Wall clock time and date at job start Tue Mar 31 2020 20:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.53007 * 109.46797 * 240.00139 * 2 1 3 5 5 N 1.46498 * 109.46832 * 120.00253 * 2 1 3 6 6 N 1.28781 * 125.45304 * 359.97438 * 5 2 1 7 7 N 1.28998 * 108.72936 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35114 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54975 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47148 * 90.02309 * 9 8 7 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.28037 * 10 9 8 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 9 14 14 H 1.09007 * 109.47747 * 35.00142 * 13 12 10 15 15 C 1.53006 * 109.47036 * 154.99621 * 13 12 10 16 16 N 1.46503 * 109.47121 * 305.00021 * 15 13 12 17 17 C 1.36931 * 119.99753 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00733 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99940 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00059 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.46857 * 119.99970 * 21 19 17 24 24 H 1.48496 * 109.46848 * 239.99675 * 21 19 17 25 25 C 1.53001 * 109.47313 * 274.99614 * 13 12 10 26 26 C 1.52999 * 117.49728 * 128.74937 * 25 13 12 27 27 C 1.53004 * 117.49736 * 60.08890 * 25 13 12 28 28 N 1.28886 * 125.44755 * 180.30405 * 5 2 1 29 29 H 1.08994 * 109.47100 * 300.00245 * 1 2 3 30 30 H 1.09006 * 109.47084 * 59.99742 * 1 2 3 31 31 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46646 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47650 * 299.99722 * 3 2 1 34 34 H 1.09001 * 109.46970 * 60.00699 * 3 2 1 35 35 H 1.08990 * 109.47122 * 300.00180 * 4 2 1 36 36 H 1.09001 * 109.46954 * 60.00587 * 4 2 1 37 37 H 1.09000 * 109.46839 * 179.97438 * 4 2 1 38 38 H 1.09009 * 109.46601 * 330.02331 * 9 8 7 39 39 H 1.08998 * 109.47035 * 210.02838 * 9 8 7 40 40 H 0.97000 * 119.99894 * 359.71837 * 12 10 9 41 41 H 1.08997 * 109.46872 * 65.00091 * 15 13 12 42 42 H 1.08994 * 109.47319 * 185.00068 * 15 13 12 43 43 H 0.97001 * 119.99637 * 359.97438 * 16 15 13 44 44 H 0.96990 * 120.00209 * 180.02562 * 20 19 17 45 45 H 1.08999 * 115.54475 * 274.42103 * 25 13 12 46 46 H 1.08998 * 117.50367 * 0.02562 * 26 25 13 47 47 H 1.09005 * 117.49367 * 145.02665 * 26 25 13 48 48 H 1.08997 * 117.49369 * 214.98090 * 27 25 13 49 49 H 1.08998 * 117.49759 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2782 -1.2172 2.1090 7 7 2.0399 -1.7375 3.0108 8 6 3.3016 -1.5229 2.6376 9 6 4.5420 -1.9513 3.3786 10 6 4.9550 -3.3245 2.9150 11 8 4.3062 -3.8985 2.0661 12 7 6.0422 -3.9168 3.4475 13 6 6.4402 -5.2541 3.0012 14 1 6.2234 -5.3621 1.9384 15 6 7.9397 -5.4455 3.2377 16 7 8.6796 -4.3658 2.5796 17 6 10.0463 -4.3273 2.6553 18 1 10.5788 -5.0926 3.2005 19 6 10.7474 -3.3040 2.0322 20 7 10.0985 -2.3710 1.3682 21 14 12.6118 -3.2518 2.1348 22 1 13.0962 -4.4069 2.9326 23 1 13.1850 -3.3195 0.7665 24 1 13.0364 -1.9873 2.7873 25 6 5.6608 -6.3081 3.7903 26 6 4.9346 -7.3934 2.9930 27 6 4.1347 -6.2855 3.6830 28 7 3.2573 -0.8633 1.5062 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 4.3356 -1.9758 4.4487 39 1 5.3466 -1.2434 3.1799 40 1 6.5613 -3.4575 4.1262 41 1 8.1440 -5.4261 4.3082 42 1 8.2531 -6.4046 2.8254 43 1 8.2013 -3.6783 2.0903 44 1 10.5883 -1.6562 0.9326 45 1 6.0938 -6.5927 4.7492 46 1 5.0123 -7.3569 1.9064 47 1 4.8893 -8.3920 3.4278 48 1 3.5638 -6.5556 4.5713 49 1 3.6860 -5.5194 3.0506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733171573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:21 Heat of formation + Delta-G solvation = 98.873213 kcal Electronic energy + Delta-G solvation = -29633.242282 eV Core-core repulsion = 25633.775947 eV Total energy + Delta-G solvation = -3999.466335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.37490 -41.09999 -38.74468 -38.34624 -36.60591 -34.98781 -34.61431 -34.15302 -32.99350 -30.87236 -29.28577 -28.54171 -28.36640 -25.92639 -25.58942 -23.98488 -23.22687 -23.03572 -21.85029 -21.48388 -21.27096 -19.26421 -18.55578 -18.05212 -17.74088 -17.34858 -16.79910 -16.63604 -15.96278 -15.72155 -15.36676 -15.28565 -15.15056 -15.04784 -14.80201 -14.62917 -14.42519 -14.04802 -13.73613 -13.45413 -13.23009 -13.19708 -13.17073 -12.89635 -12.86780 -12.81158 -12.69324 -12.56391 -12.45096 -12.26730 -12.16203 -12.02028 -11.92835 -11.84758 -11.82931 -11.35832 -11.21160 -11.08212 -10.97268 -10.69778 -9.94723 -8.98939 -7.91975 -5.21377 0.23256 0.93589 1.06265 1.49996 1.50804 1.60414 1.62058 2.17944 2.57664 2.81312 3.03828 3.15626 3.42436 3.51150 3.57727 3.60427 3.67332 3.81873 3.98372 4.12989 4.17033 4.21732 4.36944 4.39052 4.45345 4.47479 4.50867 4.53904 4.58943 4.65079 4.68304 4.70956 4.71821 4.79898 4.81678 4.93329 5.01007 5.05306 5.09648 5.13771 5.21916 5.29186 5.36205 5.37944 5.53225 5.59357 6.28595 6.58730 7.26440 7.34822 7.36314 8.08904 8.33386 9.31030 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003092 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.396028 B = 9052.689134 C =11034.802157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.162 3.838 3 C -0.153 4.153 4 C -0.156 4.156 5 N -0.120 5.120 6 N -0.076 5.076 7 N -0.302 5.302 8 C 0.179 3.821 9 C -0.042 4.042 10 C 0.525 3.475 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.181 3.819 14 H 0.054 0.946 15 C 0.151 3.849 16 N -0.742 5.742 17 C -0.241 4.241 18 H 0.079 0.921 19 C -0.073 4.073 20 N -0.966 5.966 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.299 1.299 24 H -0.293 1.293 25 C -0.159 4.159 26 C -0.167 4.167 27 C -0.182 4.182 28 N -0.310 5.310 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.414 0.586 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.125 0.875 46 H 0.077 0.923 47 H 0.116 0.884 48 H 0.103 0.897 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.544 4.627 1.088 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.083 3.917 3 C -0.211 4.211 4 C -0.214 4.214 5 N -0.036 5.036 6 N -0.068 5.068 7 N -0.172 5.172 8 C -0.104 4.104 9 C -0.085 4.085 10 C 0.311 3.689 11 O -0.455 6.455 12 N -0.348 5.348 13 C 0.076 3.924 14 H 0.072 0.928 15 C 0.024 3.976 16 N -0.385 5.385 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.801 3.199 22 H -0.190 1.190 23 H -0.226 1.226 24 H -0.220 1.220 25 C -0.179 4.179 26 C -0.204 4.204 27 C -0.219 4.219 28 N -0.161 5.161 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.174 0.826 39 H 0.156 0.844 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.207 0.793 44 H 0.058 0.942 45 H 0.143 0.857 46 H 0.096 0.904 47 H 0.134 0.866 48 H 0.121 0.879 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.488 4.237 0.409 20.925 hybrid contribution 1.798 0.345 -0.031 1.831 sum -18.689 4.582 0.379 19.247 Atomic orbital electron populations 1.22122 0.88245 1.04272 1.05774 1.21988 0.97871 0.93385 0.78493 1.22247 1.02388 0.90942 1.05518 1.22258 1.02148 1.00734 0.96298 1.50923 1.00539 1.33822 1.18316 1.78747 1.22217 1.09801 0.96016 1.75719 1.01177 1.19153 1.21169 1.24964 0.95177 0.98357 0.91916 1.19990 0.91727 0.94647 1.02095 1.20426 0.80207 0.87301 0.81009 1.90626 1.54700 1.66420 1.33783 1.45770 1.28045 1.18098 1.42934 1.20523 0.93304 0.81373 0.97200 0.92794 1.21033 0.88244 0.91576 0.96718 1.42516 1.03351 1.29286 1.63389 1.19646 0.84124 1.07174 1.26333 0.90328 1.25521 1.02077 0.97869 1.01043 1.69827 1.35587 1.15867 1.40414 0.85110 0.80689 0.77439 0.76708 1.18991 1.22637 1.21987 1.22576 0.94124 0.99599 1.01557 1.22970 1.03806 0.94992 0.98677 1.23154 0.93286 1.02217 1.03283 1.74591 1.04158 1.20903 1.16430 0.90960 0.85641 0.91897 0.92038 0.85634 0.91657 0.92971 0.85401 0.92507 0.82598 0.84424 0.74975 0.93708 0.94746 0.79315 0.94154 0.85679 0.90418 0.86562 0.87868 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.91 71.98 0.57 -1.20 16 2 C 0.16 2.83 1.30 3.61 0.00 2.84 16 3 C -0.15 -2.03 8.66 71.98 0.62 -1.40 16 4 C -0.16 -2.63 8.67 71.98 0.62 -2.00 16 5 N -0.12 -3.29 3.73 -152.39 -0.57 -3.86 16 6 N -0.08 -2.31 12.24 37.02 0.45 -1.85 16 7 N -0.30 -10.00 12.50 -51.26 -0.64 -10.64 16 8 C 0.18 5.70 6.86 138.55 0.95 6.65 16 9 C -0.04 -1.12 6.33 29.10 0.18 -0.94 16 10 C 0.52 17.29 7.16 87.66 0.63 17.92 16 11 O -0.57 -23.27 13.06 -3.04 -0.04 -23.31 16 12 N -0.70 -21.66 4.50 -442.52 -1.99 -23.65 16 13 C 0.18 6.08 2.43 44.99 0.11 6.19 16 14 H 0.05 2.18 7.34 -2.38 -0.02 2.16 16 15 C 0.15 5.68 5.80 86.38 0.50 6.18 16 16 N -0.74 -36.04 5.43 -343.44 -1.87 -37.90 16 17 C -0.24 -12.94 9.99 84.04 0.84 -12.10 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 20 N -0.97 -57.96 13.06 21.65 0.28 -57.67 16 21 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 C -0.16 -4.37 5.36 -10.79 -0.06 -4.43 16 26 C -0.17 -4.40 10.18 30.62 0.31 -4.09 16 27 C -0.18 -5.14 9.74 30.62 0.30 -4.84 16 28 N -0.31 -9.88 11.83 -51.20 -0.61 -10.49 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.16 3.01 8.14 -2.38 -0.02 2.99 16 39 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.41 11.49 8.60 -92.71 -0.80 10.69 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.37 19.77 7.33 -92.71 -0.68 19.09 16 44 H 0.25 14.58 8.31 -92.72 -0.77 13.81 16 45 H 0.13 2.95 8.11 -2.39 -0.02 2.93 16 46 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 47 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 48 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.09 3.09 5.02 -2.39 -0.01 3.08 16 Total: -1.00 -76.41 405.82 2.59 -73.82 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.51 Total: 43.18 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.05 Total: 5.18 kcal Atomic # 7 Polarization: -141.13 SS G_CDS: -4.94 Total: -146.07 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.41 2.59 -73.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733171573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.691 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds