Wall clock time and date at job start Tue Mar 31 2020 19:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99806 * 2 1 4 4 C 1.53003 * 109.47047 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46601 * 65.00137 * 4 3 2 6 6 C 1.36935 * 120.00491 * 269.99869 * 5 4 3 7 7 H 1.07994 * 120.00308 * 141.80418 * 6 5 4 8 8 C 1.38816 * 119.99902 * 321.80243 * 6 5 4 9 9 N 1.31626 * 119.99653 * 339.27959 * 8 6 5 10 10 Si 1.86795 * 120.00249 * 159.27598 * 8 6 5 11 11 H 1.48500 * 109.47173 * 90.00238 * 10 8 6 12 12 H 1.48497 * 109.47280 * 210.00128 * 10 8 6 13 13 H 1.48501 * 109.47090 * 330.00478 * 10 8 6 14 14 C 1.46508 * 119.99816 * 89.99962 * 5 4 3 15 15 C 1.53040 * 109.45832 * 124.70229 * 14 5 4 16 16 C 1.53187 * 109.31284 * 181.38611 * 15 14 5 17 17 N 1.46926 * 108.77586 * 305.36546 * 16 15 14 18 18 C 1.34775 * 120.63080 * 233.58369 * 17 16 15 19 19 O 1.21279 * 120.00545 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99843 * 179.72458 * 18 17 16 21 21 C 1.50704 * 109.46989 * 180.02562 * 20 18 17 22 22 C 1.39869 * 125.90025 * 124.71449 * 21 20 18 23 23 C 1.35316 * 107.92033 * 179.86159 * 22 21 20 24 24 N 1.34945 * 107.74763 * 0.39540 * 23 22 21 25 25 H 0.96990 * 126.04083 * 179.74968 * 24 23 22 26 26 N 1.30838 * 125.89930 * 305.02180 * 21 20 18 27 27 C 1.46924 * 118.73901 * 53.86239 * 17 16 15 28 28 C 1.53038 * 109.46153 * 244.77029 * 14 5 4 29 29 H 1.09004 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47194 * 299.99555 * 1 2 3 31 31 H 1.08999 * 109.47009 * 60.00403 * 1 2 3 32 32 H 1.09003 * 109.46811 * 60.00163 * 3 2 1 33 33 H 1.08995 * 109.47268 * 300.00291 * 3 2 1 34 34 H 1.09001 * 109.47399 * 305.00528 * 4 3 2 35 35 H 1.08997 * 109.46836 * 185.00111 * 4 3 2 36 36 H 0.96997 * 119.99676 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.45976 * 4.73080 * 14 5 4 38 38 H 1.09001 * 109.49693 * 61.43403 * 15 14 5 39 39 H 1.08999 * 109.52779 * 301.35734 * 15 14 5 40 40 H 1.09003 * 109.59224 * 185.57767 * 16 15 14 41 41 H 1.09003 * 109.70571 * 65.22523 * 16 15 14 42 42 H 1.08999 * 109.46936 * 300.00107 * 20 18 17 43 43 H 1.08998 * 109.47291 * 60.00534 * 20 18 17 44 44 H 1.08002 * 126.03890 * 359.97438 * 22 21 20 45 45 H 1.08001 * 126.12601 * 180.14921 * 23 22 21 46 46 H 1.08993 * 109.59107 * 65.92290 * 27 17 16 47 47 H 1.08997 * 109.58862 * 186.35605 * 27 17 16 48 48 H 1.08996 * 109.49893 * 298.56772 * 28 14 5 49 49 H 1.08998 * 109.49467 * 58.62807 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3346 7 1 3.8136 -1.3101 -2.2416 8 6 4.5858 -1.5185 -0.2535 9 7 5.3001 -0.9140 0.6722 10 14 4.2290 -3.3466 -0.1125 11 1 5.3032 -4.1145 -0.7919 12 1 4.1760 -3.7315 1.3207 13 1 2.9240 -3.6472 -0.7544 14 6 4.2881 1.4000 -2.4130 15 6 5.7094 1.0967 -2.8929 16 6 6.0441 1.9969 -4.0863 17 7 5.0097 1.8224 -5.1151 18 6 5.3467 1.5045 -6.3807 19 8 6.5131 1.3594 -6.6795 20 6 4.2737 1.3228 -7.4232 21 6 4.9103 0.9736 -8.7437 22 6 4.6192 -0.1510 -9.5227 23 6 5.3958 -0.1031 -10.6298 24 7 6.1578 1.0077 -10.5499 25 1 6.8133 1.2982 -11.2031 26 7 5.8349 1.6672 -9.3570 27 6 3.6014 2.0071 -4.7393 28 6 3.2937 1.1012 -3.5373 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 5.6414 -1.4180 1.4274 37 1 4.2156 2.4512 -2.1341 38 1 5.7759 0.0517 -3.1955 39 1 6.4152 1.2869 -2.0844 40 1 7.0156 1.7173 -4.4939 41 1 6.0685 3.0384 -3.7656 42 1 3.6041 0.5183 -7.1190 43 1 3.7068 2.2481 -7.5262 44 1 3.9002 -0.9207 -9.2836 45 1 5.4068 -0.8266 -11.4316 46 1 3.4288 3.0487 -4.4689 47 1 2.9607 1.7340 -5.5778 48 1 3.3830 0.0562 -3.8339 49 1 2.2798 1.2946 -3.1870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733279597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:03 Heat of formation + Delta-G solvation = 24.097383 kcal Electronic energy + Delta-G solvation = -30105.869544 eV Core-core repulsion = 26070.867934 eV Total energy + Delta-G solvation = -4035.001610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.24719 -39.70832 -37.58386 -36.77205 -34.85652 -33.11477 -31.92308 -30.81587 -30.41450 -29.99552 -28.66806 -27.81013 -25.65413 -24.72148 -23.20876 -22.72003 -21.69544 -20.93268 -20.26170 -19.51874 -18.47514 -18.19211 -17.01737 -16.20176 -15.73065 -15.54275 -15.25122 -15.01526 -14.74761 -14.50656 -14.09934 -13.99760 -13.83915 -13.60849 -13.54893 -13.36148 -13.19464 -12.84486 -12.75378 -12.23942 -11.97369 -11.89865 -11.71702 -11.48726 -11.28700 -10.87931 -10.75345 -10.70219 -10.66247 -10.56798 -10.41440 -10.04139 -9.84119 -9.75289 -9.62837 -9.41369 -9.30866 -8.80938 -8.78833 -8.32403 -8.25399 -6.45210 -5.65684 -3.21732 1.85040 2.64120 2.80999 2.93331 3.37296 3.46970 3.53916 3.59358 4.49909 4.59169 4.64030 4.70150 4.87417 5.09940 5.19701 5.25260 5.33519 5.50609 5.56804 5.59182 5.61414 5.66580 5.74746 5.76326 5.79441 5.87747 5.95156 6.03360 6.05804 6.13101 6.15447 6.22703 6.33826 6.44098 6.50709 6.55072 6.65820 6.71412 6.79908 6.90596 7.19312 7.19986 7.29799 7.63856 7.68902 7.72537 7.95758 8.09437 8.48116 8.66203 9.30499 9.94421 10.49794 11.36193 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.002916 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.272767 B = 9601.277215 C = 9960.658553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.144 3.856 5 N -0.572 5.572 6 C -0.233 4.233 7 H 0.054 0.946 8 C 0.019 3.981 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.177 3.823 15 C -0.130 4.130 16 C 0.113 3.887 17 N -0.606 5.606 18 C 0.517 3.483 19 O -0.534 6.534 20 C -0.061 4.061 21 C 0.089 3.911 22 C -0.265 4.265 23 C 0.051 3.949 24 N -0.480 5.480 25 H 0.437 0.563 26 N -0.263 5.263 27 C 0.107 3.893 28 C -0.141 4.141 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.251 0.749 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.148 0.852 45 H 0.175 0.825 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 6.376 -15.596 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.290 5.290 6 C -0.362 4.362 7 H 0.072 0.928 8 C -0.180 4.180 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.219 1.219 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.069 3.931 15 C -0.170 4.170 16 C -0.009 4.009 17 N -0.340 5.340 18 C 0.303 3.697 19 O -0.410 6.410 20 C -0.102 4.102 21 C -0.079 4.079 22 C -0.295 4.295 23 C -0.096 4.096 24 N -0.188 5.188 25 H 0.280 0.720 26 N -0.086 5.086 27 C -0.016 4.016 28 C -0.182 4.182 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.166 0.834 45 H 0.192 0.808 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.746 7.078 -15.537 17.720 hybrid contribution -0.816 -1.455 -0.175 1.677 sum -5.562 5.623 -15.712 17.590 Atomic orbital electron populations 1.22626 0.84396 1.01409 0.98320 1.88231 1.16393 1.27678 1.94791 1.23457 0.99017 0.84061 0.96661 1.21030 0.87353 0.96548 0.93362 1.43727 1.75214 1.02697 1.07398 1.18670 1.35643 0.81545 1.00387 0.92808 1.25021 0.96494 0.97356 0.99148 1.69955 1.34729 1.35544 1.13404 0.86453 0.78188 0.86202 0.76759 1.21852 1.21830 1.20406 1.20328 0.91286 0.93394 0.88073 1.22234 0.99135 1.00078 0.95512 1.21721 0.91540 0.99337 0.88313 1.48118 1.07997 1.69226 1.08650 1.20243 0.89875 0.76841 0.82719 1.90707 1.19854 1.50459 1.80003 1.20093 0.97269 1.04559 0.88302 1.21616 0.95662 0.94435 0.96142 1.21420 1.08541 1.02453 0.97037 1.22526 0.94524 0.91997 1.00542 1.46374 1.33972 1.19502 1.18977 0.71969 1.77398 1.16436 1.20440 0.94359 1.21934 0.81003 1.00036 0.98631 1.22487 1.00509 0.99921 0.95243 0.90815 0.95621 0.95358 0.95969 0.95530 0.88010 0.94324 0.93883 0.93644 0.91056 0.90962 0.89873 0.92381 0.86875 0.87483 0.83430 0.80831 0.91770 0.90572 0.91247 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.50 10.18 -35.23 -0.36 -7.86 16 3 C 0.05 0.91 6.28 37.16 0.23 1.14 16 4 C 0.14 3.18 5.70 -4.04 -0.02 3.16 16 5 N -0.57 -13.06 2.34 -165.61 -0.39 -13.45 16 6 C -0.23 -6.04 7.60 -15.06 -0.11 -6.16 16 7 H 0.05 1.44 7.09 -52.49 -0.37 1.07 16 8 C 0.02 0.52 4.97 -17.43 -0.09 0.43 16 9 N -0.89 -25.26 11.47 55.49 0.64 -24.62 16 10 Si 0.89 22.14 29.60 -169.99 -5.03 17.10 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.18 3.34 2.59 -67.89 -0.18 3.16 16 15 C -0.13 -2.50 5.23 -26.61 -0.14 -2.64 16 16 C 0.11 1.87 6.43 -3.71 -0.02 1.84 16 17 N -0.61 -9.17 2.97 -172.51 -0.51 -9.68 16 18 C 0.52 8.25 7.69 -10.98 -0.08 8.17 16 19 O -0.53 -10.69 14.98 5.56 0.08 -10.61 16 20 C -0.06 -0.73 4.62 -29.03 -0.13 -0.86 16 21 C 0.09 1.21 6.01 -82.40 -0.50 0.72 16 22 C -0.26 -2.95 10.72 -40.01 -0.43 -3.38 16 23 C 0.05 0.47 11.99 -17.22 -0.21 0.26 16 24 N -0.48 -5.08 7.36 30.45 0.22 -4.85 16 25 H 0.44 3.10 8.96 -182.62 -1.64 1.46 16 26 N -0.26 -3.88 12.05 33.67 0.41 -3.47 16 27 C 0.11 1.36 6.37 -3.49 -0.02 1.33 16 28 C -0.14 -2.28 5.39 -26.39 -0.14 -2.42 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.10 2.65 5.54 -51.93 -0.29 2.36 16 35 H 0.04 0.79 7.88 -51.93 -0.41 0.38 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.05 0.81 7.77 -51.93 -0.40 0.40 16 38 H 0.07 1.58 7.62 -51.93 -0.40 1.18 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.49 7.01 -51.93 -0.36 1.12 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 1.11 7.69 -51.93 -0.40 0.71 16 43 H 0.11 1.03 7.92 -51.93 -0.41 0.62 16 44 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 48 H 0.07 1.28 7.24 -51.93 -0.38 0.90 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -34.81 393.23 -8.89 -43.71 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -9.15 Total: 1.45 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.73 Total: 6.36 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.37 Total: -56.07 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.28 Total: -18.47 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.81 -8.89 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733279597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.806 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds