Wall clock time and date at job start Tue Mar 31 2020 19:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30840 * 125.96145 * 2 1 4 4 C 1.33238 * 109.82813 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.52175 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47204 * 90.00007 * 5 4 3 7 7 O 1.21284 * 119.99694 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99954 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00162 * 359.97438 * 8 6 5 10 10 C 1.46504 * 120.00022 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47177 * 89.99941 * 10 8 6 12 12 N 1.46900 * 109.47355 * 180.02562 * 11 10 8 13 13 C 1.46891 * 111.00538 * 169.99723 * 12 11 10 14 14 C 1.53236 * 109.34490 * 187.25409 * 13 12 11 15 15 N 1.47086 * 108.51747 * 306.17144 * 14 13 12 16 16 C 1.36936 * 120.87786 * 231.18160 * 15 14 13 17 17 H 1.07993 * 120.00304 * 27.13527 * 16 15 14 18 18 C 1.38809 * 119.99955 * 206.85385 * 16 15 14 19 19 N 1.31624 * 119.99882 * 17.16531 * 18 16 15 20 20 Si 1.86805 * 120.00166 * 197.16921 * 18 16 15 21 21 H 1.48494 * 109.47060 * 59.99902 * 20 18 16 22 22 H 1.48503 * 109.46870 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46852 * 299.99893 * 20 18 16 24 24 C 1.47083 * 118.23837 * 51.45711 * 15 14 13 25 25 C 1.46900 * 110.99950 * 294.30335 * 12 11 10 26 26 N 1.30712 * 108.94850 * 0.26235 * 4 3 2 27 27 N 1.34427 * 125.96421 * 180.02562 * 2 1 3 28 28 H 0.97002 * 126.81661 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47100 * 89.97572 * 1 2 3 30 30 H 1.09005 * 109.46627 * 209.97969 * 1 2 3 31 31 H 1.09001 * 109.46929 * 329.97607 * 1 2 3 32 32 H 1.08997 * 109.47255 * 330.00078 * 5 4 3 33 33 H 1.09000 * 109.46854 * 209.99413 * 5 4 3 34 34 H 1.08997 * 109.47574 * 269.99820 * 9 8 6 35 35 H 1.08999 * 109.46928 * 30.00897 * 9 8 6 36 36 H 1.09003 * 109.46995 * 149.99661 * 9 8 6 37 37 H 1.08998 * 109.46631 * 330.00384 * 10 8 6 38 38 H 1.08995 * 109.47199 * 210.00013 * 10 8 6 39 39 H 1.08998 * 109.47526 * 60.00124 * 11 10 8 40 40 H 1.09005 * 109.46946 * 300.00160 * 11 10 8 41 41 H 1.09002 * 109.49046 * 67.29429 * 13 12 11 42 42 H 1.08998 * 109.52013 * 307.22889 * 13 12 11 43 43 H 1.08998 * 109.63090 * 186.46185 * 14 13 12 44 44 H 1.09001 * 109.62654 * 65.87812 * 14 13 12 45 45 H 0.97001 * 119.99713 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.62320 * 68.25155 * 24 15 14 47 47 H 1.08997 * 109.62861 * 188.82856 * 24 15 14 48 48 H 1.09000 * 109.49232 * 292.70484 * 25 12 11 49 49 H 1.08999 * 109.49067 * 52.78237 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0002 6 6 5.1315 1.9344 1.4208 7 8 4.5139 1.4444 2.3424 8 7 6.1711 2.7559 1.6674 9 6 6.9182 3.3464 0.5541 10 6 6.5548 3.0575 3.0487 11 6 7.5829 2.0308 3.5282 12 7 7.9673 2.3328 4.9135 13 6 8.7664 1.2424 5.4878 14 6 8.9923 1.5099 6.9797 15 7 9.5730 2.8528 7.1308 16 6 10.7086 3.0483 7.8706 17 1 11.4242 2.2474 7.9833 18 6 10.9428 4.2778 8.4708 19 7 9.9550 5.1342 8.6238 20 14 12.6597 4.7170 9.0614 21 1 13.5994 4.6942 7.9118 22 1 12.6445 6.0756 9.6608 23 1 13.1000 3.7306 10.0804 24 6 8.8980 3.9810 6.4712 25 6 8.6792 3.6152 4.9946 26 7 3.6195 -0.6167 -0.0066 27 7 2.2965 -1.0880 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5136 31 1 -0.3633 0.8898 0.5142 32 1 4.4699 2.5475 -0.5133 33 1 5.5742 1.1514 -0.5145 34 1 7.7407 2.6866 0.2778 35 1 6.2542 3.4768 -0.3004 36 1 7.3155 4.3153 0.8566 37 1 5.6732 3.0147 3.6882 38 1 6.9895 4.0559 3.0953 39 1 8.4646 2.0735 2.8887 40 1 7.1482 1.0323 3.4815 41 1 9.7285 1.1891 4.9781 42 1 8.2364 0.2980 5.3639 43 1 9.6786 0.7665 7.3852 44 1 8.0405 1.4609 7.5086 45 1 10.1188 5.9936 9.0430 46 1 7.9374 4.1649 6.9524 47 1 9.5219 4.8721 6.5405 48 1 9.6424 3.5289 4.4918 49 1 8.0854 4.3920 4.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732064240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:08 Heat of formation + Delta-G solvation = 62.832426 kcal Electronic energy + Delta-G solvation = -28953.783012 eV Core-core repulsion = 24952.753831 eV Total energy + Delta-G solvation = -4001.029181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.18685 -40.98398 -39.67449 -37.07992 -35.95013 -34.73863 -33.45425 -33.36660 -31.66314 -31.59242 -30.09427 -28.66928 -28.02474 -27.00587 -25.12595 -24.29011 -23.30276 -22.41376 -21.67942 -20.86063 -20.08938 -18.89461 -18.76232 -18.23374 -17.47308 -16.89867 -16.74338 -16.52438 -16.08848 -15.89993 -15.51091 -15.33248 -15.15904 -15.00254 -14.94277 -14.46081 -14.36986 -14.07211 -13.88132 -13.65825 -13.62913 -13.29982 -13.24469 -13.02237 -12.99532 -12.88197 -12.74996 -12.59597 -12.45266 -12.16146 -12.03253 -11.83989 -11.57930 -11.39230 -11.29620 -11.12703 -10.90728 -10.58642 -10.46706 -9.76610 -9.27491 -8.69382 -7.87688 -5.33139 0.54925 1.47022 1.49236 1.54227 1.56611 1.59154 1.72992 2.11570 2.50926 2.96947 3.07173 3.27441 3.50574 3.60237 3.66204 3.86086 3.96624 4.09946 4.24399 4.28850 4.32329 4.35982 4.41044 4.46886 4.53178 4.59888 4.67356 4.70176 4.70780 4.76764 4.81355 4.87562 4.96250 4.99139 5.03487 5.05193 5.16690 5.22486 5.33752 5.34588 5.47457 5.60531 5.67746 6.14642 6.19194 6.21498 6.34751 6.37171 7.04931 7.11353 7.12560 7.82284 8.37871 9.19110 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.001951 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.133517 B =14345.722940 C =14656.587837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.569 5.569 4 C 0.234 3.766 5 C -0.040 4.040 6 C 0.516 3.484 7 O -0.581 6.581 8 N -0.610 5.610 9 C 0.064 3.936 10 C 0.127 3.873 11 C 0.056 3.944 12 N -0.545 5.545 13 C 0.059 3.941 14 C 0.145 3.855 15 N -0.614 5.614 16 C -0.266 4.266 17 H 0.067 0.933 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.276 1.276 24 C 0.184 3.816 25 C 0.051 3.949 26 N -0.339 5.339 27 N -0.476 5.476 28 H 0.455 0.545 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.011 0.989 45 H 0.251 0.749 46 H -0.004 1.004 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 -8.198 -26.405 31.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.299 5.299 4 C -0.050 4.050 5 C -0.082 4.082 6 C 0.304 3.696 7 O -0.460 6.460 8 N -0.343 5.343 9 C -0.077 4.077 10 C 0.003 3.997 11 C -0.073 4.073 12 N -0.271 5.271 13 C -0.071 4.071 14 C 0.019 3.981 15 N -0.338 5.338 16 C -0.396 4.396 17 H 0.085 0.915 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.799 3.201 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.202 1.202 24 C 0.058 3.942 25 C -0.078 4.078 26 N -0.169 5.169 27 N -0.196 5.196 28 H 0.303 0.697 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.029 0.971 45 H 0.060 0.940 46 H 0.014 0.986 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.502 -8.293 -25.586 31.044 hybrid contribution 1.224 -0.401 0.589 1.417 sum -14.278 -8.694 -24.997 30.072 Atomic orbital electron populations 1.20647 0.80114 1.06299 1.06276 1.25252 0.98325 0.82051 0.93635 1.70296 1.01669 1.31274 1.26671 1.23749 0.93544 0.90137 0.97537 1.20069 0.93933 0.99837 0.94369 1.20783 0.79492 0.77993 0.91371 1.90735 1.54540 1.52744 1.48011 1.47874 1.31341 1.47268 1.07768 1.22248 0.97266 0.99591 0.88563 1.21310 0.97923 0.98471 0.81987 1.22274 0.97586 0.99228 0.88174 1.61782 1.43723 1.03123 1.18457 1.22405 0.94994 0.93725 0.95927 1.21101 0.95732 0.87451 0.93823 1.44428 1.28583 1.03186 1.57584 1.19493 0.96533 0.98817 1.24800 0.91538 1.25837 1.01098 0.98732 0.99035 1.70195 1.31311 1.09287 1.47344 0.85280 0.79898 0.76781 0.78093 1.20285 1.21848 1.20226 1.20751 0.94122 0.90844 0.88470 1.22728 0.95526 0.91253 0.98259 1.77855 0.98854 1.12626 1.27589 1.47871 1.03303 1.11013 1.57397 0.69692 0.86609 0.87262 0.88545 0.83221 0.83873 0.91031 0.87920 0.89517 0.91995 0.88616 0.93972 0.92388 0.95348 0.90047 0.91994 0.97096 0.93967 0.98577 0.92051 0.95669 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.29 4.96 8.24 138.22 1.14 6.10 16 3 N -0.57 -13.86 11.19 -179.72 -2.01 -15.87 16 4 C 0.23 5.76 6.63 138.63 0.92 6.68 16 5 C -0.04 -0.72 4.88 29.10 0.14 -0.58 16 6 C 0.52 13.24 7.67 87.66 0.67 13.92 16 7 O -0.58 -21.47 15.61 -3.04 -0.05 -21.52 16 8 N -0.61 -12.88 2.87 -846.76 -2.43 -15.31 16 9 C 0.06 0.68 10.28 127.77 1.31 1.99 16 10 C 0.13 3.40 5.38 86.38 0.46 3.86 16 11 C 0.06 1.69 5.29 86.30 0.46 2.14 16 12 N -0.55 -20.23 4.63 -894.35 -4.14 -24.37 16 13 C 0.06 2.22 5.62 86.38 0.49 2.70 16 14 C 0.14 6.55 6.69 86.35 0.58 7.13 16 15 N -0.61 -32.60 3.03 -697.25 -2.11 -34.72 16 16 C -0.27 -15.14 9.63 84.03 0.81 -14.33 16 17 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 18 C -0.05 -2.95 4.93 84.86 0.42 -2.53 16 19 N -0.94 -56.45 11.16 21.65 0.24 -56.20 16 20 Si 0.97 45.43 29.59 68.60 2.03 47.46 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 C 0.18 9.31 5.45 86.50 0.47 9.78 16 25 C 0.05 2.00 5.48 86.54 0.47 2.47 16 26 N -0.34 -8.50 12.80 -51.34 -0.66 -9.16 16 27 N -0.48 -8.29 7.45 -50.70 -0.38 -8.67 16 28 H 0.45 4.22 8.96 -213.09 -1.91 2.31 16 29 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.15 1.72 7.40 -2.39 -0.02 1.70 16 33 H 0.14 1.71 8.11 -2.39 -0.02 1.69 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 0.50 6.44 -2.39 -0.02 0.48 16 36 H 0.09 0.79 7.89 -2.39 -0.02 0.78 16 37 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 38 H 0.10 2.26 6.15 -2.39 -0.01 2.24 16 39 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 40 H 0.06 1.89 7.97 -2.38 -0.02 1.88 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 2.73 7.99 -2.39 -0.02 2.71 16 43 H 0.06 2.66 7.95 -2.39 -0.02 2.64 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.06 3.41 6.12 -2.39 -0.01 3.40 16 48 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.09 2.91 6.16 -2.39 -0.01 2.89 16 Total: -1.00 -86.63 394.35 -1.36 -88.00 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -0.95 Total: 10.72 kcal Atomic # 6 Polarization: 30.55 SS G_CDS: 9.09 Total: 39.64 kcal Atomic # 7 Polarization: -152.81 SS G_CDS: -11.49 Total: -164.30 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -86.63 -1.36 -88.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732064240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.829 kcal (2) G-P(sol) polarization free energy of solvation -86.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds