Wall clock time and date at job start Tue Mar 31 2020 21:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47551 * 2 1 4 4 N 1.46511 * 109.47059 * 240.00737 * 2 1 3 5 5 C 1.34768 * 119.99891 * 85.00028 * 4 2 1 6 6 O 1.21281 * 120.00253 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99702 * 180.02562 * 5 4 2 8 8 C 1.50707 * 109.46972 * 179.97438 * 7 5 4 9 9 N 1.33311 * 126.55084 * 90.02467 * 8 7 5 10 10 N 1.28995 * 107.35761 * 179.97438 * 9 8 7 11 11 N 1.28788 * 108.72197 * 359.97438 * 10 9 8 12 12 C 1.46495 * 125.44672 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47379 * 359.97438 * 12 11 10 14 14 C 1.52999 * 109.47320 * 119.97604 * 12 11 10 15 15 C 1.53007 * 109.47299 * 239.97441 * 12 11 10 16 16 N 1.28879 * 109.10025 * 359.73019 * 11 10 9 17 17 C 1.53001 * 109.47259 * 120.00675 * 2 1 3 18 18 C 1.53494 * 114.20552 * 299.99756 * 17 2 1 19 19 N 1.47063 * 87.98461 * 87.71556 * 18 17 2 20 20 C 1.36936 * 136.06059 * 207.08134 * 19 18 17 21 21 H 1.08000 * 119.99652 * 6.86761 * 20 19 18 22 22 C 1.38812 * 120.00196 * 187.14122 * 20 19 18 23 23 N 1.31615 * 120.00243 * 6.17983 * 22 20 19 24 24 Si 1.86810 * 119.99756 * 186.18640 * 22 20 19 25 25 H 1.48490 * 109.47173 * 94.73180 * 24 22 20 26 26 H 1.48499 * 109.46525 * 214.73283 * 24 22 20 27 27 H 1.48496 * 109.47050 * 334.73091 * 24 22 20 28 28 C 1.47069 * 87.88601 * 27.34321 * 19 18 17 29 29 H 1.09000 * 109.47331 * 59.99341 * 1 2 3 30 30 H 1.09001 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46876 * 299.99700 * 1 2 3 32 32 H 0.96998 * 119.99710 * 265.00266 * 4 2 1 33 33 H 1.08994 * 109.46945 * 299.99431 * 7 5 4 34 34 H 1.08993 * 109.47390 * 59.99550 * 7 5 4 35 35 H 1.08994 * 109.47376 * 59.99859 * 13 12 11 36 36 H 1.08995 * 109.47692 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.47321 * 300.00269 * 13 12 11 38 38 H 1.09000 * 109.47097 * 59.99508 * 14 12 11 39 39 H 1.08999 * 109.47145 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.46992 * 299.99693 * 14 12 11 41 41 H 1.09005 * 109.46570 * 59.99634 * 15 12 11 42 42 H 1.08995 * 109.47393 * 179.97438 * 15 12 11 43 43 H 1.09000 * 109.46777 * 300.00284 * 15 12 11 44 44 H 1.09008 * 113.28244 * 166.92779 * 17 2 1 45 45 H 1.08998 * 113.46488 * 332.93928 * 18 17 2 46 46 H 1.08996 * 113.51970 * 202.50350 * 18 17 2 47 47 H 0.97001 * 119.99729 * 180.02562 * 23 22 20 48 48 H 1.08996 * 113.47039 * 87.43583 * 28 19 18 49 49 H 1.08999 * 113.46535 * 217.87990 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1964 5 6 2.1470 -0.0180 -2.3571 6 8 1.8582 1.1586 -2.4116 7 6 2.6488 -0.7285 -3.5878 8 6 2.6990 0.2399 -4.7415 9 7 3.7316 1.0083 -5.0886 10 7 3.3740 1.6885 -6.1247 11 7 2.1640 1.3705 -6.4305 12 6 1.3966 1.9245 -7.5487 13 6 2.2548 2.9436 -8.3009 14 6 0.9939 0.7959 -8.4998 15 6 0.1395 2.6130 -7.0130 16 7 1.7385 0.4822 -5.5993 17 6 2.0400 -0.7214 1.2492 18 6 1.5899 -0.0849 2.5714 19 7 0.3768 -0.9130 2.4970 20 6 -0.9102 -0.8199 2.9554 21 1 -1.2493 0.0880 3.4320 22 6 -1.7772 -1.8945 2.8125 23 7 -1.3315 -3.0427 2.3486 24 14 -3.5769 -1.7108 3.2786 25 1 -4.3677 -1.3612 2.0714 26 1 -4.0750 -2.9908 3.8431 27 1 -3.7184 -0.6345 4.2919 28 6 1.1560 -1.8882 1.7194 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1529 33 1 3.6479 -1.1210 -3.3988 34 1 1.9760 -1.5502 -3.8327 35 1 3.1503 2.4532 -8.6825 36 1 1.6838 3.3562 -9.1326 37 1 2.5418 3.7477 -7.6233 38 1 0.3825 0.0699 -7.9639 39 1 0.4226 1.2081 -9.3315 40 1 1.8894 0.3055 -8.8815 41 1 0.4265 3.4171 -6.3353 42 1 -0.4312 3.0256 -7.8449 43 1 -0.4718 1.8870 -6.4771 44 1 3.1032 -0.9581 1.2061 45 1 1.3912 0.9840 2.4930 46 1 2.2338 -0.3331 3.4150 47 1 -1.9375 -3.7934 2.2485 48 1 1.6861 -2.6125 2.3379 49 1 0.5877 -2.3556 0.9153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734112538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:20 Heat of formation + Delta-G solvation = 125.171723 kcal Electronic energy + Delta-G solvation = -29493.789563 eV Core-core repulsion = 25495.463617 eV Total energy + Delta-G solvation = -3998.325946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.37110 -41.22763 -39.96653 -38.58107 -35.89015 -34.64052 -34.22414 -34.09734 -31.76383 -29.97447 -29.51232 -28.53164 -28.38644 -26.40372 -25.94899 -25.59192 -24.09762 -22.94331 -21.65556 -21.30832 -20.16407 -18.71168 -18.49774 -18.00785 -17.68721 -17.17755 -16.87047 -16.39812 -16.19825 -15.70843 -15.50306 -15.20566 -15.14847 -14.94216 -14.54912 -14.47536 -14.14926 -13.90274 -13.52839 -13.44395 -13.24366 -13.22886 -12.99534 -12.90960 -12.86125 -12.82061 -12.75371 -12.58067 -12.55815 -12.37900 -12.15956 -12.06836 -11.93288 -11.84846 -11.65357 -11.48191 -11.35204 -10.97330 -10.80355 -10.66411 -10.02803 -8.77599 -7.87400 -5.15626 0.23284 0.93820 1.06973 1.45714 1.46977 1.54368 1.63447 2.22838 2.49968 2.84179 3.17013 3.36513 3.51796 3.56720 3.60139 3.67642 3.71985 3.83241 3.96491 4.24150 4.38479 4.42468 4.45906 4.51666 4.55488 4.56277 4.59869 4.70795 4.71478 4.72710 4.73787 4.79754 4.87789 4.90778 5.01407 5.05054 5.10408 5.11601 5.15179 5.22220 5.30506 5.36484 5.52924 5.56910 5.67098 5.75345 5.99119 6.61413 6.98232 7.28027 7.35101 7.66207 8.68514 9.31193 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.002374 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.649471 B =11789.951086 C =12658.489873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.186 3.814 3 H 0.073 0.927 4 N -0.704 5.704 5 C 0.521 3.479 6 O -0.586 6.586 7 C -0.039 4.039 8 C 0.176 3.824 9 N -0.306 5.306 10 N -0.078 5.078 11 N -0.120 5.120 12 C 0.162 3.838 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.156 4.156 16 N -0.308 5.308 17 C -0.127 4.127 18 C 0.121 3.879 19 N -0.631 5.631 20 C -0.213 4.213 21 H 0.077 0.923 22 C -0.059 4.059 23 N -0.946 5.946 24 Si 0.963 3.037 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.271 1.271 28 C 0.166 3.834 29 H 0.021 0.979 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.417 0.583 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.127 0.873 43 H 0.059 0.941 44 H 0.113 0.887 45 H 0.046 0.954 46 H 0.050 0.950 47 H 0.246 0.754 48 H 0.019 0.981 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 6.019 -23.777 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.091 0.909 4 N -0.355 5.355 5 C 0.307 3.693 6 O -0.466 6.466 7 C -0.081 4.081 8 C -0.107 4.107 9 N -0.176 5.176 10 N -0.070 5.070 11 N -0.036 5.036 12 C 0.083 3.917 13 C -0.206 4.206 14 C -0.210 4.210 15 C -0.215 4.215 16 N -0.159 5.159 17 C -0.146 4.146 18 C -0.005 4.005 19 N -0.358 5.358 20 C -0.342 4.342 21 H 0.095 0.905 22 C -0.252 4.252 23 N -0.596 5.596 24 Si 0.792 3.208 25 H -0.219 1.219 26 H -0.223 1.223 27 H -0.196 1.196 28 C 0.041 3.959 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.145 0.855 43 H 0.079 0.921 44 H 0.130 0.870 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.437 7.232 -24.166 26.599 hybrid contribution -1.306 -0.934 1.301 2.066 sum 7.130 6.299 -22.866 24.766 Atomic orbital electron populations 1.21899 0.95718 1.01393 0.99534 1.20263 0.93218 0.95568 0.82784 0.90908 1.45859 1.66108 1.14805 1.08738 1.20628 0.76978 0.86768 0.84954 1.90706 1.52042 1.18339 1.85562 1.20047 1.08317 0.95020 0.84744 1.25109 0.86637 1.00304 0.98696 1.75730 1.26365 1.08212 1.07280 1.78781 0.98484 1.19366 1.10355 1.50929 1.08699 1.22988 1.20996 1.21983 0.91852 0.96416 0.81473 1.22126 1.00264 0.97124 1.01070 1.22241 1.03076 0.96597 0.99070 1.22263 0.95082 1.00432 1.03677 1.74527 1.26811 1.10177 1.04403 1.23121 0.99857 0.98237 0.93409 1.22552 0.87491 0.95726 0.94691 1.46044 1.04772 1.22276 1.62674 1.19123 0.85422 0.98047 1.31596 0.90533 1.25409 1.01540 0.95289 1.02996 1.69969 1.34548 1.01895 1.53140 0.85286 0.81201 0.76620 0.77651 1.21866 1.22257 1.19637 1.22040 0.89509 0.91303 0.93076 0.96034 0.93674 0.91965 0.74584 0.82227 0.83147 0.90984 0.85703 0.92059 0.91665 0.85763 0.91688 0.93166 0.85487 0.92147 0.86958 0.93547 0.93244 0.94450 0.96282 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.07 71.98 0.58 -4.69 16 2 C 0.19 6.28 2.76 44.99 0.12 6.41 16 3 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 4 N -0.70 -18.99 5.08 -442.52 -2.25 -21.24 16 5 C 0.52 15.15 7.79 87.66 0.68 15.83 16 6 O -0.59 -23.03 15.70 -3.03 -0.05 -23.08 16 7 C -0.04 -0.81 6.33 29.10 0.18 -0.63 16 8 C 0.18 4.89 6.86 138.56 0.95 5.84 16 9 N -0.31 -9.37 12.50 -51.26 -0.64 -10.01 16 10 N -0.08 -2.20 12.24 37.02 0.45 -1.74 16 11 N -0.12 -2.93 3.73 -152.40 -0.57 -3.50 16 12 C 0.16 2.38 1.30 3.60 0.00 2.38 16 13 C -0.15 -1.51 7.91 71.98 0.57 -0.94 16 14 C -0.15 -1.49 8.66 71.98 0.62 -0.87 16 15 C -0.16 -2.17 8.67 71.98 0.62 -1.55 16 16 N -0.31 -8.49 11.83 -51.20 -0.61 -9.10 16 17 C -0.13 -4.16 4.24 -10.37 -0.04 -4.20 16 18 C 0.12 4.61 7.85 83.18 0.65 5.26 16 19 N -0.63 -30.46 2.17 -737.96 -1.60 -32.06 16 20 C -0.21 -11.58 9.59 84.03 0.81 -10.77 16 21 H 0.08 4.08 7.84 -2.91 -0.02 4.06 16 22 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 23 N -0.95 -55.21 11.82 21.65 0.26 -54.96 16 24 Si 0.96 45.59 29.56 68.60 2.03 47.62 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 C 0.17 7.13 6.22 83.27 0.52 7.65 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 2.08 6.34 -2.39 -0.02 2.07 16 31 H 0.06 2.86 5.95 -2.39 -0.01 2.84 16 32 H 0.42 8.61 8.60 -92.71 -0.80 7.81 16 33 H 0.16 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 45 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.04 2.01 6.21 -2.39 -0.01 2.00 16 Total: -1.00 -79.62 398.73 3.93 -75.69 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.16 Total: 15.43 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 6.74 Total: 16.94 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -4.95 Total: -132.60 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -79.62 3.93 -75.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734112538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.862 kcal (2) G-P(sol) polarization free energy of solvation -79.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds