Wall clock time and date at job start Tue Mar 31 2020 19:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30840 * 125.96145 * 2 1 4 4 C 1.33238 * 109.82813 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.52175 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47204 * 90.00007 * 5 4 3 7 7 O 1.21284 * 119.99694 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99954 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00162 * 359.97438 * 8 6 5 10 10 C 1.46504 * 120.00022 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47177 * 89.99941 * 10 8 6 12 12 N 1.46900 * 109.47355 * 180.02562 * 11 10 8 13 13 C 1.46891 * 111.00538 * 169.99723 * 12 11 10 14 14 C 1.53236 * 109.34490 * 187.25409 * 13 12 11 15 15 N 1.47086 * 108.51747 * 306.17144 * 14 13 12 16 16 C 1.36936 * 120.87786 * 231.18160 * 15 14 13 17 17 H 1.07993 * 120.00304 * 27.13527 * 16 15 14 18 18 C 1.38809 * 119.99955 * 206.85385 * 16 15 14 19 19 N 1.31624 * 119.99882 * 17.16531 * 18 16 15 20 20 Si 1.86805 * 120.00166 * 197.16921 * 18 16 15 21 21 H 1.48494 * 109.47060 * 59.99902 * 20 18 16 22 22 H 1.48503 * 109.46870 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46852 * 299.99893 * 20 18 16 24 24 C 1.47083 * 118.23837 * 51.45711 * 15 14 13 25 25 C 1.46900 * 110.99950 * 294.30335 * 12 11 10 26 26 N 1.30712 * 108.94850 * 0.26235 * 4 3 2 27 27 N 1.34427 * 125.96421 * 180.02562 * 2 1 3 28 28 H 0.97002 * 126.81661 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47100 * 89.97572 * 1 2 3 30 30 H 1.09005 * 109.46627 * 209.97969 * 1 2 3 31 31 H 1.09001 * 109.46929 * 329.97607 * 1 2 3 32 32 H 1.08997 * 109.47255 * 330.00078 * 5 4 3 33 33 H 1.09000 * 109.46854 * 209.99413 * 5 4 3 34 34 H 1.08997 * 109.47574 * 269.99820 * 9 8 6 35 35 H 1.08999 * 109.46928 * 30.00897 * 9 8 6 36 36 H 1.09003 * 109.46995 * 149.99661 * 9 8 6 37 37 H 1.08998 * 109.46631 * 330.00384 * 10 8 6 38 38 H 1.08995 * 109.47199 * 210.00013 * 10 8 6 39 39 H 1.08998 * 109.47526 * 60.00124 * 11 10 8 40 40 H 1.09005 * 109.46946 * 300.00160 * 11 10 8 41 41 H 1.09002 * 109.49046 * 67.29429 * 13 12 11 42 42 H 1.08998 * 109.52013 * 307.22889 * 13 12 11 43 43 H 1.08998 * 109.63090 * 186.46185 * 14 13 12 44 44 H 1.09001 * 109.62654 * 65.87812 * 14 13 12 45 45 H 0.97001 * 119.99713 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.62320 * 68.25155 * 24 15 14 47 47 H 1.08997 * 109.62861 * 188.82856 * 24 15 14 48 48 H 1.09000 * 109.49232 * 292.70484 * 25 12 11 49 49 H 1.08999 * 109.49067 * 52.78237 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0002 6 6 5.1315 1.9344 1.4208 7 8 4.5139 1.4444 2.3424 8 7 6.1711 2.7559 1.6674 9 6 6.9182 3.3464 0.5541 10 6 6.5548 3.0575 3.0487 11 6 7.5829 2.0308 3.5282 12 7 7.9673 2.3328 4.9135 13 6 8.7664 1.2424 5.4878 14 6 8.9923 1.5099 6.9797 15 7 9.5730 2.8528 7.1308 16 6 10.7086 3.0483 7.8706 17 1 11.4242 2.2474 7.9833 18 6 10.9428 4.2778 8.4708 19 7 9.9550 5.1342 8.6238 20 14 12.6597 4.7170 9.0614 21 1 13.5994 4.6942 7.9118 22 1 12.6445 6.0756 9.6608 23 1 13.1000 3.7306 10.0804 24 6 8.8980 3.9810 6.4712 25 6 8.6792 3.6152 4.9946 26 7 3.6195 -0.6167 -0.0066 27 7 2.2965 -1.0880 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5136 31 1 -0.3633 0.8898 0.5142 32 1 4.4699 2.5475 -0.5133 33 1 5.5742 1.1514 -0.5145 34 1 7.7407 2.6866 0.2778 35 1 6.2542 3.4768 -0.3004 36 1 7.3155 4.3153 0.8566 37 1 5.6732 3.0147 3.6882 38 1 6.9895 4.0559 3.0953 39 1 8.4646 2.0735 2.8887 40 1 7.1482 1.0323 3.4815 41 1 9.7285 1.1891 4.9781 42 1 8.2364 0.2980 5.3639 43 1 9.6786 0.7665 7.3852 44 1 8.0405 1.4609 7.5086 45 1 10.1188 5.9936 9.0430 46 1 7.9374 4.1649 6.9524 47 1 9.5219 4.8721 6.5405 48 1 9.6424 3.5289 4.4918 49 1 8.0854 4.3920 4.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732064240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:10 Heat of formation + Delta-G solvation = 91.173296 kcal Electronic energy + Delta-G solvation = -28952.554060 eV Core-core repulsion = 24952.753831 eV Total energy + Delta-G solvation = -3999.800229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.44171 -39.96767 -38.06495 -35.85801 -34.34618 -33.94681 -32.66514 -31.65738 -30.55097 -29.85245 -28.99041 -27.96539 -26.87689 -25.65134 -23.45655 -22.54685 -22.10652 -21.45174 -20.77052 -19.19573 -19.03953 -18.17042 -17.36993 -16.79599 -16.29016 -15.88036 -15.77106 -14.96996 -14.73053 -14.55210 -14.38612 -13.95745 -13.71319 -13.58208 -13.46766 -13.38565 -13.30258 -13.17675 -13.14489 -12.86121 -12.61044 -12.45328 -12.16650 -12.11388 -11.74330 -11.36687 -11.02447 -10.88839 -10.69530 -10.46831 -10.40973 -10.31530 -10.25128 -10.00391 -9.98057 -9.70868 -9.66397 -9.57245 -8.78216 -8.46117 -7.75818 -6.61893 -5.74273 -3.15307 1.28673 2.29282 2.43877 2.52419 2.97586 3.40578 3.46034 3.47302 3.61857 4.18155 4.35929 4.43252 4.51138 4.56897 4.79190 4.89087 4.93879 5.01055 5.11661 5.17416 5.27022 5.34760 5.40161 5.43709 5.46113 5.49518 5.65897 5.86662 5.93336 5.96344 6.04640 6.09437 6.16118 6.20542 6.27079 6.36449 6.45825 6.58524 6.73262 6.74369 6.99961 7.21950 7.30265 7.66160 7.69351 7.75205 7.80063 7.86255 8.06648 8.47650 9.25259 9.88726 10.48032 11.34471 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.001951 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.133517 B =14345.722940 C =14656.587837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.531 5.531 4 C 0.250 3.750 5 C -0.047 4.047 6 C 0.520 3.480 7 O -0.522 6.522 8 N -0.615 5.615 9 C 0.074 3.926 10 C 0.120 3.880 11 C 0.045 3.955 12 N -0.530 5.530 13 C 0.048 3.952 14 C 0.149 3.851 15 N -0.596 5.596 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.178 3.822 25 C 0.032 3.968 26 N -0.304 5.304 27 N -0.481 5.481 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.026 0.974 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.254 0.746 46 H 0.027 0.973 47 H 0.088 0.912 48 H 0.024 0.976 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 -7.828 -23.836 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 N -0.260 5.260 4 C -0.033 4.033 5 C -0.089 4.089 6 C 0.306 3.694 7 O -0.397 6.397 8 N -0.349 5.349 9 C -0.069 4.069 10 C -0.003 4.003 11 C -0.085 4.085 12 N -0.255 5.255 13 C -0.082 4.082 14 C 0.022 3.978 15 N -0.319 5.319 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.052 3.948 25 C -0.097 4.097 26 N -0.133 5.133 27 N -0.200 5.200 28 H 0.285 0.715 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.106 0.894 48 H 0.043 0.957 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.742 -7.892 -22.962 28.937 hybrid contribution 1.397 -0.452 -0.223 1.485 sum -14.345 -8.344 -23.185 28.512 Atomic orbital electron populations 1.20402 0.83562 1.05230 1.04454 1.24374 0.96631 0.82744 0.95720 1.70293 1.01225 1.29588 1.24940 1.23252 0.92644 0.89749 0.97649 1.19942 0.93743 0.98719 0.96545 1.20154 0.79955 0.78779 0.90514 1.90765 1.52487 1.50370 1.46071 1.47802 1.31570 1.47832 1.07740 1.21890 0.96581 0.99174 0.89263 1.21545 0.99720 0.98303 0.80695 1.22358 0.96812 0.99329 0.89995 1.61860 1.44030 1.03649 1.16010 1.22589 0.94456 0.92719 0.98426 1.20985 0.96586 0.88811 0.91431 1.44136 1.28613 1.01743 1.57396 1.19148 0.95699 0.98495 1.24716 0.91753 1.25027 0.97443 0.98819 0.98514 1.70027 1.29355 1.09113 1.46324 0.86363 0.84516 0.77385 0.78470 1.21172 1.21624 1.20919 1.20957 0.96523 0.91751 0.85556 1.23049 0.94806 0.89911 1.01908 1.77977 0.96770 1.12184 1.26337 1.47924 1.04219 1.10045 1.57796 0.71464 0.88989 0.89808 0.88220 0.86025 0.86522 0.92349 0.90891 0.90497 0.88884 0.90123 0.95643 0.91267 0.95538 0.92117 0.92633 0.95592 0.93591 0.95473 0.89387 0.95729 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.28 2.61 8.24 -155.69 -1.28 1.33 16 3 N -0.53 -6.61 11.19 -8.16 -0.09 -6.70 16 4 C 0.25 3.16 6.63 -156.86 -1.04 2.12 16 5 C -0.05 -0.46 4.88 -29.03 -0.14 -0.60 16 6 C 0.52 6.91 7.67 -10.98 -0.08 6.82 16 7 O -0.52 -9.44 15.61 5.55 0.09 -9.35 16 8 N -0.61 -7.07 2.87 -181.57 -0.52 -7.60 16 9 C 0.07 0.52 10.28 59.85 0.62 1.14 16 10 C 0.12 1.67 5.38 -4.04 -0.02 1.65 16 11 C 0.04 0.70 5.29 -3.83 -0.02 0.68 16 12 N -0.53 -10.04 4.63 -234.04 -1.08 -11.12 16 13 C 0.05 0.92 5.62 -3.71 -0.02 0.90 16 14 C 0.15 3.33 6.69 -3.60 -0.02 3.31 16 15 N -0.60 -15.55 3.03 -171.73 -0.52 -16.07 16 16 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 17 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 19 N -0.90 -26.60 11.16 55.49 0.62 -25.98 16 20 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.18 4.40 5.45 -3.37 -0.02 4.38 16 25 C 0.03 0.64 5.48 -3.47 -0.02 0.62 16 26 N -0.30 -3.86 12.80 32.42 0.41 -3.44 16 27 N -0.48 -4.37 7.45 32.62 0.24 -4.13 16 28 H 0.44 2.25 8.96 -182.33 -1.63 0.62 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.12 0.87 7.40 -51.93 -0.38 0.49 16 33 H 0.12 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 36 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 37 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 38 H 0.08 1.04 6.15 -51.93 -0.32 0.72 16 39 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.07 1.16 7.97 -51.93 -0.41 0.75 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 43 H 0.06 1.19 7.95 -51.93 -0.41 0.78 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -38.18 394.35 -10.97 -49.15 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -9.12 Total: -2.74 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: -1.91 Total: 15.13 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -0.94 Total: -75.05 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.18 -10.97 -49.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732064240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.320 kcal (2) G-P(sol) polarization free energy of solvation -38.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds