Wall clock time and date at job start Tue Mar 31 2020 19:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46828 * 2 1 4 4 C 1.53000 * 109.47397 * 239.99652 * 2 1 3 5 5 N 1.46500 * 109.46681 * 119.99594 * 2 1 3 6 6 N 1.28790 * 125.44541 * 239.99808 * 5 2 1 7 7 N 1.28999 * 108.72259 * 179.73053 * 6 5 2 8 8 C 1.33322 * 107.35747 * 0.43419 * 7 6 5 9 9 C 1.50698 * 126.55096 * 179.83495 * 8 7 6 10 10 C 1.50698 * 109.46944 * 269.68540 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.53009 * 110.64265 * 300.97893 * 13 12 10 15 15 C 1.55154 * 110.72156 * 177.83849 * 13 12 10 16 16 C 1.55389 * 101.36390 * 277.04318 * 15 13 12 17 17 N 1.47415 * 104.87481 * 323.01292 * 16 15 13 18 18 C 1.36941 * 125.65411 * 204.09517 * 17 16 15 19 19 H 1.07989 * 120.00541 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99429 * 0.04459 * 18 17 16 21 21 N 1.31625 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47013 * 90.00404 * 22 20 18 24 24 H 1.48501 * 109.47240 * 209.99911 * 22 20 18 25 25 H 1.48493 * 109.47408 * 330.00138 * 22 20 18 26 26 C 1.47026 * 108.70109 * 24.13489 * 17 16 15 27 27 N 1.28883 * 125.45431 * 60.00493 * 5 2 1 28 28 H 1.08995 * 109.47741 * 300.00041 * 1 2 3 29 29 H 1.09003 * 109.47354 * 60.00707 * 1 2 3 30 30 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46786 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47198 * 299.99340 * 3 2 1 33 33 H 1.08994 * 109.47614 * 59.99934 * 3 2 1 34 34 H 1.09004 * 109.47100 * 299.99893 * 4 2 1 35 35 H 1.08997 * 109.46948 * 59.99916 * 4 2 1 36 36 H 1.08999 * 109.47282 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.46601 * 149.68981 * 9 8 7 38 38 H 1.08993 * 109.46922 * 29.69280 * 9 8 7 39 39 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.47055 * 59.29932 * 14 13 12 41 41 H 1.08997 * 109.47044 * 179.30022 * 14 13 12 42 42 H 1.08998 * 109.46903 * 299.29716 * 14 13 12 43 43 H 1.08999 * 111.00630 * 35.21308 * 15 13 12 44 44 H 1.09003 * 111.01004 * 159.06626 * 15 13 12 45 45 H 1.09009 * 110.34195 * 204.16270 * 16 15 13 46 46 H 1.08996 * 110.34927 * 81.87284 * 16 15 13 47 47 H 0.96997 * 119.99859 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.88047 * 239.51985 * 26 17 16 49 49 H 1.09007 * 109.88197 * 118.36211 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6905 1.1963 6 7 2.7618 -0.1683 2.1090 7 7 2.9938 -1.0582 3.0135 8 6 2.3751 -2.1779 2.6378 9 6 2.3652 -3.4898 3.3792 10 6 3.5220 -4.3373 2.9159 11 8 4.2802 -3.9171 2.0676 12 7 3.7147 -5.5618 3.4451 13 6 4.8357 -6.3880 2.9904 14 6 4.7388 -6.6478 1.4856 15 6 4.8864 -7.7250 3.7761 16 6 5.6398 -7.2943 5.0650 17 7 6.6440 -6.3168 4.6076 18 6 7.8125 -6.0114 5.2530 19 1 8.4846 -5.2770 4.8345 20 6 8.1331 -6.6460 6.4452 21 7 7.3138 -7.5410 6.9554 22 14 9.7274 -6.2300 7.3254 23 1 9.4923 -5.1108 8.2727 24 1 10.2046 -7.4203 8.0742 25 1 10.7526 -5.8283 6.3291 26 6 6.1827 -5.7232 3.3440 27 7 1.7725 -1.9178 1.5036 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.4295 -4.0124 3.1804 38 1 2.4570 -3.3032 4.4491 39 1 3.1086 -5.8977 4.1238 40 1 4.7483 -5.6977 0.9516 41 1 5.5873 -7.2528 1.1660 42 1 3.8119 -7.1781 1.2675 43 1 3.8823 -8.0808 4.0070 44 1 5.4500 -8.4796 3.2274 45 1 6.1287 -8.1541 5.5234 46 1 4.9505 -6.8288 5.7694 47 1 7.5381 -7.9847 7.7883 48 1 6.9102 -5.9174 2.5559 49 1 6.0448 -4.6490 3.4676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733404452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:08 Heat of formation + Delta-G solvation = 117.482233 kcal Electronic energy + Delta-G solvation = -29948.548824 eV Core-core repulsion = 25949.889437 eV Total energy + Delta-G solvation = -3998.659387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.32262 -39.89307 -37.95946 -37.26487 -33.98259 -33.55470 -33.21023 -31.90392 -30.25720 -29.07205 -28.56228 -28.01050 -27.81799 -25.63539 -24.63749 -23.72949 -22.76075 -20.87082 -20.60082 -20.21753 -18.99317 -17.55536 -17.26649 -16.94007 -16.42496 -15.71629 -15.16794 -14.87419 -14.63602 -14.58282 -14.41424 -13.87471 -13.69241 -13.51331 -13.37070 -13.06229 -12.93529 -12.81588 -12.76605 -12.49842 -12.30817 -12.16597 -12.01237 -11.90736 -11.76081 -11.69513 -11.52609 -11.44606 -10.89517 -10.87834 -10.81900 -10.80286 -10.40438 -10.31262 -10.19433 -10.04621 -9.88402 -9.61405 -9.23200 -8.63159 -8.58674 -6.76419 -5.60800 -3.00768 1.27587 1.76567 2.18388 2.88923 3.41721 3.44961 3.49799 3.51780 3.74065 4.04262 4.09188 4.19437 4.50331 4.54384 4.88080 4.93905 4.96271 5.03160 5.11673 5.14429 5.20103 5.20277 5.24437 5.39585 5.44824 5.48719 5.53855 5.60193 5.61732 5.64818 5.74718 5.77202 5.90574 6.06070 6.19336 6.22439 6.25992 6.38185 6.48669 6.54488 6.73659 6.87765 7.17734 7.49117 7.68352 7.81536 7.88981 8.39651 8.43740 8.52180 9.28162 9.88649 10.53411 11.43639 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.002588 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.541135 B =10818.003188 C =11526.210760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.180 3.820 3 C -0.153 4.153 4 C -0.159 4.159 5 N -0.133 5.133 6 N -0.064 5.064 7 N -0.273 5.273 8 C 0.191 3.809 9 C -0.047 4.047 10 C 0.523 3.477 11 O -0.530 6.530 12 N -0.705 5.705 13 C 0.161 3.839 14 C -0.150 4.150 15 C -0.147 4.147 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.215 4.215 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.137 3.863 27 N -0.298 5.298 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.399 0.601 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.011 0.989 47 H 0.251 0.749 48 H 0.029 0.971 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.768 10.790 -15.066 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.098 3.902 3 C -0.211 4.211 4 C -0.217 4.217 5 N -0.046 5.046 6 N -0.056 5.056 7 N -0.144 5.144 8 C -0.092 4.092 9 C -0.090 4.090 10 C 0.307 3.693 11 O -0.406 6.406 12 N -0.356 5.356 13 C 0.075 3.925 14 C -0.208 4.208 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.344 4.344 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.575 5.575 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.011 3.989 27 N -0.148 5.148 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.233 0.767 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.029 0.971 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.940 11.700 -15.647 26.525 hybrid contribution 0.406 -0.401 0.999 1.150 sum -17.534 11.298 -14.648 25.489 Atomic orbital electron populations 1.22217 0.91036 1.04430 1.03859 1.21331 0.95941 0.93007 0.79872 1.22082 1.03340 0.91581 1.04081 1.22227 1.02714 1.01887 0.94881 1.50386 1.30523 1.05628 1.18083 1.78907 1.08701 1.22540 0.95499 1.75851 1.19664 0.98884 1.19959 1.24587 0.96238 0.96924 0.91466 1.19897 1.00201 0.87821 1.01038 1.19959 0.85587 0.81714 0.82081 1.90694 1.46306 1.71502 1.32092 1.45884 1.30942 1.16231 1.42577 1.21342 0.86349 0.91224 0.93579 1.22044 1.01196 1.02543 0.95052 1.23440 1.00562 0.94599 0.99978 1.22020 0.89652 0.95384 0.90116 1.44497 1.20714 1.45566 1.22213 1.19098 0.94814 1.18130 1.02352 0.90587 1.24750 0.98878 0.99370 0.97825 1.69774 1.36400 1.30112 1.21203 0.86070 0.82776 0.77177 0.79513 1.21676 1.21704 1.20738 1.21595 0.91467 0.96351 0.89515 1.74502 1.24650 0.99346 1.16285 0.91481 0.89302 0.90460 0.90524 0.89388 0.90649 0.90422 0.89368 0.91242 0.86252 0.85643 0.76667 0.90956 0.91848 0.93173 0.91806 0.90573 0.87472 0.97089 0.93845 0.95352 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.66 37.16 0.32 -0.59 16 2 C 0.18 1.44 1.30 -131.82 -0.17 1.27 16 3 C -0.15 -0.97 7.91 37.16 0.29 -0.68 16 4 C -0.16 -1.14 8.66 37.16 0.32 -0.82 16 5 N -0.13 -1.68 3.73 0.48 0.00 -1.68 16 6 N -0.06 -0.97 12.24 60.35 0.74 -0.23 16 7 N -0.27 -4.64 12.50 32.45 0.41 -4.23 16 8 C 0.19 2.88 6.86 -156.62 -1.07 1.81 16 9 C -0.05 -0.58 6.33 -29.04 -0.18 -0.76 16 10 C 0.52 8.43 7.04 -10.99 -0.08 8.36 16 11 O -0.53 -10.63 12.98 5.55 0.07 -10.56 16 12 N -0.71 -10.88 5.15 -45.91 -0.24 -11.12 16 13 C 0.16 2.89 0.80 -129.99 -0.10 2.78 16 14 C -0.15 -2.41 8.40 37.16 0.31 -2.09 16 15 C -0.15 -2.64 6.11 -24.32 -0.15 -2.79 16 16 C 0.15 3.63 5.88 -2.27 -0.01 3.62 16 17 N -0.60 -15.90 3.40 -169.77 -0.58 -16.47 16 18 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 21 N -0.93 -27.07 10.09 55.49 0.56 -26.51 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 26 C 0.14 3.15 6.16 -3.07 -0.02 3.13 16 27 N -0.30 -4.16 11.83 32.47 0.38 -3.77 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.40 5.02 8.48 -40.82 -0.35 4.68 16 40 H 0.07 1.28 6.20 -51.93 -0.32 0.95 16 41 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 44 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 45 H 0.11 2.87 5.87 -51.92 -0.31 2.57 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.03 0.67 7.80 -51.93 -0.41 0.26 16 49 H 0.03 0.83 6.69 -51.92 -0.35 0.48 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -36.52 393.91 -6.56 -43.08 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.02 Total: 1.50 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.79 Total: 6.38 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: 1.28 Total: -64.02 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.52 -6.56 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733404452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.559 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds