Wall clock time and date at job start Tue Mar 31 2020 19:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 C 1.53007 * 109.46837 * 240.00599 * 2 1 3 5 5 N 1.46493 * 109.47709 * 120.00599 * 2 1 3 6 6 N 1.28780 * 125.44717 * 359.97172 * 5 2 1 7 7 N 1.28995 * 108.73117 * 180.02562 * 6 5 2 8 8 C 1.33323 * 107.35290 * 0.02562 * 7 6 5 9 9 C 1.50693 * 126.55164 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47029 * 90.02608 * 9 8 7 11 11 O 1.21277 * 120.00033 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99863 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99841 * 179.97438 * 12 10 9 14 14 C 1.53001 * 110.91697 * 56.09677 * 13 12 10 15 15 C 1.55157 * 111.00466 * 179.97438 * 13 12 10 16 16 C 1.54325 * 102.94184 * 82.57497 * 15 13 12 17 17 N 1.47022 * 107.26948 * 22.19107 * 16 15 13 18 18 C 1.36945 * 125.64832 * 181.02381 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47423 * 108.70390 * 1.29074 * 17 16 15 27 27 N 1.28884 * 125.45415 * 180.31423 * 5 2 1 28 28 H 1.09007 * 109.47166 * 299.99173 * 1 2 3 29 29 H 1.08997 * 109.47612 * 59.99828 * 1 2 3 30 30 H 1.09004 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47457 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46851 * 300.00467 * 3 2 1 33 33 H 1.08998 * 109.46952 * 60.00210 * 3 2 1 34 34 H 1.08998 * 109.46797 * 299.99128 * 4 2 1 35 35 H 1.08997 * 109.47369 * 59.99423 * 4 2 1 36 36 H 1.09001 * 109.46854 * 179.97438 * 4 2 1 37 37 H 1.08994 * 109.47454 * 330.02372 * 9 8 7 38 38 H 1.09002 * 109.46890 * 210.02172 * 9 8 7 39 39 H 0.97003 * 120.00176 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47690 * 183.89832 * 14 13 12 41 41 H 1.08999 * 109.46882 * 303.90238 * 14 13 12 42 42 H 1.09005 * 109.47260 * 63.90076 * 14 13 12 43 43 H 1.09000 * 110.72140 * 324.21327 * 15 13 12 44 44 H 1.08998 * 110.72520 * 200.93646 * 15 13 12 45 45 H 1.09002 * 109.88274 * 262.77538 * 16 15 13 46 46 H 1.09000 * 110.01178 * 141.68100 * 16 15 13 47 47 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.37068 * 94.48354 * 26 17 16 49 49 H 1.09005 * 110.36651 * 216.80519 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0184 -0.6907 1.1960 6 7 1.2784 -1.2173 2.1089 7 7 2.0401 -1.7376 3.0106 8 6 3.3019 -1.5220 2.6379 9 6 4.5422 -1.9501 3.3790 10 6 4.9562 -3.3228 2.9147 11 8 4.3076 -3.8971 2.0660 12 7 6.0465 -3.9126 3.4435 13 6 6.4486 -5.2472 2.9925 14 6 6.6542 -5.2727 1.4766 15 6 7.7253 -5.7238 3.7345 16 6 7.1670 -6.2775 5.0624 17 7 5.7530 -6.6109 4.8361 18 6 4.8914 -7.1132 5.7745 19 1 3.8669 -7.3266 5.5076 20 6 5.3348 -7.3478 7.0687 21 7 6.5832 -7.0872 7.3942 22 14 4.1592 -8.0323 8.3490 23 1 4.8729 -8.1914 9.6415 24 1 3.0192 -7.0971 8.5244 25 1 3.6513 -9.3530 7.8988 26 6 5.4182 -6.3211 3.4299 27 7 3.2575 -0.8631 1.5061 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2496 37 1 4.3356 -1.9754 4.4489 38 1 5.3465 -1.2417 3.1809 39 1 6.5651 -3.4535 4.1226 40 1 6.8845 -6.2893 1.1581 41 1 5.7445 -4.9339 0.9809 42 1 7.4801 -4.6129 1.2108 43 1 8.3993 -4.8872 3.9186 44 1 8.2287 -6.5091 3.1706 45 1 7.2491 -5.5212 5.8431 46 1 7.7168 -7.1723 5.3539 47 1 6.8929 -7.2509 8.2987 48 1 5.5222 -7.2199 2.8221 49 1 4.4048 -5.9266 3.3548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733404448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:04 Heat of formation + Delta-G solvation = 116.199396 kcal Electronic energy + Delta-G solvation = -30099.549310 eV Core-core repulsion = 26100.834295 eV Total energy + Delta-G solvation = -3998.715015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.28357 -39.81977 -37.93393 -37.25688 -33.89238 -33.51015 -33.16929 -31.90002 -30.24878 -29.07404 -28.55653 -27.99020 -27.79149 -25.61437 -24.59948 -23.71822 -22.74753 -20.86298 -20.60067 -20.04632 -19.01863 -17.52189 -17.24055 -16.92075 -16.34499 -15.66778 -15.10763 -14.83915 -14.58752 -14.56252 -14.39005 -13.83516 -13.72787 -13.49893 -13.36384 -13.17788 -12.92402 -12.81732 -12.71957 -12.42341 -12.28987 -12.00464 -11.89675 -11.87502 -11.86526 -11.66759 -11.60215 -11.41264 -10.84658 -10.83735 -10.81384 -10.76283 -10.37364 -10.31147 -10.15955 -10.04634 -9.94565 -9.60480 -9.20200 -8.62314 -8.47924 -6.75006 -5.65593 -2.97324 1.31324 1.79985 2.23144 2.95164 3.46377 3.48382 3.50113 3.52242 3.77687 4.09147 4.11453 4.21581 4.54886 4.56550 4.92017 4.96162 4.98280 5.05064 5.13860 5.17360 5.22028 5.22479 5.26257 5.42021 5.47994 5.51014 5.53025 5.63777 5.66140 5.67610 5.77111 5.79275 5.94110 6.06093 6.17643 6.20039 6.26202 6.40277 6.43957 6.57833 6.73104 6.85315 7.16487 7.59488 7.60404 7.85052 7.91912 8.31542 8.47995 8.58359 9.29214 9.89042 10.54853 11.46419 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002845 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.157249 B = 9840.572759 C =10872.163050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 C -0.157 4.157 4 C -0.158 4.158 5 N -0.133 5.133 6 N -0.065 5.065 7 N -0.272 5.272 8 C 0.192 3.808 9 C -0.047 4.047 10 C 0.525 3.475 11 O -0.534 6.534 12 N -0.698 5.698 13 C 0.158 3.842 14 C -0.152 4.152 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.926 5.926 22 Si 0.910 3.090 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.133 3.867 27 N -0.298 5.298 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.400 0.600 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.251 0.749 48 H 0.024 0.976 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 18.742 -16.776 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.099 3.901 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.047 5.047 6 N -0.057 5.057 7 N -0.142 5.142 8 C -0.091 4.091 9 C -0.090 4.090 10 C 0.309 3.691 11 O -0.411 6.411 12 N -0.348 5.348 13 C 0.072 3.928 14 C -0.211 4.211 15 C -0.185 4.185 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.574 5.574 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.213 1.213 26 C 0.006 3.994 27 N -0.149 5.149 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.235 0.765 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.042 0.958 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.740 18.344 -17.294 25.652 hybrid contribution 0.221 -0.318 1.280 1.338 sum -4.519 18.026 -16.014 24.531 Atomic orbital electron populations 1.22081 0.90229 1.04703 1.04062 1.21319 0.96355 0.92568 0.79898 1.22217 1.03255 0.92241 1.03837 1.22225 1.03339 1.01240 0.94878 1.50373 1.01213 1.35083 1.18015 1.78902 1.22059 1.09231 0.95542 1.75863 1.00832 1.17576 1.19972 1.24596 0.94862 0.98074 0.91538 1.19897 0.91730 0.96231 1.01139 1.19917 0.80563 0.86615 0.81998 1.90662 1.52824 1.65229 1.32362 1.45689 1.28391 1.18313 1.42414 1.21500 0.96151 0.82012 0.93159 1.22030 1.02465 1.01687 0.94883 1.23227 0.95377 1.00282 0.99620 1.21159 0.84517 0.98684 0.90416 1.44437 1.07666 1.75770 1.05016 1.19023 0.92028 1.34584 0.89268 0.90663 1.24747 0.96564 1.01930 0.97266 1.69937 1.14301 1.54438 1.18735 0.86214 0.79874 0.78930 0.80895 1.21677 1.21151 1.21273 1.21907 0.96823 0.93642 0.86999 1.74501 1.03208 1.20853 1.16295 0.90647 0.89424 0.90531 0.90454 0.89340 0.91480 0.91253 0.89401 0.90430 0.85559 0.86332 0.76544 0.92011 0.90475 0.93246 0.91691 0.90932 0.93590 0.93862 0.93862 0.95793 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 7.91 37.16 0.29 -0.71 16 2 C 0.18 1.48 1.30 -131.82 -0.17 1.31 16 3 C -0.16 -0.95 8.66 37.16 0.32 -0.62 16 4 C -0.16 -1.16 8.67 37.16 0.32 -0.83 16 5 N -0.13 -1.73 3.73 0.48 0.00 -1.73 16 6 N -0.06 -1.01 12.24 60.35 0.74 -0.27 16 7 N -0.27 -4.76 12.50 32.45 0.41 -4.35 16 8 C 0.19 3.00 6.86 -156.62 -1.07 1.93 16 9 C -0.05 -0.62 6.33 -29.04 -0.18 -0.80 16 10 C 0.53 8.72 7.21 -10.98 -0.08 8.65 16 11 O -0.53 -10.78 12.87 5.56 0.07 -10.71 16 12 N -0.70 -11.17 5.19 -45.52 -0.24 -11.40 16 13 C 0.16 2.82 0.82 -129.55 -0.11 2.71 16 14 C -0.15 -2.40 8.59 37.16 0.32 -2.08 16 15 C -0.15 -2.58 5.97 -24.90 -0.15 -2.73 16 16 C 0.18 4.17 5.37 -3.06 -0.02 4.15 16 17 N -0.60 -15.60 3.39 -169.93 -0.58 -16.18 16 18 C -0.22 -6.34 10.28 -15.06 -0.15 -6.49 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.93 -27.14 10.31 55.49 0.57 -26.56 16 22 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.13 2.99 6.18 -2.41 -0.01 2.97 16 27 N -0.30 -4.26 11.83 32.47 0.38 -3.88 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.40 5.49 8.51 -40.82 -0.35 5.15 16 40 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.08 1.35 5.92 -51.93 -0.31 1.04 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 44 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 45 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 46 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.55 7.99 -51.93 -0.41 0.13 16 49 H 0.05 1.22 6.89 -51.93 -0.36 0.87 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -36.27 394.77 -6.58 -42.84 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.08 Total: 1.48 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.79 Total: 7.09 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 1.29 Total: -64.37 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.27 -6.58 -42.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733404448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.043 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds