Wall clock time and date at job start Tue Mar 31 2020 19:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47102 * 270.00281 * 3 2 1 5 5 H 1.48504 * 109.47006 * 30.00521 * 3 2 1 6 6 H 1.48506 * 109.47130 * 150.00218 * 3 2 1 7 7 C 1.38814 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00372 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99799 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00059 * 179.97438 * 9 7 2 11 11 C 1.53111 * 109.52294 * 204.99773 * 10 9 7 12 12 C 1.53041 * 109.27651 * 182.37804 * 11 10 9 13 13 N 1.46852 * 109.52502 * 59.18106 * 12 11 10 14 14 C 1.46894 * 111.00069 * 174.15949 * 13 12 11 15 15 C 1.52999 * 109.46966 * 169.99930 * 14 13 12 16 16 N 1.46506 * 109.46951 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99507 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00438 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99537 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46982 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47084 * 179.97438 * 20 19 17 22 22 C 1.34429 * 126.81895 * 124.99739 * 21 20 19 23 23 N 1.30837 * 108.07952 * 180.02562 * 22 21 20 24 24 C 1.33246 * 109.82318 * 359.97438 * 23 22 21 25 25 N 1.30712 * 108.94935 * 0.27015 * 24 23 22 26 26 C 1.46841 * 111.19600 * 298.26141 * 13 12 11 27 27 C 1.53034 * 109.52659 * 61.73676 * 26 13 12 28 28 H 0.97000 * 119.99312 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00213 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.52104 * 325.13252 * 10 9 7 31 31 H 1.09000 * 109.50719 * 62.43872 * 11 10 9 32 32 H 1.08997 * 109.50656 * 302.31751 * 11 10 9 33 33 H 1.08997 * 109.46350 * 299.16215 * 12 11 10 34 34 H 1.09000 * 109.45252 * 179.19010 * 12 11 10 35 35 H 1.09002 * 109.47099 * 49.99848 * 14 13 12 36 36 H 1.08995 * 109.47218 * 290.00263 * 14 13 12 37 37 H 1.08993 * 109.47011 * 60.00003 * 15 14 13 38 38 H 1.08996 * 109.46981 * 299.99909 * 15 14 13 39 39 H 0.96992 * 119.99953 * 359.97438 * 16 15 14 40 40 H 1.09002 * 109.47233 * 59.99445 * 19 17 16 41 41 H 1.08996 * 109.47047 * 299.99315 * 19 17 16 42 42 H 1.09002 * 109.47279 * 59.99854 * 20 19 17 43 43 H 1.08995 * 109.47424 * 300.00033 * 20 19 17 44 44 H 1.08000 * 125.96340 * 359.97438 * 22 21 20 45 45 H 1.08002 * 125.52127 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46371 * 181.75658 * 26 13 12 47 47 H 1.09009 * 109.46065 * 301.72557 * 26 13 12 48 48 H 1.09010 * 109.50415 * 180.88215 * 27 26 13 49 49 H 1.09001 * 109.50188 * 60.76637 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.5009 -2.2601 0.6082 12 6 6.2825 -3.5745 0.5512 13 7 6.4024 -4.0142 -0.8448 14 6 7.2645 -5.1988 -0.9515 15 6 7.1681 -5.7739 -2.3660 16 7 8.0274 -6.9558 -2.4722 17 6 8.1029 -7.6315 -3.6358 18 8 7.4593 -7.2616 -4.5949 19 6 8.9873 -8.8469 -3.7453 20 6 8.8908 -9.4221 -5.1597 21 7 9.7510 -10.6032 -5.2663 22 6 9.3833 -11.8347 -5.6603 23 7 10.4390 -12.6064 -5.6189 24 6 11.4946 -11.9062 -5.2057 25 7 11.1224 -10.6752 -4.9719 26 6 5.0828 -4.2686 -1.4365 27 6 4.2653 -2.9749 -1.4389 28 1 -0.4849 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.5645 -3.2078 0.5866 31 1 5.3987 -1.9421 1.6458 32 1 6.0337 -1.4951 0.0434 33 1 5.7563 -4.3353 1.1277 34 1 7.2770 -3.4240 0.9712 35 1 6.9406 -5.9499 -0.2310 36 1 8.2966 -4.9170 -0.7433 37 1 7.4919 -5.0229 -3.0864 38 1 6.1359 -6.0558 -2.5740 39 1 8.5424 -7.2514 -1.7053 40 1 8.6633 -9.5981 -3.0250 41 1 10.0194 -8.5651 -3.5369 42 1 9.2146 -8.6710 -5.8803 43 1 7.8587 -9.7039 -5.3677 44 1 8.3895 -12.1350 -5.9582 45 1 12.4946 -12.2941 -5.0795 46 1 5.2058 -4.6223 -2.4601 47 1 4.5620 -5.0261 -0.8507 48 1 3.2801 -3.1676 -1.8638 49 1 4.7787 -2.2211 -2.0359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733577218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:52 Heat of formation + Delta-G solvation = 48.773886 kcal Electronic energy + Delta-G solvation = -27770.394326 eV Core-core repulsion = 23768.755521 eV Total energy + Delta-G solvation = -4001.638805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.98908 -40.96352 -40.11972 -37.29323 -35.96998 -35.67294 -34.08967 -32.34676 -32.16710 -31.76590 -31.49811 -29.09213 -26.38182 -25.49268 -24.59678 -23.35725 -22.91650 -22.55877 -22.17244 -21.35442 -20.91715 -19.52245 -18.75329 -17.59353 -17.54025 -17.09164 -16.80981 -16.61557 -16.30160 -16.00945 -15.77968 -15.64332 -15.51763 -15.06432 -14.91800 -14.86228 -14.70110 -14.41936 -14.24122 -14.05066 -13.59381 -13.40236 -13.08359 -13.04342 -12.94487 -12.71721 -12.51633 -12.30337 -12.26283 -12.08096 -11.86567 -11.81315 -11.64266 -11.23835 -11.18234 -10.97039 -10.89134 -10.79470 -10.65145 -10.15456 -9.32425 -9.25328 -8.02595 -5.35497 0.68107 1.29402 1.37699 1.41175 1.48425 1.53361 2.01469 2.09001 2.48592 3.01825 3.28856 3.46360 3.54974 3.55265 3.62898 3.75331 3.85682 3.98185 4.05698 4.13910 4.16491 4.20511 4.28271 4.34018 4.35761 4.49261 4.53582 4.66016 4.67727 4.73016 4.77237 4.84884 4.90817 4.94523 4.97551 5.09508 5.17498 5.28177 5.35630 5.39312 5.47791 5.54049 5.76332 5.87581 6.07965 6.14489 6.22079 6.45248 7.08245 7.12477 7.15784 7.85245 8.04592 9.19104 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033247 B = 0.001501 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.980518 B =18648.722475 C =19072.341594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.250 1.250 7 C -0.229 4.229 8 H 0.053 0.947 9 N -0.752 5.752 10 C 0.174 3.826 11 C -0.117 4.117 12 C 0.070 3.930 13 N -0.542 5.542 14 C 0.052 3.948 15 C 0.119 3.881 16 N -0.714 5.714 17 C 0.519 3.481 18 O -0.581 6.581 19 C -0.137 4.137 20 C 0.145 3.855 21 N -0.383 5.383 22 C 0.261 3.739 23 N -0.580 5.580 24 C 0.193 3.807 25 N -0.349 5.349 26 C 0.061 3.939 27 C -0.126 4.126 28 H 0.257 0.743 29 H 0.365 0.635 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.418 0.582 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.256 0.744 45 H 0.239 0.761 46 H 0.083 0.917 47 H 0.033 0.967 48 H 0.040 0.960 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.308 -23.550 -5.286 35.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.174 1.174 7 C -0.360 4.360 8 H 0.071 0.929 9 N -0.395 5.395 10 C 0.066 3.934 11 C -0.155 4.155 12 C -0.058 4.058 13 N -0.268 5.268 14 C -0.075 4.075 15 C -0.005 4.005 16 N -0.367 5.367 17 C 0.306 3.694 18 O -0.461 6.461 19 C -0.178 4.178 20 C 0.023 3.977 21 N -0.173 5.173 22 C -0.035 4.035 23 N -0.308 5.308 24 C -0.110 4.110 25 N -0.177 5.177 26 C -0.067 4.067 27 C -0.166 4.166 28 H 0.066 0.934 29 H 0.198 0.802 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.147 0.853 44 H 0.272 0.728 45 H 0.255 0.745 46 H 0.101 0.899 47 H 0.051 0.949 48 H 0.059 0.941 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 26.293 -22.685 -6.013 35.243 hybrid contribution -0.793 0.629 0.570 1.162 sum 25.500 -22.056 -5.443 34.152 Atomic orbital electron populations 1.69892 1.07171 1.26604 1.59947 1.25501 0.96096 1.01251 1.02784 0.85389 0.78710 0.79580 0.77966 1.20765 1.22283 1.17433 1.19025 0.82755 0.93270 1.40955 0.92853 1.42811 1.02372 1.04023 1.90276 1.20475 0.91879 0.86841 0.94227 1.21804 0.94264 0.98525 1.00950 1.22015 1.00927 0.95259 0.87611 1.61940 1.12717 1.33493 1.18614 1.22236 0.99258 0.91163 0.94869 1.21378 0.94453 0.87033 0.97685 1.45781 1.47461 1.29200 1.14265 1.20712 0.81789 0.84640 0.82264 1.90762 1.46979 1.69791 1.38558 1.21749 1.01718 0.95719 0.98577 1.21609 0.94007 0.84608 0.97500 1.50665 1.06786 1.10784 1.49088 1.26900 1.01457 0.80787 0.94354 1.70599 0.99498 1.35019 1.25711 1.26569 1.00728 0.87392 0.96283 1.77974 0.91512 1.22080 1.26183 1.22104 0.88728 0.95895 0.99989 1.22093 0.98225 0.97283 0.98995 0.93428 0.80195 0.94752 0.91099 0.91386 0.94346 0.88083 0.92802 0.88085 0.91970 0.92156 0.74475 0.86270 0.86844 0.89437 0.85344 0.72827 0.74509 0.89866 0.94889 0.94106 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.82 13.97 21.65 0.30 -63.51 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.96 45.93 27.73 68.60 1.90 47.83 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 7 C -0.23 -13.17 10.42 84.03 0.88 -12.30 16 8 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 9 N -0.75 -35.21 4.93 -322.56 -1.59 -36.80 16 10 C 0.17 6.47 2.84 45.07 0.13 6.59 16 11 C -0.12 -3.28 5.57 30.65 0.17 -3.11 16 12 C 0.07 1.44 5.42 86.33 0.47 1.91 16 13 N -0.54 -11.33 4.81 -896.38 -4.31 -15.64 16 14 C 0.05 0.71 5.39 86.30 0.46 1.17 16 15 C 0.12 1.86 4.92 86.38 0.43 2.28 16 16 N -0.71 -7.54 5.56 -463.05 -2.57 -10.12 16 17 C 0.52 7.04 7.83 87.66 0.69 7.72 16 18 O -0.58 -13.13 15.98 -3.03 -0.05 -13.18 16 19 C -0.14 -1.00 5.91 29.85 0.18 -0.82 16 20 C 0.14 1.26 5.84 86.38 0.50 1.77 16 21 N -0.38 -4.37 3.69 -352.06 -1.30 -5.67 16 22 C 0.26 2.56 12.63 180.36 2.28 4.84 16 23 N -0.58 -8.69 11.19 -203.99 -2.28 -10.98 16 24 C 0.19 2.62 13.03 180.76 2.36 4.98 16 25 N -0.35 -5.36 12.56 -61.24 -0.77 -6.13 16 26 C 0.06 1.56 4.85 86.33 0.42 1.98 16 27 C -0.13 -4.32 5.68 30.65 0.17 -4.14 16 28 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.36 16.41 5.66 -92.71 -0.53 15.88 16 30 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.16 6.21 -2.39 -0.01 1.14 16 39 H 0.42 1.65 8.47 -92.71 -0.79 0.87 16 40 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 43 H 0.13 0.70 8.04 -2.39 -0.02 0.68 16 44 H 0.26 0.13 8.06 -2.91 -0.02 0.11 16 45 H 0.24 1.61 8.06 -2.91 -0.02 1.58 16 46 H 0.08 2.01 5.81 -2.39 -0.01 2.00 16 47 H 0.03 0.83 8.14 -2.38 -0.02 0.82 16 48 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 49 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -81.94 397.47 -1.48 -83.43 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.41 Total: 21.28 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 9.59 Total: 9.47 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -12.52 Total: -148.84 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.05 Total: -13.18 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.90 Total: 47.83 kcal Total: -81.94 -1.48 -83.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733577218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.201 kcal (2) G-P(sol) polarization free energy of solvation -81.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds