Wall clock time and date at job start Tue Mar 31 2020 21:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47551 * 2 1 4 4 N 1.46511 * 109.47059 * 240.00737 * 2 1 3 5 5 C 1.34768 * 119.99891 * 85.00028 * 4 2 1 6 6 O 1.21281 * 120.00253 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99702 * 180.02562 * 5 4 2 8 8 C 1.50707 * 109.46972 * 179.97438 * 7 5 4 9 9 N 1.33311 * 126.55084 * 90.02467 * 8 7 5 10 10 N 1.28995 * 107.35761 * 179.97438 * 9 8 7 11 11 N 1.28788 * 108.72197 * 359.97438 * 10 9 8 12 12 C 1.46495 * 125.44672 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47379 * 359.97438 * 12 11 10 14 14 C 1.52999 * 109.47320 * 119.97604 * 12 11 10 15 15 C 1.53007 * 109.47299 * 239.97441 * 12 11 10 16 16 N 1.28879 * 109.10025 * 359.73019 * 11 10 9 17 17 C 1.53001 * 109.47259 * 120.00675 * 2 1 3 18 18 C 1.53494 * 114.20552 * 299.99756 * 17 2 1 19 19 N 1.47063 * 87.98461 * 87.71556 * 18 17 2 20 20 C 1.36936 * 136.06059 * 207.08134 * 19 18 17 21 21 H 1.08000 * 119.99652 * 6.86761 * 20 19 18 22 22 C 1.38812 * 120.00196 * 187.14122 * 20 19 18 23 23 N 1.31615 * 120.00243 * 6.17983 * 22 20 19 24 24 Si 1.86810 * 119.99756 * 186.18640 * 22 20 19 25 25 H 1.48490 * 109.47173 * 94.73180 * 24 22 20 26 26 H 1.48499 * 109.46525 * 214.73283 * 24 22 20 27 27 H 1.48496 * 109.47050 * 334.73091 * 24 22 20 28 28 C 1.47069 * 87.88601 * 27.34321 * 19 18 17 29 29 H 1.09000 * 109.47331 * 59.99341 * 1 2 3 30 30 H 1.09001 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46876 * 299.99700 * 1 2 3 32 32 H 0.96998 * 119.99710 * 265.00266 * 4 2 1 33 33 H 1.08994 * 109.46945 * 299.99431 * 7 5 4 34 34 H 1.08993 * 109.47390 * 59.99550 * 7 5 4 35 35 H 1.08994 * 109.47376 * 59.99859 * 13 12 11 36 36 H 1.08995 * 109.47692 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.47321 * 300.00269 * 13 12 11 38 38 H 1.09000 * 109.47097 * 59.99508 * 14 12 11 39 39 H 1.08999 * 109.47145 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.46992 * 299.99693 * 14 12 11 41 41 H 1.09005 * 109.46570 * 59.99634 * 15 12 11 42 42 H 1.08995 * 109.47393 * 179.97438 * 15 12 11 43 43 H 1.09000 * 109.46777 * 300.00284 * 15 12 11 44 44 H 1.09008 * 113.28244 * 166.92779 * 17 2 1 45 45 H 1.08998 * 113.46488 * 332.93928 * 18 17 2 46 46 H 1.08996 * 113.51970 * 202.50350 * 18 17 2 47 47 H 0.97001 * 119.99729 * 180.02562 * 23 22 20 48 48 H 1.08996 * 113.47039 * 87.43583 * 28 19 18 49 49 H 1.08999 * 113.46535 * 217.87990 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1964 5 6 2.1470 -0.0180 -2.3571 6 8 1.8582 1.1586 -2.4116 7 6 2.6488 -0.7285 -3.5878 8 6 2.6990 0.2399 -4.7415 9 7 3.7316 1.0083 -5.0886 10 7 3.3740 1.6885 -6.1247 11 7 2.1640 1.3705 -6.4305 12 6 1.3966 1.9245 -7.5487 13 6 2.2548 2.9436 -8.3009 14 6 0.9939 0.7959 -8.4998 15 6 0.1395 2.6130 -7.0130 16 7 1.7385 0.4822 -5.5993 17 6 2.0400 -0.7214 1.2492 18 6 1.5899 -0.0849 2.5714 19 7 0.3768 -0.9130 2.4970 20 6 -0.9102 -0.8199 2.9554 21 1 -1.2493 0.0880 3.4320 22 6 -1.7772 -1.8945 2.8125 23 7 -1.3315 -3.0427 2.3486 24 14 -3.5769 -1.7108 3.2786 25 1 -4.3677 -1.3612 2.0714 26 1 -4.0750 -2.9908 3.8431 27 1 -3.7184 -0.6345 4.2919 28 6 1.1560 -1.8882 1.7194 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1529 33 1 3.6479 -1.1210 -3.3988 34 1 1.9760 -1.5502 -3.8327 35 1 3.1503 2.4532 -8.6825 36 1 1.6838 3.3562 -9.1326 37 1 2.5418 3.7477 -7.6233 38 1 0.3825 0.0699 -7.9639 39 1 0.4226 1.2081 -9.3315 40 1 1.8894 0.3055 -8.8815 41 1 0.4265 3.4171 -6.3353 42 1 -0.4312 3.0256 -7.8449 43 1 -0.4718 1.8870 -6.4771 44 1 3.1032 -0.9581 1.2061 45 1 1.3912 0.9840 2.4930 46 1 2.2338 -0.3331 3.4150 47 1 -1.9375 -3.7934 2.2485 48 1 1.6861 -2.6125 2.3379 49 1 0.5877 -2.3556 0.9153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734112538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:21 Heat of formation + Delta-G solvation = 149.529885 kcal Electronic energy + Delta-G solvation = -29492.733314 eV Core-core repulsion = 25495.463617 eV Total energy + Delta-G solvation = -3997.269697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.37951 -39.81784 -38.47542 -37.86534 -34.43291 -33.60421 -33.25089 -32.18850 -30.44173 -28.75194 -28.00631 -27.83623 -27.66273 -24.71597 -24.68068 -24.17930 -22.83965 -21.42910 -20.79991 -20.08359 -18.62254 -17.47890 -17.27391 -16.78792 -16.54068 -15.82599 -15.27070 -14.94931 -14.76765 -14.66145 -14.49801 -14.20038 -13.86389 -13.79678 -13.40929 -13.34375 -12.94638 -12.81995 -12.61153 -12.59477 -12.31254 -12.14419 -12.02453 -11.92253 -11.72237 -11.48443 -11.19407 -11.09273 -10.97037 -10.93449 -10.85912 -10.78235 -10.58369 -10.34878 -10.29800 -9.87544 -9.70236 -9.60282 -9.16093 -8.72327 -8.65324 -6.82591 -5.79371 -3.09149 1.22893 1.72771 2.11905 2.82359 3.38153 3.39045 3.44534 3.45617 3.71708 3.99061 4.07986 4.18436 4.46065 4.46163 4.87303 4.93525 4.95778 5.02995 5.10995 5.11854 5.17895 5.20096 5.29650 5.31628 5.35984 5.40275 5.47342 5.54436 5.60271 5.64557 5.70995 5.86377 5.95653 6.10290 6.18102 6.32686 6.43571 6.50648 6.65538 6.73002 6.75492 7.02642 7.18211 7.27600 7.46262 7.54944 7.79555 7.96372 8.37560 8.45166 9.03379 9.69831 10.64918 11.39177 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.002374 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.649471 B =11789.951086 C =12658.489873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.177 3.823 3 H 0.077 0.923 4 N -0.715 5.715 5 C 0.520 3.480 6 O -0.538 6.538 7 C -0.046 4.046 8 C 0.189 3.811 9 N -0.278 5.278 10 N -0.065 5.065 11 N -0.131 5.131 12 C 0.179 3.821 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.160 4.160 16 N -0.294 5.294 17 C -0.162 4.162 18 C 0.125 3.875 19 N -0.604 5.604 20 C -0.213 4.213 21 H 0.080 0.920 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.907 3.093 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.166 3.834 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.400 0.600 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.035 0.965 47 H 0.253 0.747 48 H 0.027 0.973 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 5.791 -22.182 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 H 0.095 0.905 4 N -0.366 5.366 5 C 0.303 3.697 6 O -0.415 6.415 7 C -0.089 4.089 8 C -0.094 4.094 9 N -0.149 5.149 10 N -0.058 5.058 11 N -0.045 5.045 12 C 0.098 3.902 13 C -0.210 4.210 14 C -0.216 4.216 15 C -0.218 4.218 16 N -0.144 5.144 17 C -0.182 4.182 18 C -0.002 4.002 19 N -0.330 5.330 20 C -0.341 4.341 21 H 0.098 0.902 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.040 3.960 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.234 0.766 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.636 7.008 -22.572 24.838 hybrid contribution -1.050 -0.962 0.862 1.665 sum 6.586 6.045 -21.709 23.478 Atomic orbital electron populations 1.22137 0.93275 1.03738 1.01148 1.20571 0.95433 0.95278 0.81386 0.90539 1.46072 1.66706 1.14081 1.09719 1.20015 0.78186 0.87321 0.84132 1.90720 1.49948 1.16023 1.84805 1.19902 1.05810 0.95543 0.87692 1.24610 0.86864 0.99946 0.97977 1.75782 1.25287 1.07334 1.06447 1.78868 0.97560 1.19096 1.10236 1.50394 1.09055 1.24063 1.20954 1.21356 0.91692 0.95124 0.82011 1.22079 1.00098 0.98223 1.00619 1.22224 1.02994 0.97539 0.98849 1.22239 0.95221 1.01580 1.02762 1.74555 1.26523 1.09459 1.03876 1.23377 0.98513 1.01525 0.94740 1.22355 0.89048 0.95772 0.92998 1.45764 1.04281 1.20625 1.62320 1.18883 0.83736 0.98416 1.33023 0.90247 1.24765 0.98248 0.95242 1.01933 1.69834 1.33848 1.01478 1.51381 0.86177 0.85170 0.76863 0.78050 1.21571 1.21801 1.20633 1.22074 0.89351 0.90585 0.93991 0.95304 0.91155 0.89560 0.76577 0.85729 0.85972 0.90673 0.89346 0.90577 0.90355 0.89252 0.91486 0.91265 0.89296 0.90295 0.91041 0.94072 0.94796 0.93741 0.95484 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.07 37.16 0.30 -2.67 16 2 C 0.18 3.09 2.76 -67.93 -0.19 2.90 16 3 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.72 -10.32 5.08 -53.80 -0.27 -10.59 16 5 C 0.52 7.92 7.79 -10.99 -0.09 7.83 16 6 O -0.54 -10.61 15.70 5.56 0.09 -10.53 16 7 C -0.05 -0.53 6.33 -29.03 -0.18 -0.71 16 8 C 0.19 2.71 6.86 -156.63 -1.07 1.63 16 9 N -0.28 -4.29 12.50 32.45 0.41 -3.89 16 10 N -0.07 -0.92 12.24 60.35 0.74 -0.18 16 11 N -0.13 -1.61 3.73 0.48 0.00 -1.61 16 12 C 0.18 1.43 1.30 -131.82 -0.17 1.26 16 13 C -0.15 -0.90 7.91 37.16 0.29 -0.61 16 14 C -0.16 -0.93 8.66 37.16 0.32 -0.61 16 15 C -0.16 -1.19 8.67 37.16 0.32 -0.87 16 16 N -0.29 -4.10 11.83 32.47 0.38 -3.72 16 17 C -0.16 -2.83 4.24 -89.97 -0.38 -3.21 16 18 C 0.13 2.48 7.85 -8.51 -0.07 2.41 16 19 N -0.60 -14.59 2.17 -184.60 -0.40 -14.99 16 20 C -0.21 -5.73 9.59 -15.06 -0.14 -5.87 16 21 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 23 N -0.92 -26.30 11.82 55.49 0.66 -25.64 16 24 Si 0.91 21.85 29.56 -169.99 -5.02 16.83 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.17 3.60 6.22 -8.37 -0.05 3.55 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.60 6.34 -51.93 -0.33 1.27 16 31 H 0.09 1.95 5.95 -51.93 -0.31 1.64 16 32 H 0.40 4.67 8.60 -40.82 -0.35 4.32 16 33 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.06 1.51 6.21 -51.93 -0.32 1.19 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -35.21 398.73 -6.64 -41.84 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.01 Total: 1.68 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.21 Total: 4.79 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 1.51 Total: -60.63 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.21 -6.64 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734112538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.373 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds