5.4207 2.4438 1.7370 37 1 5.9954 6.7409 -0.0222 38 1 7.0577 7.4818 2.4879 39 1 8.3900 6.8879 1.4677 40 1 7.7768 8.5267 -0.2887 41 1 6.4444 9.1212 0.7310 42 1 8.4322 10.8507 -0.3457 43 1 7.7448 11.6672 1.0966 44 1 9.8482 12.1669 1.9651 45 1 10.3861 11.9761 0.2745 46 1 12.5658 13.4846 1.8011 47 1 10.0757 8.3808 2.1457 48 1 10.0342 8.6390 0.3756 49 1 4.5857 5.5239 -1.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732059728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:15 Heat of formation + Delta-G solvation = 15.142585 kcal Electronic energy + Delta-G solvation = -27578.410280 eV Core-core repulsion = 23543.020361 eV Total energy + Delta-G solvation = -4035.389919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.78353 -39.31113 -38.56150 -37.71970 -35.14325 -34.43787 -32.94437 -31.06333 -30.73909 -29.70716 -28.85182 -27.03145 -26.42175 -24.78908 -24.03166 -23.13855 -22.04942 -21.10405 -20.34872 -19.92580 -19.38935 -18.27596 -17.12973 -16.90620 -16.81226 -16.09993 -15.89302 -15.69517 -15.57638 -15.21909 -14.78769 -14.58399 -14.46764 -14.04394 -13.80851 -13.55273 -13.50469 -13.20273 -12.67127 -12.40239 -12.31790 -12.19292 -11.99236 -11.88574 -11.78106 -11.52777 -11.36634 -11.02976 -10.82678 -10.71615 -10.38958 -10.08975 -10.07147 -10.04996 -9.91125 -9.77610 -9.69664 -9.55958 -9.21011 -8.89449 -8.53632 -6.75367 -5.64839 -2.97598 1.16808 1.70489 1.83926 3.11888 3.21794 3.35725 3.44564 3.49528 3.51536 3.97340 4.22975 4.36857 4.37958 4.55960 4.57133 4.70397 4.73000 4.81309 4.89199 4.99314 5.00690 5.07346 5.14611 5.17100 5.30349 5.40779 5.54213 5.68065 5.72572 5.82156 5.94290 5.99803 6.08147 6.19956 6.27944 6.28983 6.41933 6.44472 6.48537 6.61408 6.66258 6.80221 7.04201 7.09349 7.51681 7.63508 7.70159 7.89562 8.24635 8.33452 9.29446 9.90073 10.56661 11.47024 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.001508 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.698785 B =18558.851996 C =19087.353493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.362 5.362 6 C 0.132 3.868 7 C -0.289 4.289 8 C 0.591 3.409 9 O -0.549 6.549 10 N -0.725 5.725 11 C 0.120 3.880 12 C -0.116 4.116 13 C -0.100 4.100 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.140 3.860 27 C 0.085 3.915 28 N -0.297 5.297 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.190 0.810 37 H 0.397 0.603 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.041 0.959 46 H 0.251 0.749 47 H 0.037 0.963 48 H 0.017 0.983 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.961 -21.755 -5.638 33.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.019 4.019 7 C -0.304 4.304 8 C 0.378 3.622 9 O -0.428 6.428 10 N -0.375 5.375 11 C -0.003 4.003 12 C -0.154 4.154 13 C -0.120 4.120 14 H 0.094 0.906 15 C -0.176 4.176 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.013 3.987 27 C -0.103 4.103 28 N -0.117 5.117 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.207 0.793 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.035 0.965 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -25.166 -22.678 -5.688 34.351 hybrid contribution 1.094 0.869 0.428 1.461 sum -24.072 -21.809 -5.260 32.905 Atomic orbital electron populations 1.22794 0.79785 1.03225 1.00452 1.87782 1.20709 1.26792 1.95618 1.22645 0.92392 0.85481 1.02162 1.21511 0.92799 0.78568 1.05867 1.48321 1.33060 1.12096 1.20790 1.23024 0.90494 0.94281 0.94053 1.20326 1.10384 0.96443 1.03237 1.17197 0.80585 0.81082 0.83288 1.90797 1.50027 1.75689 1.26237 1.45828 1.46514 1.13394 1.31795 1.21490 0.93362 0.89246 0.96243 1.21742 1.00056 0.93784 0.99842 1.22270 0.95419 0.95120 0.99239 0.90601 1.22896 1.00138 0.95667 0.98944 1.21135 0.85566 0.89154 0.98976 1.44488 1.10067 1.00911 1.77856 1.19086 0.86402 0.93267 1.36684 0.90482 1.24791 0.98445 0.95395 1.01951 1.69971 1.35657 0.97035 1.54487 0.86131 0.84607 0.76873 0.78257 1.21679 1.21714 1.20695 1.21610 0.88669 0.90753 0.97630 1.24118 0.93492 0.97824 0.94908 1.77161 1.24388 0.96856 1.13273 0.93735 0.93636 0.89075 0.92526 0.91423 0.88216 0.87175 0.79282 0.76885 0.91397 0.90850 0.91295 0.91672 0.92582 0.92379 0.93747 0.94120 0.93870 0.94433 0.96509 0.79165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.47 10.70 -35.23 -0.38 -2.85 16 3 C 0.05 0.29 6.12 37.16 0.23 0.51 16 4 C 0.13 0.70 6.86 -4.04 -0.03 0.67 16 5 N -0.36 -2.82 3.65 -60.81 -0.22 -3.04 16 6 C 0.13 1.12 11.25 -16.56 -0.19 0.93 16 7 C -0.29 -2.87 6.13 -105.07 -0.64 -3.51 16 8 C 0.59 7.40 7.81 -12.52 -0.10 7.30 16 9 O -0.55 -9.03 16.90 5.27 0.09 -8.94 16 10 N -0.72 -7.73 5.55 -61.38 -0.34 -8.07 16 11 C 0.12 1.52 5.52 -4.04 -0.02 1.50 16 12 C -0.12 -1.42 4.84 -26.73 -0.13 -1.55 16 13 C -0.10 -1.68 3.07 -88.47 -0.27 -1.95 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.14 -2.52 6.42 -24.89 -0.16 -2.68 16 16 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 17 N -0.61 -15.86 3.39 -170.07 -0.58 -16.43 16 18 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.65 10.31 55.49 0.57 -27.07 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.14 2.90 5.89 -2.53 -0.01 2.89 16 27 C 0.08 0.70 11.50 -16.98 -0.20 0.50 16 28 N -0.30 -2.73 12.33 30.86 0.38 -2.35 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.35 8.06 -51.93 -0.42 -0.07 16 36 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.40 2.99 7.43 -40.82 -0.30 2.69 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.07 7.46 -51.93 -0.39 0.69 16 40 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 45 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 48 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 49 H 0.19 0.95 7.50 -52.49 -0.39 0.56 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -36.20 404.43 -8.22 -44.43 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -8.14 Total: -2.49 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.68 Total: 3.17 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.19 Total: -56.97 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.29 Total: -11.79 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.20 -8.22 -44.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732059728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.572 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds