Wall clock time and date at job start Tue Mar 31 2020 19:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00431 * 2 1 4 4 C 1.53002 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47009 * 65.00180 * 4 3 2 6 6 C 1.36942 * 119.99782 * 269.99415 * 5 4 3 7 7 H 1.07999 * 120.00100 * 139.91696 * 6 5 4 8 8 C 1.38810 * 119.99969 * 319.92188 * 6 5 4 9 9 N 1.31620 * 120.00117 * 340.76888 * 8 6 5 10 10 Si 1.86802 * 120.00166 * 160.77291 * 8 6 5 11 11 H 1.48502 * 109.47255 * 89.99372 * 10 8 6 12 12 H 1.48495 * 109.47618 * 209.99781 * 10 8 6 13 13 H 1.48504 * 109.47072 * 330.00051 * 10 8 6 14 14 C 1.46493 * 120.00468 * 90.00103 * 5 4 3 15 15 C 1.52998 * 109.47315 * 264.45111 * 14 5 4 16 16 N 1.46492 * 109.47702 * 179.97438 * 15 14 5 17 17 C 1.34780 * 120.00482 * 179.97438 * 16 15 14 18 18 O 1.21675 * 119.99658 * 4.94499 * 17 16 15 19 19 C 1.46764 * 119.99943 * 184.94427 * 17 16 15 20 20 C 1.36834 * 126.91041 * 186.70019 * 19 17 16 21 21 N 1.33455 * 107.83532 * 179.97438 * 20 19 17 22 22 C 1.30556 * 109.68216 * 359.97438 * 21 20 19 23 23 N 1.34872 * 108.99186 * 0.05883 * 22 21 20 24 24 C 1.46447 * 124.99596 * 179.88710 * 23 22 21 25 25 C 1.53268 * 108.81414 * 342.93903 * 24 23 22 26 26 C 1.53341 * 109.41951 * 50.27803 * 25 24 23 27 27 C 1.51115 * 127.08941 * 180.09706 * 22 21 20 28 28 H 1.09003 * 109.46562 * 59.99936 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47262 * 300.00200 * 1 2 3 31 31 H 1.08998 * 109.46779 * 59.99590 * 3 2 1 32 32 H 1.09002 * 109.46767 * 299.99480 * 3 2 1 33 33 H 1.08998 * 109.47170 * 304.99795 * 4 3 2 34 34 H 1.08994 * 109.46702 * 184.99829 * 4 3 2 35 35 H 0.97006 * 119.99856 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47625 * 144.44592 * 14 5 4 37 37 H 1.09002 * 109.47005 * 24.44676 * 14 5 4 38 38 H 1.08997 * 109.47198 * 59.99219 * 15 14 5 39 39 H 1.09002 * 109.46729 * 299.99734 * 15 14 5 40 40 H 0.97009 * 119.99623 * 359.97438 * 16 15 14 41 41 H 1.08001 * 126.08185 * 0.02562 * 20 19 17 42 42 H 1.08993 * 109.58252 * 102.73725 * 24 23 22 43 43 H 1.09006 * 109.57732 * 223.14446 * 24 23 22 44 44 H 1.08993 * 109.47270 * 170.22776 * 25 24 23 45 45 H 1.09004 * 109.47447 * 290.24110 * 25 24 23 46 46 H 1.09000 * 109.55037 * 170.73307 * 26 25 24 47 47 H 1.08992 * 109.55571 * 50.52783 * 26 25 24 48 48 H 1.08993 * 109.71103 * 283.63054 * 27 22 21 49 49 H 1.09004 * 109.70889 * 44.21720 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.0967 -0.7972 -1.3369 7 1 3.7834 -1.3129 -2.2326 8 6 4.6221 -1.5144 -0.2709 9 7 5.3412 -0.9005 0.6447 10 14 4.3086 -3.3510 -0.1358 11 1 5.3857 -4.0903 -0.8419 12 1 4.2928 -3.7466 1.2954 13 1 2.9980 -3.6762 -0.7537 14 6 4.2864 1.4004 -2.4148 15 6 3.0604 1.4828 -3.3263 16 7 3.3709 2.3194 -4.4881 17 6 2.4343 2.5349 -5.4331 18 8 1.3047 2.1101 -5.2781 19 6 2.7771 3.2819 -6.6490 20 6 1.9175 3.6904 -7.6322 21 7 2.6311 4.3367 -8.5564 22 6 3.8888 4.3562 -8.2067 23 7 4.0270 3.7124 -7.0296 24 6 5.2934 3.5255 -6.3182 25 6 6.4495 3.7803 -7.2916 26 6 6.2277 5.1180 -8.0076 27 6 5.0356 4.9851 -8.9636 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8515 0.5681 0.8409 34 1 3.9786 2.1763 0.0889 35 1 5.7087 -1.4019 1.3895 36 1 5.1195 0.9629 -2.9650 37 1 4.5580 2.4015 -2.0799 38 1 2.2274 1.9203 -2.7762 39 1 2.7888 0.4817 -3.6613 40 1 4.2506 2.7184 -4.5773 41 1 0.8512 3.5208 -7.6557 42 1 5.3533 4.2290 -5.4879 43 1 5.3526 2.5049 -5.9399 44 1 7.3885 3.8154 -6.7393 45 1 6.4899 2.9761 -8.0264 46 1 7.1210 5.3810 -8.5742 47 1 6.0200 5.8953 -7.2724 48 1 5.3099 4.3523 -9.8075 49 1 4.7416 5.9710 -9.3237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734581029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:42 Heat of formation + Delta-G solvation = -0.146910 kcal Electronic energy + Delta-G solvation = -29836.337354 eV Core-core repulsion = 25800.284433 eV Total energy + Delta-G solvation = -4036.052921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.63607 -39.17544 -37.30259 -37.02314 -35.77966 -34.44131 -33.42247 -31.42955 -30.23271 -29.71941 -28.97339 -27.38990 -25.63316 -24.94493 -24.07360 -23.14395 -22.29200 -21.35125 -20.77134 -20.19546 -19.43136 -17.72614 -16.77885 -16.45891 -15.91674 -15.82965 -15.54721 -15.15696 -14.96972 -14.92926 -14.66755 -14.61907 -14.47061 -14.06896 -14.01460 -13.63609 -13.54069 -13.21779 -13.06387 -12.67515 -12.26792 -12.02709 -11.81379 -11.62098 -11.60546 -11.46492 -11.21547 -10.90752 -10.80403 -10.71787 -10.64983 -10.41836 -10.10061 -10.01336 -9.90333 -9.87136 -9.75240 -8.96516 -8.74409 -8.48978 -8.42975 -6.59308 -5.77716 -3.38254 1.24343 2.33267 2.71539 3.26830 3.39681 3.40802 3.48101 3.56054 3.89163 4.05451 4.17010 4.21454 4.51724 4.56873 4.69891 4.71699 4.87867 4.91933 5.13615 5.22483 5.25374 5.33476 5.34810 5.37332 5.49304 5.54369 5.65595 5.73330 5.77804 5.80900 5.88090 5.91116 6.05886 6.15505 6.23712 6.25258 6.43189 6.50541 6.59216 6.61078 6.64907 6.82495 6.88178 7.54666 7.59245 7.82138 7.85555 8.07952 8.27045 8.55654 9.17473 9.79617 10.34846 11.24608 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.002859 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.013635 B = 9792.903511 C =10744.565646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.043 3.957 4 C 0.145 3.855 5 N -0.569 5.569 6 C -0.248 4.248 7 H 0.056 0.944 8 C 0.024 3.976 9 N -0.892 5.892 10 Si 0.900 3.100 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.139 3.861 15 C 0.094 3.906 16 N -0.727 5.727 17 C 0.589 3.411 18 O -0.527 6.527 19 C -0.082 4.082 20 C 0.060 3.940 21 N -0.495 5.495 22 C 0.229 3.771 23 N -0.439 5.439 24 C 0.085 3.915 25 C -0.134 4.134 26 C -0.127 4.127 27 C -0.036 4.036 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.254 0.746 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.390 0.610 41 H 0.183 0.817 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 13.378 -13.530 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.036 4.036 4 C 0.018 3.982 5 N -0.288 5.288 6 C -0.377 4.377 7 H 0.073 0.927 8 C -0.176 4.176 9 N -0.535 5.535 10 Si 0.729 3.271 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.201 1.201 14 C 0.011 3.989 15 C -0.031 4.031 16 N -0.380 5.380 17 C 0.374 3.626 18 O -0.404 6.404 19 C -0.198 4.198 20 C -0.094 4.094 21 N -0.214 5.214 22 C -0.033 4.033 23 N -0.123 5.123 24 C -0.037 4.037 25 C -0.172 4.172 26 C -0.165 4.165 27 C -0.075 4.075 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.226 0.774 41 H 0.200 0.800 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.084 13.084 -13.788 19.122 hybrid contribution 0.074 -0.934 0.953 1.337 sum 2.158 12.150 -12.834 17.805 Atomic orbital electron populations 1.22641 0.84104 1.01547 0.98506 1.88201 1.16669 1.27503 1.94835 1.23494 0.98783 0.84319 0.96998 1.21061 0.87536 0.96571 0.92994 1.43483 1.75603 1.02842 1.06921 1.18798 1.35261 0.81332 1.02334 0.92660 1.25109 0.95832 0.97891 0.98809 1.69956 1.33610 1.35639 1.14271 0.86368 0.78297 0.85500 0.76919 1.21612 1.21606 1.20136 1.20987 0.93128 0.94734 0.90056 1.22543 1.01402 0.94021 0.85108 1.46356 1.15422 1.52322 1.23922 1.16866 0.85222 0.79217 0.81248 1.90845 1.20049 1.51128 1.78345 1.21213 0.85325 1.11778 1.01452 1.22644 0.99862 0.97493 0.89356 1.70005 1.01432 1.21419 1.28517 1.23446 0.94704 0.98591 0.86549 1.45381 1.07167 1.41117 1.18621 1.22304 0.81209 1.04041 0.96124 1.21951 0.97491 0.98845 0.98902 1.21744 0.98406 0.97338 0.99031 1.20297 0.88902 1.01492 0.96805 0.95112 0.90685 0.95557 0.95732 0.95269 0.87977 0.94111 0.93647 0.93118 0.94257 0.91980 0.91255 0.77415 0.80001 0.88822 0.88190 0.88555 0.90213 0.89573 0.90861 0.88892 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.93 10.18 -35.23 -0.36 -8.29 16 3 C 0.04 0.88 6.28 37.16 0.23 1.11 16 4 C 0.14 3.26 5.76 -4.04 -0.02 3.24 16 5 N -0.57 -13.40 2.40 -173.25 -0.42 -13.81 16 6 C -0.25 -6.60 8.94 -15.06 -0.13 -6.73 16 7 H 0.06 1.51 7.90 -52.49 -0.41 1.10 16 8 C 0.02 0.64 4.99 -17.43 -0.09 0.56 16 9 N -0.89 -25.06 11.52 55.49 0.64 -24.42 16 10 Si 0.90 21.99 29.60 -169.99 -5.03 16.95 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 14 C 0.14 2.64 5.83 -4.05 -0.02 2.62 16 15 C 0.09 1.72 5.97 -4.05 -0.02 1.70 16 16 N -0.73 -10.90 5.37 -61.60 -0.33 -11.23 16 17 C 0.59 9.75 7.78 -12.81 -0.10 9.65 16 18 O -0.53 -10.65 16.92 5.21 0.09 -10.56 16 19 C -0.08 -1.18 6.93 -82.35 -0.57 -1.75 16 20 C 0.06 0.86 11.68 -17.35 -0.20 0.66 16 21 N -0.50 -6.81 11.20 -10.35 -0.12 -6.92 16 22 C 0.23 2.55 7.63 -155.32 -1.19 1.36 16 23 N -0.44 -4.90 3.15 -109.75 -0.35 -5.24 16 24 C 0.09 0.66 5.20 -3.93 -0.02 0.64 16 25 C -0.13 -0.69 5.95 -26.42 -0.16 -0.85 16 26 C -0.13 -0.58 5.97 -26.36 -0.16 -0.74 16 27 C -0.04 -0.24 6.33 -27.48 -0.17 -0.41 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.58 6.49 -51.93 -0.34 0.24 16 33 H 0.10 2.66 5.62 -51.93 -0.29 2.37 16 34 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 35 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 38 H 0.06 1.22 6.49 -51.93 -0.34 0.88 16 39 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.39 4.65 4.77 -40.82 -0.19 4.46 16 41 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 42 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 43 H 0.10 0.81 6.84 -51.93 -0.36 0.45 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -34.06 393.58 -9.24 -43.29 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.78 Total: 1.61 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -1.51 Total: 12.69 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.57 Total: -61.63 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.27 Total: -18.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.06 -9.24 -43.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734581029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.147 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds