Wall clock time and date at job start Tue Mar 31 2020 19:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46828 * 2 1 4 4 C 1.53000 * 109.47397 * 239.99652 * 2 1 3 5 5 N 1.46500 * 109.46681 * 119.99594 * 2 1 3 6 6 N 1.28790 * 125.44541 * 239.99808 * 5 2 1 7 7 N 1.28999 * 108.72259 * 179.73053 * 6 5 2 8 8 C 1.33322 * 107.35747 * 0.43419 * 7 6 5 9 9 C 1.50698 * 126.55096 * 179.83495 * 8 7 6 10 10 C 1.50698 * 109.46944 * 269.68540 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.53009 * 110.64265 * 300.97893 * 13 12 10 15 15 C 1.55154 * 110.72156 * 177.83849 * 13 12 10 16 16 C 1.55389 * 101.36390 * 277.04318 * 15 13 12 17 17 N 1.47415 * 104.87481 * 323.01292 * 16 15 13 18 18 C 1.36941 * 125.65411 * 204.09517 * 17 16 15 19 19 H 1.07989 * 120.00541 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99429 * 0.04459 * 18 17 16 21 21 N 1.31625 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47013 * 90.00404 * 22 20 18 24 24 H 1.48501 * 109.47240 * 209.99911 * 22 20 18 25 25 H 1.48493 * 109.47408 * 330.00138 * 22 20 18 26 26 C 1.47026 * 108.70109 * 24.13489 * 17 16 15 27 27 N 1.28883 * 125.45431 * 60.00493 * 5 2 1 28 28 H 1.08995 * 109.47741 * 300.00041 * 1 2 3 29 29 H 1.09003 * 109.47354 * 60.00707 * 1 2 3 30 30 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46786 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47198 * 299.99340 * 3 2 1 33 33 H 1.08994 * 109.47614 * 59.99934 * 3 2 1 34 34 H 1.09004 * 109.47100 * 299.99893 * 4 2 1 35 35 H 1.08997 * 109.46948 * 59.99916 * 4 2 1 36 36 H 1.08999 * 109.47282 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.46601 * 149.68981 * 9 8 7 38 38 H 1.08993 * 109.46922 * 29.69280 * 9 8 7 39 39 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.47055 * 59.29932 * 14 13 12 41 41 H 1.08997 * 109.47044 * 179.30022 * 14 13 12 42 42 H 1.08998 * 109.46903 * 299.29716 * 14 13 12 43 43 H 1.08999 * 111.00630 * 35.21308 * 15 13 12 44 44 H 1.09003 * 111.01004 * 159.06626 * 15 13 12 45 45 H 1.09009 * 110.34195 * 204.16270 * 16 15 13 46 46 H 1.08996 * 110.34927 * 81.87284 * 16 15 13 47 47 H 0.96997 * 119.99859 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.88047 * 239.51985 * 26 17 16 49 49 H 1.09007 * 109.88197 * 118.36211 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6905 1.1963 6 7 2.7618 -0.1683 2.1090 7 7 2.9938 -1.0582 3.0135 8 6 2.3751 -2.1779 2.6378 9 6 2.3652 -3.4898 3.3792 10 6 3.5220 -4.3373 2.9159 11 8 4.2802 -3.9171 2.0676 12 7 3.7147 -5.5618 3.4451 13 6 4.8357 -6.3880 2.9904 14 6 4.7388 -6.6478 1.4856 15 6 4.8864 -7.7250 3.7761 16 6 5.6398 -7.2943 5.0650 17 7 6.6440 -6.3168 4.6076 18 6 7.8125 -6.0114 5.2530 19 1 8.4846 -5.2770 4.8345 20 6 8.1331 -6.6460 6.4452 21 7 7.3138 -7.5410 6.9554 22 14 9.7274 -6.2300 7.3254 23 1 9.4923 -5.1108 8.2727 24 1 10.2046 -7.4203 8.0742 25 1 10.7526 -5.8283 6.3291 26 6 6.1827 -5.7232 3.3440 27 7 1.7725 -1.9178 1.5036 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.4295 -4.0124 3.1804 38 1 2.4570 -3.3032 4.4491 39 1 3.1086 -5.8977 4.1238 40 1 4.7483 -5.6977 0.9516 41 1 5.5873 -7.2528 1.1660 42 1 3.8119 -7.1781 1.2675 43 1 3.8823 -8.0808 4.0070 44 1 5.4500 -8.4796 3.2274 45 1 6.1287 -8.1541 5.5234 46 1 4.9505 -6.8288 5.7694 47 1 7.5381 -7.9847 7.7883 48 1 6.9102 -5.9174 2.5559 49 1 6.0448 -4.6490 3.4676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733404452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:07 Heat of formation + Delta-G solvation = 90.708359 kcal Electronic energy + Delta-G solvation = -29949.709826 eV Core-core repulsion = 25949.889437 eV Total energy + Delta-G solvation = -3999.820390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.37760 -41.28581 -39.02816 -38.51173 -35.74344 -34.66017 -34.22340 -33.59822 -31.89395 -30.48295 -29.97108 -28.51499 -28.39882 -27.55123 -25.64563 -25.44140 -23.97384 -22.31965 -21.87379 -21.49817 -20.46543 -19.04103 -18.53401 -18.01570 -17.66754 -17.20610 -16.74428 -16.36988 -15.94655 -15.59268 -15.28675 -15.17862 -15.06448 -14.64017 -14.62691 -14.37090 -14.05247 -14.02897 -13.65847 -13.43603 -13.30388 -13.29388 -13.22995 -13.00960 -12.89999 -12.85376 -12.78373 -12.74933 -12.56223 -12.15279 -12.08929 -12.03017 -11.96016 -11.93978 -11.84556 -11.68632 -11.54951 -11.22491 -10.75335 -10.60968 -10.02402 -8.88359 -7.79206 -5.22372 0.22202 0.93539 1.06172 1.44234 1.45926 1.54734 1.64398 2.22898 2.47927 2.82005 3.17763 3.29682 3.52727 3.59105 3.60452 3.67269 3.72301 3.86846 4.02922 4.18287 4.21871 4.41333 4.46605 4.52171 4.53390 4.60676 4.63299 4.66773 4.70048 4.71559 4.72939 4.77488 4.82754 4.88774 4.92575 5.01762 5.01948 5.11611 5.11788 5.21659 5.33399 5.36966 5.42258 5.63363 5.70123 5.81877 6.32046 6.62190 7.11645 7.30001 7.34448 7.77236 8.40414 9.21889 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.002588 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.541135 B =10818.003188 C =11526.210760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.118 5.118 6 N -0.081 5.081 7 N -0.316 5.316 8 C 0.177 3.823 9 C -0.039 4.039 10 C 0.520 3.480 11 O -0.574 6.574 12 N -0.697 5.697 13 C 0.172 3.828 14 C -0.140 4.140 15 C -0.126 4.126 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.065 0.935 20 C -0.059 4.059 21 N -0.942 5.942 22 Si 0.977 3.023 23 H -0.288 1.288 24 H -0.285 1.285 25 H -0.276 1.276 26 C 0.138 3.862 27 N -0.299 5.299 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.047 0.953 37 H 0.163 0.837 38 H 0.141 0.859 39 H 0.416 0.584 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.076 0.924 46 H -0.003 1.003 47 H 0.249 0.751 48 H 0.015 0.985 49 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.131 10.638 -16.367 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.082 3.918 3 C -0.208 4.208 4 C -0.213 4.213 5 N -0.034 5.034 6 N -0.073 5.073 7 N -0.185 5.185 8 C -0.106 4.106 9 C -0.081 4.081 10 C 0.306 3.694 11 O -0.453 6.453 12 N -0.349 5.349 13 C 0.086 3.914 14 C -0.198 4.198 15 C -0.164 4.164 16 C 0.030 3.970 17 N -0.349 5.349 18 C -0.372 4.372 19 H 0.083 0.917 20 C -0.252 4.252 21 N -0.591 5.591 22 Si 0.805 3.195 23 H -0.215 1.215 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.011 3.989 27 N -0.150 5.150 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.181 0.819 38 H 0.159 0.841 39 H 0.253 0.747 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.033 0.967 49 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -20.336 11.547 -16.937 28.875 hybrid contribution 1.142 -0.277 1.323 1.770 sum -19.194 11.270 -15.614 27.189 Atomic orbital electron populations 1.22240 0.88774 1.04416 1.05431 1.22024 0.97689 0.93576 0.78536 1.22137 1.02201 0.90750 1.05686 1.22257 1.01304 1.01720 0.96006 1.50989 1.28854 1.05312 1.18285 1.78815 1.09680 1.22698 0.96134 1.75796 1.21234 1.00041 1.21470 1.25052 0.96180 0.97410 0.91976 1.20023 1.00295 0.86421 1.01407 1.20573 0.85901 0.81731 0.81201 1.90683 1.48087 1.72357 1.34173 1.45759 1.30268 1.16057 1.42865 1.21118 0.84522 0.90721 0.95075 1.21949 1.02989 1.02026 0.92840 1.23289 1.02112 0.94490 0.96536 1.21870 0.89083 0.93458 0.92632 1.44776 1.20610 1.46432 1.23097 1.19330 0.96143 1.18486 1.03282 0.91686 1.25517 1.01958 0.99346 0.98362 1.70000 1.37561 1.30400 1.21160 0.85113 0.79251 0.76917 0.78243 1.21489 1.21105 1.20127 1.21655 0.94293 0.94993 0.87948 1.74466 1.24707 0.99934 1.15866 0.91975 0.85621 0.91236 0.92356 0.85518 0.91258 0.91599 0.85378 0.93420 0.81936 0.84072 0.74678 0.92782 0.91627 0.89933 0.87427 0.89991 0.90628 0.98475 0.94082 0.96661 0.97910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.66 71.98 0.62 -0.75 16 2 C 0.16 2.37 1.30 3.60 0.00 2.37 16 3 C -0.15 -1.69 7.91 71.98 0.57 -1.12 16 4 C -0.15 -1.99 8.66 71.98 0.62 -1.37 16 5 N -0.12 -2.99 3.73 -152.40 -0.57 -3.55 16 6 N -0.08 -2.53 12.24 37.02 0.45 -2.08 16 7 N -0.32 -11.02 12.50 -51.26 -0.64 -11.66 16 8 C 0.18 5.31 6.86 138.55 0.95 6.27 16 9 C -0.04 -0.92 6.33 29.10 0.18 -0.73 16 10 C 0.52 16.41 7.04 87.66 0.62 17.03 16 11 O -0.57 -23.45 12.98 -3.04 -0.04 -23.49 16 12 N -0.70 -20.39 5.15 -417.57 -2.15 -22.54 16 13 C 0.17 6.00 0.80 4.79 0.00 6.00 16 14 C -0.14 -4.23 8.40 71.99 0.61 -3.63 16 15 C -0.13 -4.26 6.11 32.15 0.20 -4.06 16 16 C 0.15 7.34 5.88 87.03 0.51 7.85 16 17 N -0.62 -33.69 3.40 -691.04 -2.35 -36.04 16 18 C -0.24 -14.52 10.27 84.03 0.86 -13.66 16 19 H 0.07 3.89 7.83 -2.92 -0.02 3.87 16 20 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 21 N -0.94 -55.91 10.09 21.65 0.22 -55.69 16 22 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 C 0.14 6.49 6.16 86.73 0.53 7.02 16 27 N -0.30 -8.21 11.83 -51.20 -0.61 -8.81 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 35 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.42 9.32 8.48 -92.71 -0.79 8.53 16 40 H 0.05 1.87 6.20 -2.39 -0.01 1.86 16 41 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.11 2.75 8.06 -2.39 -0.02 2.73 16 44 H 0.08 2.73 8.05 -2.39 -0.02 2.71 16 45 H 0.08 4.11 5.87 -2.38 -0.01 4.10 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 48 H 0.02 0.75 7.80 -2.39 -0.02 0.73 16 49 H 0.00 0.15 6.69 -2.38 -0.02 0.14 16 Total: -1.00 -84.60 393.91 3.27 -81.33 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.17 Total: 14.92 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.75 Total: 18.26 kcal Atomic # 7 Polarization: -134.74 SS G_CDS: -5.64 Total: -140.38 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.04 Total: -23.49 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -84.60 3.27 -81.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733404452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.036 kcal (2) G-P(sol) polarization free energy of solvation -84.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds