Wall clock time and date at job start Tue Mar 31 2020 19:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 C 1.53007 * 109.46837 * 240.00599 * 2 1 3 5 5 N 1.46493 * 109.47709 * 120.00599 * 2 1 3 6 6 N 1.28780 * 125.44717 * 359.97172 * 5 2 1 7 7 N 1.28995 * 108.73117 * 180.02562 * 6 5 2 8 8 C 1.33323 * 107.35290 * 0.02562 * 7 6 5 9 9 C 1.50693 * 126.55164 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47029 * 90.02608 * 9 8 7 11 11 O 1.21277 * 120.00033 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99863 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99841 * 179.97438 * 12 10 9 14 14 C 1.53001 * 110.91697 * 56.09677 * 13 12 10 15 15 C 1.55157 * 111.00466 * 179.97438 * 13 12 10 16 16 C 1.54325 * 102.94184 * 82.57497 * 15 13 12 17 17 N 1.47022 * 107.26948 * 22.19107 * 16 15 13 18 18 C 1.36945 * 125.64832 * 181.02381 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47423 * 108.70390 * 1.29074 * 17 16 15 27 27 N 1.28884 * 125.45415 * 180.31423 * 5 2 1 28 28 H 1.09007 * 109.47166 * 299.99173 * 1 2 3 29 29 H 1.08997 * 109.47612 * 59.99828 * 1 2 3 30 30 H 1.09004 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47457 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46851 * 300.00467 * 3 2 1 33 33 H 1.08998 * 109.46952 * 60.00210 * 3 2 1 34 34 H 1.08998 * 109.46797 * 299.99128 * 4 2 1 35 35 H 1.08997 * 109.47369 * 59.99423 * 4 2 1 36 36 H 1.09001 * 109.46854 * 179.97438 * 4 2 1 37 37 H 1.08994 * 109.47454 * 330.02372 * 9 8 7 38 38 H 1.09002 * 109.46890 * 210.02172 * 9 8 7 39 39 H 0.97003 * 120.00176 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47690 * 183.89832 * 14 13 12 41 41 H 1.08999 * 109.46882 * 303.90238 * 14 13 12 42 42 H 1.09005 * 109.47260 * 63.90076 * 14 13 12 43 43 H 1.09000 * 110.72140 * 324.21327 * 15 13 12 44 44 H 1.08998 * 110.72520 * 200.93646 * 15 13 12 45 45 H 1.09002 * 109.88274 * 262.77538 * 16 15 13 46 46 H 1.09000 * 110.01178 * 141.68100 * 16 15 13 47 47 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.37068 * 94.48354 * 26 17 16 49 49 H 1.09005 * 110.36651 * 216.80519 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0184 -0.6907 1.1960 6 7 1.2784 -1.2173 2.1089 7 7 2.0401 -1.7376 3.0106 8 6 3.3019 -1.5220 2.6379 9 6 4.5422 -1.9501 3.3790 10 6 4.9562 -3.3228 2.9147 11 8 4.3076 -3.8971 2.0660 12 7 6.0465 -3.9126 3.4435 13 6 6.4486 -5.2472 2.9925 14 6 6.6542 -5.2727 1.4766 15 6 7.7253 -5.7238 3.7345 16 6 7.1670 -6.2775 5.0624 17 7 5.7530 -6.6109 4.8361 18 6 4.8914 -7.1132 5.7745 19 1 3.8669 -7.3266 5.5076 20 6 5.3348 -7.3478 7.0687 21 7 6.5832 -7.0872 7.3942 22 14 4.1592 -8.0323 8.3490 23 1 4.8729 -8.1914 9.6415 24 1 3.0192 -7.0971 8.5244 25 1 3.6513 -9.3530 7.8988 26 6 5.4182 -6.3211 3.4299 27 7 3.2575 -0.8631 1.5061 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2496 37 1 4.3356 -1.9754 4.4489 38 1 5.3465 -1.2417 3.1809 39 1 6.5651 -3.4535 4.1226 40 1 6.8845 -6.2893 1.1581 41 1 5.7445 -4.9339 0.9809 42 1 7.4801 -4.6129 1.2108 43 1 8.3993 -4.8872 3.9186 44 1 8.2287 -6.5091 3.1706 45 1 7.2491 -5.5212 5.8431 46 1 7.7168 -7.1723 5.3539 47 1 6.8929 -7.2509 8.2987 48 1 5.5222 -7.2199 2.8221 49 1 4.4048 -5.9266 3.3548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733404448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:02 Heat of formation + Delta-G solvation = 89.740545 kcal Electronic energy + Delta-G solvation = -30100.696652 eV Core-core repulsion = 26100.834295 eV Total energy + Delta-G solvation = -3999.862357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.37356 -41.23141 -39.02453 -38.50745 -35.66008 -34.65210 -34.21462 -33.59794 -31.89419 -30.51986 -29.94161 -28.50890 -28.39277 -27.50866 -25.63499 -25.44113 -23.98969 -22.31371 -21.77813 -21.47332 -20.47511 -19.02796 -18.49814 -18.01110 -17.63899 -17.16008 -16.68528 -16.35454 -15.96931 -15.60564 -15.29199 -15.19320 -15.05594 -14.83758 -14.62512 -14.22157 -14.04580 -13.85726 -13.58772 -13.46839 -13.42636 -13.24728 -13.22179 -12.97868 -12.88418 -12.84996 -12.75745 -12.72781 -12.55592 -12.14643 -12.11131 -12.03844 -11.97366 -11.93288 -11.83930 -11.68755 -11.57016 -11.21108 -10.70307 -10.56121 -9.98864 -8.85457 -7.85263 -5.18695 0.22720 0.94409 1.06759 1.43927 1.46389 1.52852 1.66390 2.26583 2.48806 2.82806 3.18540 3.32591 3.53255 3.58490 3.60086 3.67461 3.70814 3.89028 4.05772 4.21230 4.22338 4.41910 4.47088 4.52380 4.53612 4.61222 4.66334 4.66912 4.71291 4.72023 4.73280 4.77638 4.85600 4.87057 4.94227 5.02398 5.02680 5.10810 5.12242 5.22105 5.37503 5.38070 5.43160 5.66369 5.71974 5.80377 6.21406 6.64846 7.13078 7.31436 7.35151 7.78177 8.42140 9.24098 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002845 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.157249 B = 9840.572759 C =10872.163050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 C -0.151 4.151 4 C -0.154 4.154 5 N -0.118 5.118 6 N -0.081 5.081 7 N -0.316 5.316 8 C 0.178 3.822 9 C -0.041 4.041 10 C 0.522 3.478 11 O -0.573 6.573 12 N -0.693 5.693 13 C 0.170 3.830 14 C -0.142 4.142 15 C -0.127 4.127 16 C 0.184 3.816 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.064 0.936 20 C -0.056 4.056 21 N -0.943 5.943 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.131 3.869 27 N -0.298 5.298 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.161 0.839 39 H 0.413 0.587 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.022 0.978 46 H 0.008 0.992 47 H 0.248 0.752 48 H 0.021 0.979 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 20.883 -18.398 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.082 3.918 3 C -0.209 4.209 4 C -0.212 4.212 5 N -0.034 5.034 6 N -0.073 5.073 7 N -0.186 5.186 8 C -0.105 4.105 9 C -0.083 4.083 10 C 0.308 3.692 11 O -0.453 6.453 12 N -0.344 5.344 13 C 0.083 3.917 14 C -0.200 4.200 15 C -0.165 4.165 16 C 0.059 3.941 17 N -0.346 5.346 18 C -0.373 4.373 19 H 0.082 0.918 20 C -0.249 4.249 21 N -0.592 5.592 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.004 3.996 27 N -0.149 5.149 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.179 0.821 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.041 0.959 46 H 0.026 0.974 47 H 0.058 0.942 48 H 0.038 0.962 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.996 20.504 -18.920 28.184 hybrid contribution -0.083 -0.977 1.680 1.945 sum -4.079 19.527 -17.240 26.366 Atomic orbital electron populations 1.22137 0.88924 1.04048 1.05661 1.22029 0.97563 0.93693 0.78560 1.22243 1.02731 0.90510 1.05408 1.22256 1.02558 1.00499 0.95937 1.50991 1.00724 1.33509 1.18210 1.78809 1.22346 1.10016 0.96155 1.75807 1.01998 1.19217 1.21549 1.25008 0.95024 0.98350 0.92098 1.20004 0.92173 0.94871 1.01238 1.20478 0.79925 0.87588 0.81205 1.90651 1.53935 1.66492 1.34235 1.45640 1.28584 1.17548 1.42630 1.21333 0.94185 0.81497 0.94731 1.21935 1.02671 1.02918 0.92471 1.23099 0.95525 1.01824 0.96045 1.20979 0.83224 0.96636 0.93229 1.44672 1.08468 1.75578 1.05892 1.19242 0.92298 1.35210 0.90504 0.91799 1.25471 0.98170 1.02433 0.98850 1.70123 1.15443 1.54860 1.18763 0.85269 0.78036 0.78265 0.78462 1.21245 1.20808 1.20836 1.22002 0.96925 0.95114 0.85548 1.74465 1.03870 1.20761 1.15796 0.91318 0.85504 0.92307 0.91240 0.85600 0.92037 0.93344 0.85368 0.91591 0.84536 0.82119 0.74999 0.91202 0.92383 0.90225 0.87894 0.89237 0.95944 0.97395 0.94219 0.96153 0.96145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 7.91 71.98 0.57 -1.16 16 2 C 0.16 2.42 1.30 3.61 0.00 2.42 16 3 C -0.15 -1.44 8.66 71.98 0.62 -0.81 16 4 C -0.15 -2.00 8.67 71.98 0.62 -1.37 16 5 N -0.12 -3.05 3.73 -152.40 -0.57 -3.62 16 6 N -0.08 -2.58 12.24 37.02 0.45 -2.13 16 7 N -0.32 -11.38 12.50 -51.26 -0.64 -12.02 16 8 C 0.18 5.55 6.86 138.55 0.95 6.51 16 9 C -0.04 -1.02 6.33 29.10 0.18 -0.84 16 10 C 0.52 17.06 7.21 87.66 0.63 17.70 16 11 O -0.57 -23.51 12.87 -3.02 -0.04 -23.55 16 12 N -0.69 -21.22 5.19 -416.31 -2.16 -23.38 16 13 C 0.17 5.83 0.82 5.07 0.00 5.83 16 14 C -0.14 -4.15 8.59 71.98 0.62 -3.53 16 15 C -0.13 -4.19 5.97 31.78 0.19 -4.00 16 16 C 0.18 8.72 5.37 86.73 0.47 9.19 16 17 N -0.62 -32.88 3.39 -691.55 -2.35 -35.23 16 18 C -0.24 -14.41 10.28 84.03 0.86 -13.54 16 19 H 0.06 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 21 N -0.94 -56.26 10.31 21.65 0.22 -56.04 16 22 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 26 C 0.13 5.97 6.18 86.93 0.54 6.51 16 27 N -0.30 -8.38 11.83 -51.20 -0.61 -8.99 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.41 10.44 8.51 -92.71 -0.79 9.65 16 40 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 41 H 0.06 1.97 5.92 -2.39 -0.01 1.96 16 42 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.10 2.68 8.09 -2.39 -0.02 2.66 16 44 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 45 H 0.02 1.15 7.38 -2.39 -0.02 1.14 16 46 H 0.01 0.42 7.50 -2.39 -0.02 0.40 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.02 0.95 7.99 -2.39 -0.02 0.93 16 49 H 0.02 1.04 6.89 -2.38 -0.02 1.02 16 Total: -1.00 -83.64 394.77 3.24 -80.41 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.16 Total: 14.93 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.73 Total: 20.11 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -5.64 Total: -141.40 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.04 Total: -23.55 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -83.64 3.24 -80.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733404448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.147 kcal (2) G-P(sol) polarization free energy of solvation -83.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds