Wall clock time and date at job start Tue Mar 31 2020 20:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 89.97721 * 9 8 7 11 11 O 1.21276 * 120.00077 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99790 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00256 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47037 * 325.00450 * 13 12 10 15 15 C 1.53000 * 109.47430 * 204.99854 * 13 12 10 16 16 N 1.46498 * 109.46687 * 55.00419 * 15 13 12 17 17 C 1.36942 * 119.99425 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99627 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99908 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99812 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47052 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47057 * 120.00033 * 21 19 17 24 24 H 1.48506 * 109.46602 * 240.00133 * 21 19 17 25 25 C 1.53005 * 109.47016 * 84.99957 * 13 12 10 26 26 C 1.53002 * 117.49706 * 8.74974 * 25 13 12 27 27 C 1.53002 * 117.49730 * 300.09374 * 25 13 12 28 28 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 39 39 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 40 40 H 0.97004 * 120.00075 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.46674 * 175.00087 * 15 13 12 42 42 H 1.08995 * 109.46927 * 294.99899 * 15 13 12 43 43 H 0.96993 * 120.00303 * 359.97438 * 16 15 13 44 44 H 0.97003 * 119.99357 * 179.97438 * 20 19 17 45 45 H 1.08994 * 115.55091 * 154.41933 * 25 13 12 46 46 H 1.08998 * 117.50239 * 359.97438 * 26 25 13 47 47 H 1.08997 * 117.49949 * 145.02318 * 26 25 13 48 48 H 1.09009 * 117.49589 * 214.98030 * 27 25 13 49 49 H 1.08997 * 117.50031 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 6 4.9546 -0.8609 -4.3372 11 8 4.3057 0.1611 -4.4097 12 7 6.0447 -1.0234 -5.1129 13 6 6.4455 0.0343 -6.0440 14 1 5.5567 0.5220 -6.4442 15 6 7.2531 -0.5755 -7.1915 16 7 6.4750 -1.6447 -7.8220 17 6 6.9979 -2.3394 -8.8800 18 1 7.9836 -2.0987 -9.2498 19 6 6.2608 -3.3529 -9.4771 20 7 5.0592 -3.6458 -9.0267 21 14 6.9742 -4.3010 -10.9199 22 1 8.3302 -3.7817 -11.2315 23 1 7.0635 -5.7413 -10.5700 24 1 6.0958 -4.1330 -12.1054 25 6 7.3041 1.0641 -5.3070 26 6 7.7472 0.7247 -3.8824 27 6 6.6721 1.7888 -4.1169 28 7 3.2573 -0.8636 -1.5060 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 5.3468 -2.1309 -2.6676 39 1 4.3358 -2.8636 -3.9362 40 1 6.5635 -1.8410 -5.0552 41 1 7.4754 0.1956 -7.9292 42 1 8.1850 -0.9853 -6.8022 43 1 5.5895 -1.8606 -7.4901 44 1 4.5441 -4.3537 -9.4443 45 1 7.9986 1.6287 -5.9290 46 1 7.4267 -0.2320 -3.4701 47 1 8.7331 1.0664 -3.5672 48 1 6.9512 2.8302 -3.9558 49 1 5.6446 1.5322 -3.8592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733171572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:16 Heat of formation + Delta-G solvation = 103.767293 kcal Electronic energy + Delta-G solvation = -29751.490771 eV Core-core repulsion = 25752.236659 eV Total energy + Delta-G solvation = -3999.254112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.37614 -41.27405 -38.74121 -38.30731 -36.52734 -34.83907 -34.60890 -34.14643 -33.02837 -30.87623 -29.37419 -28.51194 -28.37119 -25.95014 -25.60164 -23.97294 -23.42255 -22.93611 -21.90806 -21.49203 -20.90356 -19.26774 -18.57531 -18.02485 -17.70976 -17.37330 -17.19405 -16.54941 -15.76334 -15.72567 -15.34952 -15.23371 -15.12902 -15.12159 -14.83479 -14.55728 -14.46848 -14.01774 -13.65849 -13.43208 -13.23239 -13.20491 -13.09367 -12.90209 -12.85194 -12.81651 -12.72030 -12.64561 -12.55467 -12.24775 -12.13768 -12.02161 -11.92434 -11.84964 -11.81196 -11.38371 -11.19154 -10.97810 -10.82989 -10.71310 -9.96283 -8.98391 -7.91342 -5.20989 0.22646 0.94411 1.05862 1.49854 1.50850 1.59625 1.60614 2.21910 2.57868 2.80851 2.98105 3.17953 3.43039 3.53088 3.59454 3.62509 3.67214 3.81345 4.00720 4.12670 4.19635 4.21709 4.40820 4.44271 4.46566 4.49994 4.53102 4.54284 4.60971 4.64372 4.70409 4.71896 4.73175 4.79109 4.85451 4.92127 5.02184 5.07124 5.12030 5.17671 5.22182 5.29273 5.37580 5.39972 5.53586 5.59374 6.28983 6.56282 7.24431 7.35054 7.36600 8.10012 8.33724 9.31563 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014643 B = 0.002767 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.761410 B =10117.728102 C =11552.856351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 C -0.154 4.154 4 C -0.151 4.151 5 N -0.118 5.118 6 N -0.081 5.081 7 N -0.315 5.315 8 C 0.178 3.822 9 C -0.043 4.043 10 C 0.524 3.476 11 O -0.572 6.572 12 N -0.698 5.698 13 C 0.181 3.819 14 H 0.055 0.945 15 C 0.151 3.849 16 N -0.743 5.743 17 C -0.240 4.240 18 H 0.080 0.920 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.300 1.300 25 C -0.166 4.166 26 C -0.155 4.155 27 C -0.193 4.193 28 N -0.297 5.297 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.414 0.586 41 H 0.035 0.965 42 H 0.045 0.955 43 H 0.374 0.626 44 H 0.249 0.751 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.110 0.890 48 H 0.098 0.902 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 9.111 26.223 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.082 3.918 3 C -0.212 4.212 4 C -0.209 4.209 5 N -0.034 5.034 6 N -0.073 5.073 7 N -0.184 5.184 8 C -0.105 4.105 9 C -0.085 4.085 10 C 0.310 3.690 11 O -0.452 6.452 12 N -0.350 5.350 13 C 0.076 3.924 14 H 0.073 0.927 15 C 0.025 3.975 16 N -0.386 5.386 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.220 1.220 24 H -0.227 1.227 25 C -0.186 4.186 26 C -0.192 4.192 27 C -0.230 4.230 28 N -0.148 5.148 29 H 0.077 0.923 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.144 0.856 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.251 0.749 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.207 0.793 44 H 0.058 0.942 45 H 0.141 0.859 46 H 0.112 0.888 47 H 0.129 0.871 48 H 0.116 0.884 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.330 9.887 26.185 28.087 hybrid contribution 0.323 -1.089 -1.479 1.865 sum -2.006 8.798 24.706 26.303 Atomic orbital electron populations 1.22139 0.88884 1.04444 1.05297 1.22030 0.97587 0.93261 0.78960 1.22250 1.02534 0.91543 1.04894 1.22246 1.02698 1.00888 0.95094 1.50996 1.00702 1.33572 1.18128 1.78814 1.22322 1.09957 0.96184 1.75818 1.01944 1.20410 1.20261 1.24958 0.94969 0.98726 0.91858 1.20000 0.92240 0.98689 0.97609 1.20437 0.79897 0.87658 0.81045 1.90636 1.54155 1.31070 1.69321 1.45786 1.28342 1.21266 1.39560 1.20447 0.96331 0.87254 0.88393 0.92667 1.21025 0.94026 0.90427 0.92068 1.42535 1.18827 1.39696 1.37557 1.19647 0.99891 1.10789 1.06894 0.90254 1.25546 0.97060 1.01263 1.02800 1.69841 1.12506 1.34386 1.45020 0.85100 0.77776 0.78111 0.78896 1.18855 1.22011 1.22738 1.22605 1.02959 1.01514 0.91524 1.22976 0.99313 0.99900 0.96982 1.23225 0.99204 0.97860 1.02690 1.74467 1.03894 1.19172 1.17247 0.92262 0.85479 0.91334 0.85366 0.91632 0.93312 0.92059 0.91301 0.85564 0.82440 0.84544 0.74902 0.94763 0.93712 0.79342 0.94187 0.85882 0.88775 0.87134 0.88387 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.91 71.98 0.57 -1.18 16 2 C 0.16 2.45 1.30 3.60 0.00 2.45 16 3 C -0.15 -2.01 8.66 71.98 0.62 -1.39 16 4 C -0.15 -1.50 8.67 71.98 0.62 -0.87 16 5 N -0.12 -3.06 3.73 -152.40 -0.57 -3.63 16 6 N -0.08 -2.59 12.24 37.02 0.45 -2.13 16 7 N -0.31 -11.46 12.50 -51.26 -0.64 -12.10 16 8 C 0.18 5.64 6.86 138.55 0.95 6.59 16 9 C -0.04 -1.13 6.33 29.10 0.18 -0.95 16 10 C 0.52 17.02 6.66 87.66 0.58 17.60 16 11 O -0.57 -23.04 13.06 -3.02 -0.04 -23.08 16 12 N -0.70 -21.29 3.05 -442.54 -1.35 -22.65 16 13 C 0.18 6.05 2.59 44.99 0.12 6.17 16 14 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 15 C 0.15 5.69 5.80 86.38 0.50 6.19 16 16 N -0.74 -36.44 5.43 -343.46 -1.87 -38.31 16 17 C -0.24 -13.04 9.99 84.03 0.84 -12.20 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 19 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 20 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 21 Si 0.97 45.85 29.55 68.60 2.03 47.87 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 C -0.17 -4.48 5.71 -10.79 -0.06 -4.54 16 26 C -0.15 -3.50 9.74 30.62 0.30 -3.20 16 27 C -0.19 -5.21 9.82 30.62 0.30 -4.91 16 28 N -0.30 -8.46 11.83 -51.20 -0.61 -9.06 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.14 3.41 8.14 -2.38 -0.02 3.39 16 40 H 0.41 11.36 8.60 -92.71 -0.80 10.56 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.37 20.05 7.33 -92.71 -0.68 19.37 16 44 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 46 H 0.09 2.09 6.67 -2.39 -0.02 2.08 16 47 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 49 H 0.09 2.96 5.01 -2.39 -0.01 2.95 16 Total: -1.00 -78.80 402.89 3.19 -75.62 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: -0.51 Total: 40.35 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.00 Total: 6.03 kcal Atomic # 7 Polarization: -142.49 SS G_CDS: -4.30 Total: -146.79 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.08 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -78.80 3.19 -75.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733171572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.382 kcal (2) G-P(sol) polarization free energy of solvation -78.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds