Wall clock time and date at job start Tue Mar 31 2020 19:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47102 * 270.00281 * 3 2 1 5 5 H 1.48504 * 109.47006 * 30.00521 * 3 2 1 6 6 H 1.48506 * 109.47130 * 150.00218 * 3 2 1 7 7 C 1.38814 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00372 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99799 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00059 * 179.97438 * 9 7 2 11 11 C 1.53111 * 109.52294 * 204.99773 * 10 9 7 12 12 C 1.53041 * 109.27651 * 182.37804 * 11 10 9 13 13 N 1.46852 * 109.52502 * 59.18106 * 12 11 10 14 14 C 1.46894 * 111.00069 * 174.15949 * 13 12 11 15 15 C 1.52999 * 109.46966 * 169.99930 * 14 13 12 16 16 N 1.46506 * 109.46951 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99507 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00438 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99537 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46982 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47084 * 179.97438 * 20 19 17 22 22 C 1.34429 * 126.81895 * 124.99739 * 21 20 19 23 23 N 1.30837 * 108.07952 * 180.02562 * 22 21 20 24 24 C 1.33246 * 109.82318 * 359.97438 * 23 22 21 25 25 N 1.30712 * 108.94935 * 0.27015 * 24 23 22 26 26 C 1.46841 * 111.19600 * 298.26141 * 13 12 11 27 27 C 1.53034 * 109.52659 * 61.73676 * 26 13 12 28 28 H 0.97000 * 119.99312 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00213 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.52104 * 325.13252 * 10 9 7 31 31 H 1.09000 * 109.50719 * 62.43872 * 11 10 9 32 32 H 1.08997 * 109.50656 * 302.31751 * 11 10 9 33 33 H 1.08997 * 109.46350 * 299.16215 * 12 11 10 34 34 H 1.09000 * 109.45252 * 179.19010 * 12 11 10 35 35 H 1.09002 * 109.47099 * 49.99848 * 14 13 12 36 36 H 1.08995 * 109.47218 * 290.00263 * 14 13 12 37 37 H 1.08993 * 109.47011 * 60.00003 * 15 14 13 38 38 H 1.08996 * 109.46981 * 299.99909 * 15 14 13 39 39 H 0.96992 * 119.99953 * 359.97438 * 16 15 14 40 40 H 1.09002 * 109.47233 * 59.99445 * 19 17 16 41 41 H 1.08996 * 109.47047 * 299.99315 * 19 17 16 42 42 H 1.09002 * 109.47279 * 59.99854 * 20 19 17 43 43 H 1.08995 * 109.47424 * 300.00033 * 20 19 17 44 44 H 1.08000 * 125.96340 * 359.97438 * 22 21 20 45 45 H 1.08002 * 125.52127 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46371 * 181.75658 * 26 13 12 47 47 H 1.09009 * 109.46065 * 301.72557 * 26 13 12 48 48 H 1.09010 * 109.50415 * 180.88215 * 27 26 13 49 49 H 1.09001 * 109.50188 * 60.76637 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.5009 -2.2601 0.6082 12 6 6.2825 -3.5745 0.5512 13 7 6.4024 -4.0142 -0.8448 14 6 7.2645 -5.1988 -0.9515 15 6 7.1681 -5.7739 -2.3660 16 7 8.0274 -6.9558 -2.4722 17 6 8.1029 -7.6315 -3.6358 18 8 7.4593 -7.2616 -4.5949 19 6 8.9873 -8.8469 -3.7453 20 6 8.8908 -9.4221 -5.1597 21 7 9.7510 -10.6032 -5.2663 22 6 9.3833 -11.8347 -5.6603 23 7 10.4390 -12.6064 -5.6189 24 6 11.4946 -11.9062 -5.2057 25 7 11.1224 -10.6752 -4.9719 26 6 5.0828 -4.2686 -1.4365 27 6 4.2653 -2.9749 -1.4389 28 1 -0.4849 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.5645 -3.2078 0.5866 31 1 5.3987 -1.9421 1.6458 32 1 6.0337 -1.4951 0.0434 33 1 5.7563 -4.3353 1.1277 34 1 7.2770 -3.4240 0.9712 35 1 6.9406 -5.9499 -0.2310 36 1 8.2966 -4.9170 -0.7433 37 1 7.4919 -5.0229 -3.0864 38 1 6.1359 -6.0558 -2.5740 39 1 8.5424 -7.2514 -1.7053 40 1 8.6633 -9.5981 -3.0250 41 1 10.0194 -8.5651 -3.5369 42 1 9.2146 -8.6710 -5.8803 43 1 7.8587 -9.7039 -5.3677 44 1 8.3895 -12.1350 -5.9582 45 1 12.4946 -12.2941 -5.0795 46 1 5.2058 -4.6223 -2.4601 47 1 4.5620 -5.0261 -0.8507 48 1 3.2801 -3.1676 -1.8638 49 1 4.7787 -2.2211 -2.0359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733577218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:53 Heat of formation + Delta-G solvation = 75.217022 kcal Electronic energy + Delta-G solvation = -27769.247665 eV Core-core repulsion = 23768.755521 eV Total energy + Delta-G solvation = -4000.492145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.52695 -40.29378 -39.04642 -36.14259 -35.32845 -34.62405 -32.40673 -31.69703 -31.32880 -30.66801 -30.21892 -28.09528 -25.54668 -24.30685 -23.28340 -22.47814 -22.26564 -21.81679 -21.11309 -20.71210 -19.54316 -18.26912 -17.54920 -17.07875 -16.76572 -16.49425 -16.00544 -15.56874 -15.33469 -15.20346 -14.76938 -14.64230 -14.50711 -14.21932 -13.97610 -13.85000 -13.37999 -13.18709 -13.15327 -13.10368 -12.59361 -12.51600 -12.05470 -11.90274 -11.80812 -11.65575 -11.53411 -10.96928 -10.90064 -10.65656 -10.60133 -10.43352 -10.32429 -10.27328 -10.18281 -10.14679 -9.80491 -9.58191 -9.49789 -8.89496 -8.35821 -7.26159 -5.77126 -3.12356 1.12822 1.71978 2.12273 2.49690 2.65676 3.37962 3.41373 3.45766 3.82345 3.85624 3.92582 4.07587 4.24460 4.45193 4.53658 4.59439 4.60590 4.71507 4.75756 5.02498 5.05145 5.11694 5.13899 5.17856 5.30496 5.43443 5.52472 5.53566 5.62554 5.66067 5.73038 5.75076 5.91474 5.93018 5.93651 6.01671 6.14517 6.19990 6.26508 6.36214 6.53655 6.74897 6.93061 6.97874 7.09313 7.14292 7.58923 7.69534 7.99317 8.42256 9.21090 9.93890 10.14194 11.41292 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033247 B = 0.001501 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.980518 B =18648.722475 C =19072.341594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.748 5.748 10 C 0.182 3.818 11 C -0.125 4.125 12 C 0.064 3.936 13 N -0.533 5.533 14 C 0.045 3.955 15 C 0.113 3.887 16 N -0.726 5.726 17 C 0.519 3.481 18 O -0.537 6.537 19 C -0.152 4.152 20 C 0.145 3.855 21 N -0.380 5.380 22 C 0.257 3.743 23 N -0.549 5.549 24 C 0.198 3.802 25 N -0.321 5.321 26 C 0.049 3.951 27 C -0.132 4.132 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.401 0.599 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.220 0.780 45 H 0.217 0.783 46 H 0.075 0.925 47 H 0.031 0.969 48 H 0.070 0.930 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.273 -22.708 -6.041 33.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.390 5.390 10 C 0.072 3.928 11 C -0.163 4.163 12 C -0.064 4.064 13 N -0.258 5.258 14 C -0.083 4.083 15 C -0.011 4.011 16 N -0.378 5.378 17 C 0.304 3.696 18 O -0.414 6.414 19 C -0.193 4.193 20 C 0.023 3.977 21 N -0.171 5.171 22 C -0.040 4.040 23 N -0.276 5.276 24 C -0.104 4.104 25 N -0.149 5.149 26 C -0.079 4.079 27 C -0.173 4.173 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.236 0.764 45 H 0.233 0.767 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.088 0.912 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.176 -21.801 -6.802 32.537 hybrid contribution 0.169 0.491 0.833 0.981 sum 23.345 -21.310 -5.970 32.167 Atomic orbital electron populations 1.69706 1.05125 1.25797 1.57636 1.24669 0.95220 0.97211 1.02058 0.86540 0.79176 0.84955 0.77795 1.21093 1.21813 1.20324 1.19075 0.80645 0.94645 1.42922 0.89320 1.42775 1.03956 1.02027 1.90267 1.20208 0.90215 0.89132 0.93196 1.21900 0.96692 0.96409 1.01346 1.22040 0.99854 0.97092 0.87392 1.61998 1.13688 1.31459 1.18667 1.22217 0.98975 0.92093 0.95028 1.21607 0.94976 0.86710 0.97765 1.45922 1.47981 1.30138 1.13793 1.20256 0.82260 0.84275 0.82814 1.90774 1.45062 1.68523 1.37040 1.21863 1.02343 0.96788 0.98323 1.21556 0.93502 0.85102 0.97548 1.50623 1.07184 1.10286 1.49028 1.26162 1.00541 0.81369 0.95879 1.70580 0.98617 1.33952 1.24447 1.26050 0.99803 0.87608 0.96983 1.78033 0.90389 1.21444 1.24989 1.22317 0.88124 0.98407 0.99039 1.22281 0.98991 0.95346 1.00680 0.93099 0.80626 0.93214 0.91353 0.91389 0.94800 0.91124 0.94418 0.90264 0.90148 0.90559 0.76464 0.88165 0.87229 0.88139 0.86931 0.76358 0.76658 0.90699 0.95038 0.91162 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.12 27.73 -169.99 -4.71 17.41 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.80 10.42 -15.06 -0.16 -6.96 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -17.51 4.93 -53.31 -0.26 -17.78 16 10 C 0.18 3.41 2.84 -67.81 -0.19 3.22 16 11 C -0.12 -1.89 5.57 -26.65 -0.15 -2.04 16 12 C 0.06 0.77 5.42 -3.83 -0.02 0.75 16 13 N -0.53 -6.31 4.81 -234.68 -1.13 -7.44 16 14 C 0.05 0.39 5.39 -3.83 -0.02 0.37 16 15 C 0.11 0.99 4.92 -4.04 -0.02 0.97 16 16 N -0.73 -4.72 5.56 -60.29 -0.33 -5.06 16 17 C 0.52 3.94 7.83 -10.98 -0.09 3.86 16 18 O -0.54 -6.23 15.98 5.56 0.09 -6.14 16 19 C -0.15 -0.71 5.91 -27.88 -0.16 -0.88 16 20 C 0.15 0.74 5.84 -4.04 -0.02 0.71 16 21 N -0.38 -2.45 3.69 -62.63 -0.23 -2.68 16 22 C 0.26 1.49 12.63 -90.65 -1.14 0.35 16 23 N -0.55 -4.44 11.19 -15.83 -0.18 -4.62 16 24 C 0.20 1.45 13.03 -91.81 -1.20 0.25 16 25 N -0.32 -2.63 12.56 29.29 0.37 -2.26 16 26 C 0.05 0.65 4.85 -3.84 -0.02 0.64 16 27 C -0.13 -2.26 5.68 -26.65 -0.15 -2.41 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.36 8.36 5.66 -40.82 -0.23 8.13 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.78 6.21 -51.93 -0.32 0.46 16 39 H 0.40 1.49 8.47 -40.82 -0.35 1.14 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.11 0.40 8.04 -51.93 -0.42 -0.01 16 44 H 0.22 0.34 8.06 -52.49 -0.42 -0.08 16 45 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.07 0.93 5.81 -51.93 -0.30 0.63 16 47 H 0.03 0.42 8.14 -51.92 -0.42 -0.01 16 48 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -36.38 397.47 -11.03 -47.41 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.96 Total: 4.85 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.44 Total: -1.15 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.99 Total: -68.38 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: 0.09 Total: -6.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.38 -11.03 -47.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733577218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.632 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds