Wall clock time and date at job start Tue Mar 31 2020 20:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 89.97721 * 9 8 7 11 11 O 1.21276 * 120.00077 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99790 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00256 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47037 * 325.00450 * 13 12 10 15 15 C 1.53000 * 109.47430 * 204.99854 * 13 12 10 16 16 N 1.46498 * 109.46687 * 55.00419 * 15 13 12 17 17 C 1.36942 * 119.99425 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99627 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99812 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47052 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47057 * 120.00033 * 21 19 17 24 24 H 1.48506 * 109.46602 * 240.00133 * 21 19 17 25 25 C 1.53005 * 109.47016 * 84.99957 * 13 12 10 26 26 C 1.53002 * 117.49706 * 8.74974 * 25 13 12 27 27 C 1.53002 * 117.49730 * 300.09374 * 25 13 12 28 28 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 39 39 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 40 40 H 0.97004 * 120.00075 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.46674 * 175.00087 * 15 13 12 42 42 H 1.08995 * 109.46927 * 294.99899 * 15 13 12 43 43 H 0.96993 * 120.00303 * 359.97438 * 16 15 13 44 44 H 0.97003 * 119.99357 * 179.97438 * 20 19 17 45 45 H 1.08994 * 115.55091 * 154.41933 * 25 13 12 46 46 H 1.08998 * 117.50239 * 359.97438 * 26 25 13 47 47 H 1.08997 * 117.49949 * 145.02318 * 26 25 13 48 48 H 1.09009 * 117.49589 * 214.98030 * 27 25 13 49 49 H 1.08997 * 117.50031 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 6 4.9546 -0.8609 -4.3372 11 8 4.3057 0.1611 -4.4097 12 7 6.0447 -1.0234 -5.1129 13 6 6.4455 0.0343 -6.0440 14 1 5.5567 0.5220 -6.4442 15 6 7.2531 -0.5755 -7.1915 16 7 6.4750 -1.6447 -7.8220 17 6 6.9979 -2.3394 -8.8800 18 1 7.9836 -2.0987 -9.2498 19 6 6.2608 -3.3529 -9.4771 20 7 5.0592 -3.6458 -9.0267 21 14 6.9742 -4.3010 -10.9199 22 1 8.3302 -3.7817 -11.2315 23 1 7.0635 -5.7413 -10.5700 24 1 6.0958 -4.1330 -12.1054 25 6 7.3041 1.0641 -5.3070 26 6 7.7472 0.7247 -3.8824 27 6 6.6721 1.7888 -4.1169 28 7 3.2573 -0.8636 -1.5060 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 5.3468 -2.1309 -2.6676 39 1 4.3358 -2.8636 -3.9362 40 1 6.5635 -1.8410 -5.0552 41 1 7.4754 0.1956 -7.9292 42 1 8.1850 -0.9853 -6.8022 43 1 5.5895 -1.8606 -7.4901 44 1 4.5441 -4.3537 -9.4443 45 1 7.9986 1.6287 -5.9290 46 1 7.4267 -0.2320 -3.4701 47 1 8.7331 1.0664 -3.5672 48 1 6.9512 2.8302 -3.9558 49 1 5.6446 1.5322 -3.8592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733171572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:17 Heat of formation + Delta-G solvation = 128.104550 kcal Electronic energy + Delta-G solvation = -29750.435428 eV Core-core repulsion = 25752.236659 eV Total energy + Delta-G solvation = -3998.198769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.27871 -39.98395 -37.92262 -37.11475 -34.87883 -33.51468 -33.29765 -33.08457 -31.22085 -29.60418 -28.06225 -27.98391 -27.59666 -24.59163 -24.06655 -22.77089 -22.22561 -21.46186 -20.81148 -20.48796 -19.63330 -17.56364 -17.27009 -17.14760 -16.51097 -16.13783 -15.82849 -14.85383 -14.71009 -14.56042 -14.51744 -14.32052 -13.83311 -13.63790 -13.42432 -13.26115 -13.16420 -12.91675 -12.89150 -12.75643 -12.28552 -12.22098 -12.09586 -11.88141 -11.87342 -11.63201 -11.43252 -11.32074 -11.14648 -10.87721 -10.82235 -10.81558 -10.76655 -10.25385 -10.16596 -10.04158 -9.78256 -9.56915 -9.49125 -8.90703 -8.64301 -6.94556 -5.76127 -3.06279 1.31864 1.80485 2.23161 2.85456 3.41874 3.44285 3.49395 3.51805 3.76866 4.05151 4.11437 4.12379 4.21980 4.55056 4.57382 4.90050 4.94633 4.97759 5.01574 5.05445 5.14797 5.18810 5.20401 5.22554 5.22684 5.26548 5.47607 5.51485 5.55930 5.58713 5.65001 5.67772 5.77124 5.81934 5.85597 5.94930 6.03520 6.04595 6.24319 6.26638 6.33822 6.49818 6.54037 6.70828 6.94086 7.70280 7.81576 8.41306 8.48635 8.49489 9.53328 10.08867 10.44322 11.45965 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014643 B = 0.002767 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.761410 B =10117.728102 C =11552.856351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.133 5.133 6 N -0.065 5.065 7 N -0.270 5.270 8 C 0.191 3.809 9 C -0.048 4.048 10 C 0.525 3.475 11 O -0.535 6.535 12 N -0.705 5.705 13 C 0.170 3.830 14 H 0.091 0.909 15 C 0.148 3.852 16 N -0.732 5.732 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.160 4.160 26 C -0.175 4.175 27 C -0.187 4.187 28 N -0.297 5.297 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.407 0.593 41 H 0.033 0.967 42 H 0.027 0.973 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 8.516 24.092 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.099 3.901 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.047 5.047 6 N -0.058 5.058 7 N -0.141 5.141 8 C -0.092 4.092 9 C -0.091 4.091 10 C 0.309 3.691 11 O -0.412 6.412 12 N -0.356 5.356 13 C 0.065 3.935 14 H 0.108 0.892 15 C 0.020 3.980 16 N -0.377 5.377 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.179 4.179 26 C -0.213 4.213 27 C -0.224 4.224 28 N -0.148 5.148 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.242 0.758 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.127 0.873 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.137 9.279 24.045 26.103 hybrid contribution 0.892 -1.045 -0.923 1.655 sum -3.245 8.234 23.122 24.758 Atomic orbital electron populations 1.22082 0.90233 1.04549 1.04211 1.21316 0.96350 0.92753 0.79708 1.22222 1.03353 0.92191 1.03909 1.22219 1.03258 1.01000 0.95089 1.50379 1.01215 1.35150 1.17946 1.78910 1.22061 1.09167 0.95618 1.75874 1.00809 1.18623 1.18801 1.24591 0.94860 0.98406 0.91317 1.19900 0.91794 0.99942 0.97458 1.20001 0.80467 0.87603 0.81011 1.90646 1.53101 1.29338 1.68143 1.45872 1.28326 1.21261 1.40154 1.20746 0.97641 0.86668 0.88423 0.89150 1.20904 0.93780 0.91753 0.91531 1.42357 1.18881 1.38704 1.37720 1.19238 0.99852 1.11408 1.06879 0.91116 1.24757 0.96526 0.99657 0.99863 1.69679 1.11017 1.33554 1.43405 0.86132 0.78009 0.79700 0.82396 1.20602 1.21877 1.21897 1.22699 1.02732 1.01734 0.90782 1.22870 0.98852 1.00405 0.99146 1.23317 1.00018 0.96508 1.02566 1.74504 1.03209 1.19436 1.17609 0.90551 0.89427 0.90628 0.89415 0.90411 0.91290 0.91462 0.90457 0.89340 0.86278 0.85170 0.75798 0.94895 0.95547 0.77942 0.93490 0.87324 0.89008 0.89570 0.89927 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.91 37.16 0.29 -0.70 16 2 C 0.18 1.48 1.30 -131.82 -0.17 1.31 16 3 C -0.16 -1.14 8.66 37.15 0.32 -0.82 16 4 C -0.16 -0.95 8.67 37.16 0.32 -0.63 16 5 N -0.13 -1.72 3.73 0.48 0.00 -1.71 16 6 N -0.07 -1.00 12.24 60.35 0.74 -0.26 16 7 N -0.27 -4.72 12.50 32.45 0.41 -4.31 16 8 C 0.19 2.97 6.86 -156.62 -1.07 1.89 16 9 C -0.05 -0.63 6.33 -29.03 -0.18 -0.82 16 10 C 0.52 8.39 6.66 -10.99 -0.07 8.32 16 11 O -0.53 -10.35 13.06 5.56 0.07 -10.28 16 12 N -0.71 -10.79 3.05 -53.81 -0.16 -10.96 16 13 C 0.17 2.84 2.59 -67.93 -0.18 2.66 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 15 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 16 N -0.73 -17.89 5.43 -59.91 -0.33 -18.22 16 17 C -0.24 -6.64 9.99 -15.05 -0.15 -6.79 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 C -0.16 -2.26 5.71 -90.62 -0.52 -2.78 16 26 C -0.18 -2.21 9.74 -26.69 -0.26 -2.47 16 27 C -0.19 -2.63 9.82 -26.69 -0.26 -2.89 16 28 N -0.30 -4.22 11.83 32.47 0.38 -3.83 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.41 5.74 8.60 -40.82 -0.35 5.39 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.39 10.11 7.33 -40.82 -0.30 9.82 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 46 H 0.09 1.14 6.67 -51.93 -0.35 0.79 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 49 H 0.12 1.91 5.01 -51.93 -0.26 1.65 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -35.08 402.89 -7.12 -42.21 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.96 Total: 12.55 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.05 Total: -1.32 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: 1.76 Total: -66.45 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.08 -7.12 -42.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733171572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.313 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds