Wall clock time and date at job start Tue Mar 31 2020 19:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99806 * 2 1 4 4 C 1.53003 * 109.47047 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46601 * 65.00137 * 4 3 2 6 6 C 1.36935 * 120.00491 * 269.99869 * 5 4 3 7 7 H 1.07994 * 120.00308 * 141.80418 * 6 5 4 8 8 C 1.38816 * 119.99902 * 321.80243 * 6 5 4 9 9 N 1.31626 * 119.99653 * 339.27959 * 8 6 5 10 10 Si 1.86795 * 120.00249 * 159.27598 * 8 6 5 11 11 H 1.48500 * 109.47173 * 90.00238 * 10 8 6 12 12 H 1.48497 * 109.47280 * 210.00128 * 10 8 6 13 13 H 1.48501 * 109.47090 * 330.00478 * 10 8 6 14 14 C 1.46508 * 119.99816 * 89.99962 * 5 4 3 15 15 C 1.53040 * 109.45832 * 124.70229 * 14 5 4 16 16 C 1.53187 * 109.31284 * 181.38611 * 15 14 5 17 17 N 1.46926 * 108.77586 * 305.36546 * 16 15 14 18 18 C 1.34775 * 120.63080 * 233.58369 * 17 16 15 19 19 O 1.21279 * 120.00545 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99843 * 179.72458 * 18 17 16 21 21 C 1.50704 * 109.46989 * 180.02562 * 20 18 17 22 22 C 1.39869 * 125.90025 * 124.71449 * 21 20 18 23 23 C 1.35316 * 107.92033 * 179.86159 * 22 21 20 24 24 N 1.34945 * 107.74763 * 0.39540 * 23 22 21 25 25 H 0.96990 * 126.04083 * 179.74968 * 24 23 22 26 26 N 1.30838 * 125.89930 * 305.02180 * 21 20 18 27 27 C 1.46924 * 118.73901 * 53.86239 * 17 16 15 28 28 C 1.53038 * 109.46153 * 244.77029 * 14 5 4 29 29 H 1.09004 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47194 * 299.99555 * 1 2 3 31 31 H 1.08999 * 109.47009 * 60.00403 * 1 2 3 32 32 H 1.09003 * 109.46811 * 60.00163 * 3 2 1 33 33 H 1.08995 * 109.47268 * 300.00291 * 3 2 1 34 34 H 1.09001 * 109.47399 * 305.00528 * 4 3 2 35 35 H 1.08997 * 109.46836 * 185.00111 * 4 3 2 36 36 H 0.96997 * 119.99676 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.45976 * 4.73080 * 14 5 4 38 38 H 1.09001 * 109.49693 * 61.43403 * 15 14 5 39 39 H 1.08999 * 109.52779 * 301.35734 * 15 14 5 40 40 H 1.09003 * 109.59224 * 185.57767 * 16 15 14 41 41 H 1.09003 * 109.70571 * 65.22523 * 16 15 14 42 42 H 1.08999 * 109.46936 * 300.00107 * 20 18 17 43 43 H 1.08998 * 109.47291 * 60.00534 * 20 18 17 44 44 H 1.08002 * 126.03890 * 359.97438 * 22 21 20 45 45 H 1.08001 * 126.12601 * 180.14921 * 23 22 21 46 46 H 1.08993 * 109.59107 * 65.92290 * 27 17 16 47 47 H 1.08997 * 109.58862 * 186.35605 * 27 17 16 48 48 H 1.08996 * 109.49893 * 298.56772 * 28 14 5 49 49 H 1.08998 * 109.49467 * 58.62807 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3346 7 1 3.8136 -1.3101 -2.2416 8 6 4.5858 -1.5185 -0.2535 9 7 5.3001 -0.9140 0.6722 10 14 4.2290 -3.3466 -0.1125 11 1 5.3032 -4.1145 -0.7919 12 1 4.1760 -3.7315 1.3207 13 1 2.9240 -3.6472 -0.7544 14 6 4.2881 1.4000 -2.4130 15 6 5.7094 1.0967 -2.8929 16 6 6.0441 1.9969 -4.0863 17 7 5.0097 1.8224 -5.1151 18 6 5.3467 1.5045 -6.3807 19 8 6.5131 1.3594 -6.6795 20 6 4.2737 1.3228 -7.4232 21 6 4.9103 0.9736 -8.7437 22 6 4.6192 -0.1510 -9.5227 23 6 5.3958 -0.1031 -10.6298 24 7 6.1578 1.0077 -10.5499 25 1 6.8133 1.2982 -11.2031 26 7 5.8349 1.6672 -9.3570 27 6 3.6014 2.0071 -4.7393 28 6 3.2937 1.1012 -3.5373 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 5.6414 -1.4180 1.4274 37 1 4.2156 2.4512 -2.1341 38 1 5.7759 0.0517 -3.1955 39 1 6.4152 1.2869 -2.0844 40 1 7.0156 1.7173 -4.4939 41 1 6.0685 3.0384 -3.7656 42 1 3.6041 0.5183 -7.1190 43 1 3.7068 2.2481 -7.5262 44 1 3.9002 -0.9207 -9.2836 45 1 5.4068 -0.8266 -11.4316 46 1 3.4288 3.0487 -4.4689 47 1 2.9607 1.7340 -5.5778 48 1 3.3830 0.0562 -3.8339 49 1 2.2798 1.2946 -3.1870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733279597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:02 Heat of formation + Delta-G solvation = -0.099651 kcal Electronic energy + Delta-G solvation = -30106.918806 eV Core-core repulsion = 26070.867934 eV Total energy + Delta-G solvation = -4036.050872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08624 -40.94559 -39.10207 -38.20314 -36.45129 -34.14134 -33.58769 -32.33103 -31.81930 -30.79394 -29.94773 -29.16421 -27.09748 -26.31805 -24.71955 -24.04388 -22.67789 -22.24605 -21.67454 -20.79333 -19.66237 -18.97277 -18.37281 -17.85759 -17.21962 -16.79195 -16.58834 -16.48118 -16.38261 -15.64416 -15.48052 -15.37786 -15.17069 -15.08412 -14.68250 -14.50008 -14.34767 -13.97732 -13.90593 -13.48773 -13.34127 -13.27057 -13.08692 -12.93857 -12.79843 -12.69526 -12.48919 -12.29241 -12.18674 -12.01366 -11.76411 -11.53942 -11.50941 -11.41281 -11.04197 -10.79430 -10.36400 -10.28152 -10.23936 -9.58582 -9.52546 -8.37569 -7.67197 -5.25471 1.05931 1.45908 1.49496 1.57917 1.70081 1.80134 2.09840 2.26929 2.61019 3.28304 3.43955 3.58895 3.67546 3.77228 4.03957 4.13389 4.24698 4.32562 4.38012 4.44434 4.49301 4.52792 4.54682 4.60099 4.69355 4.71108 4.77629 4.81689 4.88009 4.89299 4.90514 4.92982 4.96575 4.99021 5.06872 5.13818 5.19863 5.30227 5.54672 5.68414 5.71833 5.76039 5.81077 5.92010 6.54225 6.55192 6.57362 6.75559 6.81538 7.27941 7.34847 8.04533 8.53350 9.28886 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.002916 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.272767 B = 9601.277215 C = 9960.658553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.057 3.943 4 C 0.140 3.860 5 N -0.584 5.584 6 C -0.214 4.214 7 H 0.043 0.957 8 C -0.030 4.030 9 N -0.921 5.921 10 Si 0.937 3.063 11 H -0.294 1.294 12 H -0.298 1.298 13 H -0.276 1.276 14 C 0.172 3.828 15 C -0.117 4.117 16 C 0.124 3.876 17 N -0.607 5.607 18 C 0.511 3.489 19 O -0.583 6.583 20 C -0.054 4.054 21 C 0.069 3.931 22 C -0.290 4.290 23 C 0.067 3.933 24 N -0.478 5.478 25 H 0.448 0.552 26 N -0.317 5.317 27 C 0.112 3.888 28 C -0.129 4.129 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.244 0.756 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.166 0.834 45 H 0.219 0.781 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.041 0.959 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 7.424 -17.783 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.345 4.345 7 H 0.060 0.940 8 C -0.226 4.226 9 N -0.567 5.567 10 Si 0.767 3.233 11 H -0.222 1.222 12 H -0.224 1.224 13 H -0.201 1.201 14 C 0.066 3.934 15 C -0.157 4.157 16 C 0.001 3.999 17 N -0.339 5.339 18 C 0.300 3.700 19 O -0.463 6.463 20 C -0.095 4.095 21 C -0.098 4.098 22 C -0.319 4.319 23 C -0.081 4.081 24 N -0.188 5.188 25 H 0.294 0.706 26 N -0.141 5.141 27 C -0.010 4.010 28 C -0.169 4.169 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.184 0.816 45 H 0.236 0.764 46 H 0.110 0.890 47 H 0.132 0.868 48 H 0.060 0.940 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.465 8.150 -17.742 20.902 hybrid contribution 0.015 -1.769 0.440 1.823 sum -7.450 6.381 -17.301 19.889 Atomic orbital electron populations 1.22800 0.81728 1.02395 1.00080 1.88153 1.19439 1.28853 1.95182 1.23234 0.96516 0.83895 0.98479 1.20962 0.89896 0.96142 0.91648 1.43904 1.75623 1.02101 1.08720 1.18688 1.33213 0.83311 0.99310 0.93980 1.25497 0.97573 0.99795 0.99766 1.70070 1.36591 1.36113 1.13916 0.85758 0.77842 0.83558 0.76101 1.22200 1.22443 1.20093 1.20556 0.91427 0.93766 0.87696 1.22044 0.99325 0.98393 0.95915 1.21464 0.91338 0.99675 0.87464 1.48217 1.08754 1.68776 1.08201 1.21004 0.90186 0.75520 0.83331 1.90684 1.22214 1.52495 1.80861 1.20196 0.96105 1.06840 0.86402 1.21989 0.95767 0.95273 0.96784 1.21796 1.09896 1.02548 0.97633 1.23247 0.92491 0.91496 1.00833 1.46438 1.34284 1.19742 1.18303 0.70586 1.77296 1.17984 1.22555 0.96299 1.22121 0.79783 1.00714 0.98370 1.22294 0.99953 0.99209 0.95490 0.90367 0.93796 0.93487 0.93952 0.93563 0.92051 0.93006 0.94723 0.91612 0.94881 0.93564 0.91947 0.89983 0.84440 0.84634 0.81647 0.76423 0.88982 0.86790 0.93968 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.32 10.18 -148.98 -1.52 -17.84 16 3 C 0.06 2.09 6.28 71.98 0.45 2.55 16 4 C 0.14 6.15 5.70 86.38 0.49 6.65 16 5 N -0.58 -26.70 2.34 -677.88 -1.59 -28.29 16 6 C -0.21 -11.34 7.60 84.03 0.64 -10.71 16 7 H 0.04 2.31 7.09 -2.91 -0.02 2.29 16 8 C -0.03 -1.70 4.97 84.86 0.42 -1.28 16 9 N -0.92 -54.09 11.47 21.65 0.25 -53.85 16 10 Si 0.94 46.67 29.60 68.60 2.03 48.70 16 11 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 14 C 0.17 6.32 2.59 45.02 0.12 6.43 16 15 C -0.12 -4.60 5.23 30.67 0.16 -4.44 16 16 C 0.12 4.05 6.43 86.36 0.56 4.61 16 17 N -0.61 -17.27 2.97 -818.08 -2.43 -19.69 16 18 C 0.51 15.72 7.69 87.66 0.67 16.40 16 19 O -0.58 -23.66 14.98 -3.02 -0.05 -23.71 16 20 C -0.05 -1.17 4.62 29.10 0.13 -1.03 16 21 C 0.07 1.76 6.01 43.10 0.26 2.02 16 22 C -0.29 -5.79 10.72 21.99 0.24 -5.56 16 23 C 0.07 1.04 11.99 83.54 1.00 2.04 16 24 N -0.48 -9.43 7.36 -57.59 -0.42 -9.85 16 25 H 0.45 5.81 8.96 -213.34 -1.91 3.90 16 26 N -0.32 -9.12 12.05 -47.38 -0.57 -9.69 16 27 C 0.11 2.39 6.37 86.51 0.55 2.94 16 28 C -0.13 -3.87 5.39 30.82 0.17 -3.70 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 3.27 5.54 -2.39 -0.01 3.26 16 35 H 0.05 2.07 7.88 -2.39 -0.02 2.06 16 36 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.07 2.17 7.77 -2.39 -0.02 2.15 16 38 H 0.03 1.52 7.62 -2.39 -0.02 1.50 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 2.31 7.01 -2.39 -0.02 2.29 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.14 2.22 7.69 -2.39 -0.02 2.20 16 43 H 0.14 2.08 7.92 -2.39 -0.02 2.07 16 44 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.11 1.65 5.93 -2.39 -0.01 1.63 16 48 H 0.04 1.50 7.24 -2.39 -0.02 1.48 16 49 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -80.95 393.23 1.86 -79.09 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.96 Total: 16.18 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 7.11 Total: 18.95 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.76 Total: -121.37 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.56 Total: -41.55 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -80.95 1.86 -79.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733279597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.990 kcal (2) G-P(sol) polarization free energy of solvation -80.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds