Wall clock time and date at job start Tue Mar 31 2020 19:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00279 * 2 1 4 4 C 1.53002 * 109.46758 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46481 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75250 * 125.00134 * 5 4 3 7 7 C 1.38038 * 107.41877 * 179.97438 * 6 5 4 8 8 C 1.47423 * 126.41882 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00150 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47001 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46963 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.89060 * 302.57219 * 13 12 11 15 15 C 1.55156 * 111.00589 * 178.64797 * 13 12 11 16 16 C 1.54328 * 102.94491 * 206.42372 * 15 13 12 17 17 N 1.47027 * 107.26884 * 22.19099 * 16 15 13 18 18 C 1.36928 * 125.64799 * 181.02489 * 17 16 15 19 19 H 1.07998 * 120.00352 * 180.02562 * 18 17 16 20 20 C 1.38815 * 120.00033 * 0.04212 * 18 17 16 21 21 N 1.31618 * 120.00161 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47033 * 89.99665 * 22 20 18 24 24 H 1.48497 * 109.47333 * 210.00104 * 22 20 18 25 25 H 1.48503 * 109.46787 * 330.00000 * 22 20 18 26 26 C 1.47424 * 108.70246 * 1.06265 * 17 16 15 27 27 C 1.41300 * 107.17045 * 359.97438 * 7 6 5 28 28 N 1.30449 * 108.01964 * 359.97438 * 27 7 6 29 29 H 1.08997 * 109.46809 * 300.00507 * 1 2 3 30 30 H 1.08998 * 109.46459 * 60.00038 * 1 2 3 31 31 H 1.08998 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46923 * 59.99654 * 3 2 1 33 33 H 1.08997 * 109.46711 * 299.99782 * 3 2 1 34 34 H 1.08997 * 109.47618 * 60.00163 * 4 3 2 35 35 H 1.08997 * 109.47400 * 299.99444 * 4 3 2 36 36 H 1.07999 * 126.28833 * 359.73609 * 6 5 4 37 37 H 0.97003 * 120.00216 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46639 * 299.99880 * 11 10 8 39 39 H 1.09002 * 109.47125 * 59.99426 * 11 10 8 40 40 H 1.09004 * 109.47368 * 299.99486 * 12 11 10 41 41 H 1.08998 * 109.47705 * 60.00258 * 12 11 10 42 42 H 1.08996 * 110.72151 * 324.78679 * 15 13 12 43 43 H 1.09001 * 110.71807 * 88.06089 * 15 13 12 44 44 H 1.08994 * 109.88017 * 262.77782 * 16 15 13 45 45 H 1.08995 * 110.00906 * 141.68333 * 16 15 13 46 46 H 0.96998 * 120.00111 * 180.02562 * 21 20 18 47 47 H 1.08998 * 110.36506 * 217.03278 * 26 17 16 48 48 H 1.09003 * 110.46056 * 94.75543 * 26 17 16 49 49 H 1.07991 * 125.98958 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0211 2.9859 0.8926 7 6 5.3271 4.2838 0.5359 8 6 6.2622 5.1857 1.2328 9 8 6.8501 4.8026 2.2260 10 7 6.4646 6.4351 0.7698 11 6 7.3942 7.3312 1.4621 12 6 7.4400 8.6776 0.7369 13 6 8.4104 9.6137 1.4603 14 1 8.1198 9.7448 2.5026 15 6 8.5100 10.9810 0.7337 16 6 9.9181 11.4779 1.1235 17 7 10.7065 10.2978 1.5076 18 6 12.0060 10.3121 1.9389 19 1 12.4993 9.3869 2.1980 20 6 12.6894 11.5158 2.0434 21 7 12.0882 12.6435 1.7285 22 14 14.4625 11.5353 2.6311 23 1 15.3721 11.4056 1.4645 24 1 14.7373 12.8147 3.3332 25 1 14.6876 10.4011 3.5629 26 6 9.8665 9.0965 1.3507 27 6 4.5764 4.5861 -0.6223 28 7 3.8709 3.5335 -0.9321 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8575 0.6434 -0.8891 35 1 3.8568 0.6438 0.8909 36 1 5.4207 2.4438 1.7370 37 1 5.9954 6.7409 -0.0222 38 1 7.0577 7.4818 2.4879 39 1 8.3900 6.8879 1.4677 40 1 7.7768 8.5267 -0.2887 41 1 6.4444 9.1212 0.7310 42 1 8.4322 10.8507 -0.3457 43 1 7.7448 11.6672 1.0966 44 1 9.8482 12.1669 1.9651 45 1 10.3861 11.9761 0.2745 46 1 12.5658 13.4846 1.8011 47 1 10.0757 8.3808 2.1457 48 1 10.0342 8.6390 0.3756 49 1 4.5857 5.5239 -1.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732059728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:14 Heat of formation + Delta-G solvation = -10.696893 kcal Electronic energy + Delta-G solvation = -27579.530764 eV Core-core repulsion = 23543.020361 eV Total energy + Delta-G solvation = -4036.510403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.42156 -40.28619 -39.31167 -38.97579 -36.37198 -35.03263 -34.61667 -32.52225 -31.49482 -30.83091 -30.11789 -28.11534 -27.25439 -26.50211 -24.65286 -24.12322 -23.13631 -21.83503 -21.65553 -21.32195 -20.61663 -18.97506 -18.83590 -17.65411 -17.35857 -16.97503 -16.81002 -16.62818 -16.47074 -16.35400 -16.09749 -15.62374 -15.55324 -15.19563 -14.82876 -14.67228 -14.27179 -14.04973 -13.82981 -13.78688 -13.63513 -13.25550 -13.07836 -13.01043 -12.76642 -12.72539 -12.64873 -12.35955 -12.17470 -12.04723 -12.00008 -11.76795 -11.48994 -11.35022 -11.27683 -10.88308 -10.78650 -10.68800 -10.64723 -10.12160 -9.65609 -8.86332 -7.83748 -5.18598 0.49289 1.15018 1.19099 1.45100 1.47208 1.56028 2.34126 2.49490 2.50690 2.72782 3.34041 3.50416 3.71393 3.78648 3.82876 3.84859 3.88950 4.05057 4.11252 4.18698 4.20330 4.29343 4.39566 4.44544 4.44773 4.48412 4.62310 4.65412 4.67273 4.72885 4.76738 4.82698 4.83667 4.96889 5.05753 5.18411 5.22950 5.31819 5.39426 5.46890 5.54985 5.57706 5.74086 5.75008 5.82400 6.01690 6.23140 6.46919 6.70588 7.13196 7.36401 7.81564 8.45747 9.26576 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.001508 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.698785 B =18558.851996 C =19087.353493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.136 3.864 7 C -0.311 4.311 8 C 0.590 3.410 9 O -0.597 6.597 10 N -0.711 5.711 11 C 0.125 3.875 12 C -0.099 4.099 13 C -0.086 4.086 14 H 0.072 0.928 15 C -0.122 4.122 16 C 0.180 3.820 17 N -0.631 5.631 18 C -0.244 4.244 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.951 5.951 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.270 1.270 26 C 0.133 3.867 27 C 0.093 3.907 28 N -0.320 5.320 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.205 0.795 37 H 0.415 0.585 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.006 0.994 45 H 0.003 0.997 46 H 0.246 0.754 47 H 0.032 0.968 48 H 0.025 0.975 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.736 -23.065 -6.471 35.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.138 5.138 6 C -0.016 4.016 7 C -0.326 4.326 8 C 0.379 3.621 9 O -0.479 6.479 10 N -0.362 5.362 11 C 0.001 3.999 12 C -0.137 4.137 13 C -0.105 4.105 14 H 0.090 0.910 15 C -0.160 4.160 16 C 0.055 3.945 17 N -0.358 5.358 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.195 1.195 26 C 0.008 3.992 27 C -0.095 4.095 28 N -0.139 5.139 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.222 0.778 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.025 0.975 45 H 0.022 0.978 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.042 0.958 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -26.996 -24.017 -6.571 36.726 hybrid contribution 1.610 1.194 0.680 2.117 sum -25.386 -22.824 -5.891 34.642 Atomic orbital electron populations 1.22965 0.78700 1.04261 1.00951 1.87755 1.21988 1.27056 1.95681 1.22552 0.92599 0.85264 1.01664 1.21731 0.92530 0.77587 1.07221 1.48489 1.32597 1.12551 1.20135 1.23331 0.89961 0.94118 0.94168 1.20206 1.11212 0.96810 1.04385 1.17545 0.80287 0.81530 0.82699 1.90771 1.52049 1.76653 1.28446 1.45620 1.45867 1.12646 1.32067 1.21265 0.92630 0.89714 0.96245 1.21588 1.00367 0.92266 0.99446 1.22158 0.93716 0.94988 0.99685 0.90969 1.22759 0.96223 0.96565 1.00428 1.20955 0.89021 0.88504 0.96029 1.44845 1.10083 1.03145 1.77692 1.19478 0.88036 0.93455 1.36401 0.90379 1.25642 1.02590 0.95116 1.02632 1.70199 1.36988 0.97284 1.55596 0.85096 0.79665 0.76875 0.77831 1.21207 1.21866 1.19537 1.21831 0.90652 0.89127 0.97567 1.24561 0.92183 0.98618 0.94117 1.77146 1.25157 0.97458 1.14140 0.93150 0.93232 0.87858 0.92593 0.92327 0.87744 0.85013 0.77790 0.74728 0.92335 0.93213 0.89996 0.88341 0.90481 0.89937 0.97534 0.97849 0.94459 0.95003 0.95770 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -4.63 10.70 -148.98 -1.59 -6.22 16 3 C 0.06 0.57 6.12 71.98 0.44 1.01 16 4 C 0.13 1.13 6.86 86.38 0.59 1.72 16 5 N -0.36 -4.95 3.65 -346.29 -1.26 -6.22 16 6 C 0.14 2.10 11.25 84.27 0.95 3.04 16 7 C -0.31 -5.65 6.13 -20.15 -0.12 -5.78 16 8 C 0.59 14.06 7.81 86.66 0.68 14.74 16 9 O -0.60 -19.58 16.90 -4.06 -0.07 -19.65 16 10 N -0.71 -13.52 5.55 -466.36 -2.59 -16.11 16 11 C 0.13 2.95 5.52 86.38 0.48 3.43 16 12 C -0.10 -2.07 4.84 30.59 0.15 -1.92 16 13 C -0.09 -2.69 3.07 -9.40 -0.03 -2.72 16 14 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.12 -4.19 6.42 31.78 0.20 -3.99 16 16 C 0.18 9.05 5.38 86.73 0.47 9.51 16 17 N -0.63 -33.60 3.39 -691.98 -2.35 -35.95 16 18 C -0.24 -14.31 10.28 84.04 0.86 -13.45 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 21 N -0.95 -58.86 10.31 21.65 0.22 -58.64 16 22 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 C 0.13 5.48 5.89 86.86 0.51 6.00 16 27 C 0.09 1.31 11.50 85.65 0.99 2.30 16 28 N -0.32 -5.26 12.33 -56.27 -0.69 -5.95 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.13 0.56 8.06 -2.39 -0.02 0.55 16 36 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.42 4.77 7.43 -92.71 -0.69 4.08 16 38 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.05 1.42 7.46 -2.39 -0.02 1.40 16 40 H 0.08 1.59 8.10 -2.38 -0.02 1.57 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 44 H 0.01 0.36 7.38 -2.39 -0.02 0.35 16 45 H 0.00 0.19 7.50 -2.39 -0.02 0.17 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 47 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 48 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 49 H 0.22 1.42 7.50 -2.92 -0.02 1.40 16 Total: -1.00 -81.82 404.43 1.82 -80.00 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.25 Total: 7.64 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.88 Total: 11.85 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -6.67 Total: -122.87 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.66 Total: -25.87 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -81.82 1.82 -80.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732059728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.308 kcal (2) G-P(sol) polarization free energy of solvation -81.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds