Wall clock time and date at job start Tue Mar 31 2020 20:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.53007 * 109.46797 * 240.00139 * 2 1 3 5 5 N 1.46498 * 109.46832 * 120.00253 * 2 1 3 6 6 N 1.28781 * 125.45304 * 359.97438 * 5 2 1 7 7 N 1.28998 * 108.72936 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35114 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54975 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47148 * 90.02309 * 9 8 7 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.28037 * 10 9 8 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 9 14 14 H 1.09007 * 109.47747 * 35.00142 * 13 12 10 15 15 C 1.53006 * 109.47036 * 154.99621 * 13 12 10 16 16 N 1.46503 * 109.47121 * 305.00021 * 15 13 12 17 17 C 1.36931 * 119.99753 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00733 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99940 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00059 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.46857 * 119.99970 * 21 19 17 24 24 H 1.48496 * 109.46848 * 239.99675 * 21 19 17 25 25 C 1.53001 * 109.47313 * 274.99614 * 13 12 10 26 26 C 1.52999 * 117.49728 * 128.74937 * 25 13 12 27 27 C 1.53004 * 117.49736 * 60.08890 * 25 13 12 28 28 N 1.28886 * 125.44755 * 180.30405 * 5 2 1 29 29 H 1.08994 * 109.47100 * 300.00245 * 1 2 3 30 30 H 1.09006 * 109.47084 * 59.99742 * 1 2 3 31 31 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46646 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47650 * 299.99722 * 3 2 1 34 34 H 1.09001 * 109.46970 * 60.00699 * 3 2 1 35 35 H 1.08990 * 109.47122 * 300.00180 * 4 2 1 36 36 H 1.09001 * 109.46954 * 60.00587 * 4 2 1 37 37 H 1.09000 * 109.46839 * 179.97438 * 4 2 1 38 38 H 1.09009 * 109.46601 * 330.02331 * 9 8 7 39 39 H 1.08998 * 109.47035 * 210.02838 * 9 8 7 40 40 H 0.97000 * 119.99894 * 359.71837 * 12 10 9 41 41 H 1.08997 * 109.46872 * 65.00091 * 15 13 12 42 42 H 1.08994 * 109.47319 * 185.00068 * 15 13 12 43 43 H 0.97001 * 119.99637 * 359.97438 * 16 15 13 44 44 H 0.96990 * 120.00209 * 180.02562 * 20 19 17 45 45 H 1.08999 * 115.54475 * 274.42103 * 25 13 12 46 46 H 1.08998 * 117.50367 * 0.02562 * 26 25 13 47 47 H 1.09005 * 117.49367 * 145.02665 * 26 25 13 48 48 H 1.08997 * 117.49369 * 214.98090 * 27 25 13 49 49 H 1.08998 * 117.49759 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2782 -1.2172 2.1090 7 7 2.0399 -1.7375 3.0108 8 6 3.3016 -1.5229 2.6376 9 6 4.5420 -1.9513 3.3786 10 6 4.9550 -3.3245 2.9150 11 8 4.3062 -3.8985 2.0661 12 7 6.0422 -3.9168 3.4475 13 6 6.4402 -5.2541 3.0012 14 1 6.2234 -5.3621 1.9384 15 6 7.9397 -5.4455 3.2377 16 7 8.6796 -4.3658 2.5796 17 6 10.0463 -4.3273 2.6553 18 1 10.5788 -5.0926 3.2005 19 6 10.7474 -3.3040 2.0322 20 7 10.0985 -2.3710 1.3682 21 14 12.6118 -3.2518 2.1348 22 1 13.0962 -4.4069 2.9326 23 1 13.1850 -3.3195 0.7665 24 1 13.0364 -1.9873 2.7873 25 6 5.6608 -6.3081 3.7903 26 6 4.9346 -7.3934 2.9930 27 6 4.1347 -6.2855 3.6830 28 7 3.2573 -0.8633 1.5062 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 4.3356 -1.9758 4.4487 39 1 5.3466 -1.2434 3.1799 40 1 6.5613 -3.4575 4.1262 41 1 8.1440 -5.4261 4.3082 42 1 8.2531 -6.4046 2.8254 43 1 8.2013 -3.6783 2.0903 44 1 10.5883 -1.6562 0.9326 45 1 6.0938 -6.5927 4.7492 46 1 5.0123 -7.3569 1.9064 47 1 4.8893 -8.3920 3.4278 48 1 3.5638 -6.5556 4.5713 49 1 3.6860 -5.5194 3.0506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733171573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:22 Heat of formation + Delta-G solvation = 122.923276 kcal Electronic energy + Delta-G solvation = -29632.199393 eV Core-core repulsion = 25633.775947 eV Total energy + Delta-G solvation = -3998.423446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.26420 -39.78256 -37.86562 -37.13592 -34.98793 -33.49206 -33.37399 -33.09841 -31.17831 -29.59860 -27.98830 -27.89378 -27.51397 -24.56853 -24.04630 -22.74676 -22.06669 -21.47819 -20.75851 -20.40926 -19.96459 -17.55457 -17.21270 -17.12013 -16.49098 -16.09826 -15.47272 -15.00442 -14.72036 -14.51017 -14.41824 -14.32673 -13.91286 -13.61040 -13.46998 -13.22770 -13.10466 -12.87196 -12.83311 -12.71843 -12.29554 -12.21029 -12.02904 -11.88475 -11.82430 -11.63883 -11.39109 -11.12481 -11.02373 -10.89737 -10.83185 -10.81205 -10.73922 -10.18660 -10.15157 -10.06600 -9.91284 -9.69167 -9.44880 -8.93013 -8.61143 -6.97171 -5.79337 -3.09052 1.34513 1.83875 2.23241 2.89192 3.39631 3.41904 3.47436 3.49384 3.80307 4.07754 4.18079 4.22026 4.28556 4.54752 4.58806 4.92647 4.99423 5.03336 5.06061 5.13091 5.21032 5.21982 5.26753 5.27308 5.30989 5.33497 5.47392 5.51809 5.55399 5.56856 5.71652 5.75852 5.81173 5.83645 5.89465 5.93989 5.97946 6.13004 6.25282 6.29296 6.39945 6.50337 6.57992 6.69165 6.95567 7.67789 7.85442 8.38364 8.49052 8.53023 9.50463 10.06015 10.41696 11.42944 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003092 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.396028 B = 9052.689134 C =11034.802157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.180 3.820 3 C -0.158 4.158 4 C -0.160 4.160 5 N -0.131 5.131 6 N -0.068 5.068 7 N -0.279 5.279 8 C 0.191 3.809 9 C -0.047 4.047 10 C 0.527 3.473 11 O -0.539 6.539 12 N -0.704 5.704 13 C 0.170 3.830 14 H 0.087 0.913 15 C 0.148 3.852 16 N -0.732 5.732 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.162 4.162 26 C -0.172 4.172 27 C -0.183 4.183 28 N -0.290 5.290 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.406 0.594 41 H 0.026 0.974 42 H 0.035 0.965 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.235 4.631 0.308 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.099 3.901 3 C -0.217 4.217 4 C -0.218 4.218 5 N -0.045 5.045 6 N -0.060 5.060 7 N -0.150 5.150 8 C -0.093 4.093 9 C -0.090 4.090 10 C 0.311 3.689 11 O -0.417 6.417 12 N -0.354 5.354 13 C 0.066 3.934 14 H 0.105 0.895 15 C 0.020 3.980 16 N -0.377 5.377 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.182 4.182 26 C -0.210 4.210 27 C -0.220 4.220 28 N -0.140 5.140 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.241 0.759 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.220 0.780 44 H 0.064 0.936 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.172 4.274 -0.414 20.624 hybrid contribution 1.776 0.372 0.295 1.838 sum -18.397 4.646 -0.120 18.975 Atomic orbital electron populations 1.22075 0.90290 1.04543 1.04038 1.21342 0.96227 0.92692 0.79887 1.22229 1.03569 0.92100 1.03780 1.22237 1.03693 1.01068 0.94811 1.50392 1.01216 1.34941 1.17961 1.78841 1.22088 1.09452 0.95641 1.75771 1.00798 1.18197 1.20213 1.24601 0.94704 0.98272 0.91676 1.19891 0.92123 0.96520 1.00504 1.19976 0.80679 0.86534 0.81700 1.90636 1.53559 1.65316 1.32166 1.45843 1.28144 1.18403 1.43001 1.20791 0.94368 0.79801 0.98452 0.89523 1.20920 0.87385 0.93261 0.96418 1.42355 1.03804 1.28379 1.63115 1.19255 0.82763 1.07654 1.27548 0.91085 1.24746 0.97891 0.97692 1.00499 1.69673 1.34182 1.15084 1.38904 0.86128 0.85668 0.77238 0.77194 1.20568 1.21900 1.21877 1.22648 0.94429 1.00116 1.01006 1.22888 1.04802 0.93912 0.99384 1.23257 0.93333 1.02543 1.02892 1.74622 1.02944 1.20235 1.16169 0.90721 0.89409 0.90640 0.90211 0.89294 0.91529 0.91344 0.89357 0.90153 0.85867 0.85593 0.75910 0.95640 0.94726 0.77994 0.93555 0.87856 0.88895 0.89260 0.89856 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.91 37.16 0.29 -0.74 16 2 C 0.18 1.64 1.30 -131.82 -0.17 1.46 16 3 C -0.16 -1.16 8.66 37.16 0.32 -0.83 16 4 C -0.16 -1.38 8.67 37.16 0.32 -1.06 16 5 N -0.13 -1.77 3.73 0.48 0.00 -1.76 16 6 N -0.07 -1.01 12.24 60.35 0.74 -0.28 16 7 N -0.28 -4.53 12.50 32.45 0.41 -4.12 16 8 C 0.19 2.97 6.86 -156.63 -1.07 1.90 16 9 C -0.05 -0.63 6.33 -29.03 -0.18 -0.81 16 10 C 0.53 8.52 7.16 -10.98 -0.08 8.45 16 11 O -0.54 -10.47 13.06 5.55 0.07 -10.40 16 12 N -0.70 -10.95 4.50 -53.80 -0.24 -11.19 16 13 C 0.17 2.87 2.43 -67.93 -0.17 2.71 16 14 H 0.09 1.69 7.34 -51.93 -0.38 1.31 16 15 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 16 N -0.73 -17.78 5.43 -59.91 -0.33 -18.10 16 17 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C -0.16 -2.35 5.36 -90.62 -0.49 -2.83 16 26 C -0.17 -2.38 10.18 -26.69 -0.27 -2.65 16 27 C -0.18 -2.67 9.74 -26.69 -0.26 -2.93 16 28 N -0.29 -4.48 11.83 32.47 0.38 -4.10 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.12 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.41 5.78 8.60 -40.82 -0.35 5.43 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.39 10.00 7.33 -40.82 -0.30 9.71 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 46 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.12 2.01 5.02 -51.93 -0.26 1.75 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -34.47 405.82 -7.19 -41.66 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -8.02 Total: 13.62 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.02 Total: -1.64 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: 1.69 Total: -66.34 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.47 -7.19 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733171573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.587 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds