Wall clock time and date at job start Tue Mar 31 2020 19:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00431 * 2 1 4 4 C 1.53002 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47009 * 65.00180 * 4 3 2 6 6 C 1.36942 * 119.99782 * 269.99415 * 5 4 3 7 7 H 1.07999 * 120.00100 * 139.91696 * 6 5 4 8 8 C 1.38810 * 119.99969 * 319.92188 * 6 5 4 9 9 N 1.31620 * 120.00117 * 340.76888 * 8 6 5 10 10 Si 1.86802 * 120.00166 * 160.77291 * 8 6 5 11 11 H 1.48502 * 109.47255 * 89.99372 * 10 8 6 12 12 H 1.48495 * 109.47618 * 209.99781 * 10 8 6 13 13 H 1.48504 * 109.47072 * 330.00051 * 10 8 6 14 14 C 1.46493 * 120.00468 * 90.00103 * 5 4 3 15 15 C 1.52998 * 109.47315 * 264.45111 * 14 5 4 16 16 N 1.46492 * 109.47702 * 179.97438 * 15 14 5 17 17 C 1.34780 * 120.00482 * 179.97438 * 16 15 14 18 18 O 1.21675 * 119.99658 * 4.94499 * 17 16 15 19 19 C 1.46764 * 119.99943 * 184.94427 * 17 16 15 20 20 C 1.36834 * 126.91041 * 186.70019 * 19 17 16 21 21 N 1.33455 * 107.83532 * 179.97438 * 20 19 17 22 22 C 1.30556 * 109.68216 * 359.97438 * 21 20 19 23 23 N 1.34872 * 108.99186 * 0.05883 * 22 21 20 24 24 C 1.46447 * 124.99596 * 179.88710 * 23 22 21 25 25 C 1.53268 * 108.81414 * 342.93903 * 24 23 22 26 26 C 1.53341 * 109.41951 * 50.27803 * 25 24 23 27 27 C 1.51115 * 127.08941 * 180.09706 * 22 21 20 28 28 H 1.09003 * 109.46562 * 59.99936 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47262 * 300.00200 * 1 2 3 31 31 H 1.08998 * 109.46779 * 59.99590 * 3 2 1 32 32 H 1.09002 * 109.46767 * 299.99480 * 3 2 1 33 33 H 1.08998 * 109.47170 * 304.99795 * 4 3 2 34 34 H 1.08994 * 109.46702 * 184.99829 * 4 3 2 35 35 H 0.97006 * 119.99856 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47625 * 144.44592 * 14 5 4 37 37 H 1.09002 * 109.47005 * 24.44676 * 14 5 4 38 38 H 1.08997 * 109.47198 * 59.99219 * 15 14 5 39 39 H 1.09002 * 109.46729 * 299.99734 * 15 14 5 40 40 H 0.97009 * 119.99623 * 359.97438 * 16 15 14 41 41 H 1.08001 * 126.08185 * 0.02562 * 20 19 17 42 42 H 1.08993 * 109.58252 * 102.73725 * 24 23 22 43 43 H 1.09006 * 109.57732 * 223.14446 * 24 23 22 44 44 H 1.08993 * 109.47270 * 170.22776 * 25 24 23 45 45 H 1.09004 * 109.47447 * 290.24110 * 25 24 23 46 46 H 1.09000 * 109.55037 * 170.73307 * 26 25 24 47 47 H 1.08992 * 109.55571 * 50.52783 * 26 25 24 48 48 H 1.08993 * 109.71103 * 283.63054 * 27 22 21 49 49 H 1.09004 * 109.70889 * 44.21720 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.0967 -0.7972 -1.3369 7 1 3.7834 -1.3129 -2.2326 8 6 4.6221 -1.5144 -0.2709 9 7 5.3412 -0.9005 0.6447 10 14 4.3086 -3.3510 -0.1358 11 1 5.3857 -4.0903 -0.8419 12 1 4.2928 -3.7466 1.2954 13 1 2.9980 -3.6762 -0.7537 14 6 4.2864 1.4004 -2.4148 15 6 3.0604 1.4828 -3.3263 16 7 3.3709 2.3194 -4.4881 17 6 2.4343 2.5349 -5.4331 18 8 1.3047 2.1101 -5.2781 19 6 2.7771 3.2819 -6.6490 20 6 1.9175 3.6904 -7.6322 21 7 2.6311 4.3367 -8.5564 22 6 3.8888 4.3562 -8.2067 23 7 4.0270 3.7124 -7.0296 24 6 5.2934 3.5255 -6.3182 25 6 6.4495 3.7803 -7.2916 26 6 6.2277 5.1180 -8.0076 27 6 5.0356 4.9851 -8.9636 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8515 0.5681 0.8409 34 1 3.9786 2.1763 0.0889 35 1 5.7087 -1.4019 1.3895 36 1 5.1195 0.9629 -2.9650 37 1 4.5580 2.4015 -2.0799 38 1 2.2274 1.9203 -2.7762 39 1 2.7888 0.4817 -3.6613 40 1 4.2506 2.7184 -4.5773 41 1 0.8512 3.5208 -7.6557 42 1 5.3533 4.2290 -5.4879 43 1 5.3526 2.5049 -5.9399 44 1 7.3885 3.8154 -6.7393 45 1 6.4899 2.9761 -8.0264 46 1 7.1210 5.3810 -8.5742 47 1 6.0200 5.8953 -7.2724 48 1 5.3099 4.3523 -9.8075 49 1 4.7416 5.9710 -9.3237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734581029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:40 Heat of formation + Delta-G solvation = -22.739781 kcal Electronic energy + Delta-G solvation = -29837.317055 eV Core-core repulsion = 25800.284433 eV Total energy + Delta-G solvation = -4037.032621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.56711 -40.53401 -38.93632 -37.74646 -37.35128 -35.87288 -34.36909 -33.31377 -31.25840 -30.90760 -30.07325 -28.95998 -27.17651 -26.11167 -25.29075 -24.28126 -23.34569 -22.60388 -22.28369 -21.56477 -20.19918 -18.88532 -18.52794 -17.52696 -17.31180 -17.01562 -16.92775 -16.62566 -16.46296 -16.25200 -15.75773 -15.59424 -15.44534 -15.30119 -15.14723 -14.94207 -14.83081 -14.56671 -14.29050 -13.85092 -13.63874 -13.42724 -13.05114 -12.89109 -12.72199 -12.51754 -12.43039 -12.37463 -12.12725 -12.02304 -11.98126 -11.91767 -11.75850 -11.57271 -11.51245 -11.11209 -10.75767 -10.48131 -10.43971 -10.22262 -9.52925 -8.53322 -7.79864 -5.43136 0.16952 1.44217 1.47874 1.48939 1.58786 1.70385 1.98560 2.18834 2.56013 3.17208 3.21808 3.33842 3.41371 3.50459 3.71728 3.73776 3.82384 4.14441 4.17159 4.20236 4.27846 4.35627 4.38242 4.41876 4.47447 4.49537 4.54093 4.67536 4.69200 4.79827 4.82262 4.87223 4.88038 4.93942 4.94841 5.04311 5.08203 5.10443 5.13820 5.30506 5.33588 5.42311 5.70116 5.77854 6.00700 6.31803 6.45604 6.63498 6.83662 6.98706 7.21951 7.86639 8.37283 9.17676 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.002859 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.013635 B = 9792.903511 C =10744.565646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.050 3.950 4 C 0.143 3.857 5 N -0.584 5.584 6 C -0.247 4.247 7 H 0.040 0.960 8 C -0.017 4.017 9 N -0.914 5.914 10 Si 0.946 3.054 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.283 1.283 14 C 0.144 3.856 15 C 0.116 3.884 16 N -0.712 5.712 17 C 0.591 3.409 18 O -0.572 6.572 19 C -0.104 4.104 20 C 0.051 3.949 21 N -0.524 5.524 22 C 0.240 3.760 23 N -0.434 5.434 24 C 0.071 3.929 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.038 4.038 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.250 0.750 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.037 0.963 40 H 0.407 0.593 41 H 0.181 0.819 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.074 0.926 48 H 0.107 0.893 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 15.080 -14.504 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.029 4.029 4 C 0.017 3.983 5 N -0.305 5.305 6 C -0.378 4.378 7 H 0.058 0.942 8 C -0.215 4.215 9 N -0.558 5.558 10 Si 0.775 3.225 11 H -0.209 1.209 12 H -0.218 1.218 13 H -0.209 1.209 14 C 0.017 3.983 15 C -0.010 4.010 16 N -0.366 5.366 17 C 0.378 3.622 18 O -0.451 6.451 19 C -0.220 4.220 20 C -0.103 4.103 21 N -0.243 5.243 22 C -0.023 4.023 23 N -0.117 5.117 24 C -0.049 4.049 25 C -0.167 4.167 26 C -0.159 4.159 27 C -0.076 4.076 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.247 0.753 41 H 0.198 0.802 42 H 0.128 0.872 43 H 0.112 0.888 44 H 0.139 0.861 45 H 0.095 0.905 46 H 0.132 0.868 47 H 0.093 0.907 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.754 14.812 -14.771 21.252 hybrid contribution -0.446 -1.388 1.162 1.864 sum 3.308 13.424 -13.609 19.399 Atomic orbital electron populations 1.22799 0.81788 1.02596 0.99823 1.88126 1.19371 1.28775 1.95157 1.23370 0.97238 0.83999 0.98299 1.21016 0.89189 0.96676 0.91409 1.43625 1.76085 1.02403 1.08338 1.18823 1.34125 0.83127 1.01688 0.94190 1.25582 0.96337 1.00548 0.98991 1.70044 1.34697 1.36382 1.14645 0.85646 0.77800 0.82577 0.76498 1.20873 1.21828 1.20893 1.21019 0.93136 0.95422 0.88707 1.22044 1.00576 0.92717 0.85652 1.46095 1.16135 1.51636 1.22721 1.17121 0.84611 0.78638 0.81785 1.90813 1.21898 1.53072 1.79355 1.20797 0.87073 1.13231 1.00857 1.22790 1.00252 0.97563 0.89737 1.70025 1.02840 1.22503 1.28933 1.24393 0.95034 0.96714 0.86121 1.45557 1.07136 1.40322 1.18729 1.22700 0.80604 1.04254 0.97388 1.22005 0.97061 0.99120 0.98513 1.21764 0.98380 0.96913 0.98802 1.20611 0.87952 1.01855 0.97224 0.94706 0.89913 0.93163 0.93302 0.94802 0.91444 0.91994 0.94040 0.92917 0.91400 0.93279 0.94467 0.75347 0.80183 0.87162 0.88753 0.86129 0.90453 0.86816 0.90742 0.87470 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.01 113.37 1.25 2.15 16 2 O -0.40 -17.63 10.18 -148.98 -1.52 -19.15 16 3 C 0.05 1.97 6.28 71.98 0.45 2.42 16 4 C 0.14 6.38 5.76 86.38 0.50 6.88 16 5 N -0.58 -27.42 2.40 -702.03 -1.68 -29.10 16 6 C -0.25 -13.31 8.94 84.03 0.75 -12.56 16 7 H 0.04 2.24 7.90 -2.91 -0.02 2.22 16 8 C -0.02 -0.93 4.99 84.86 0.42 -0.51 16 9 N -0.91 -51.74 11.52 21.65 0.25 -51.49 16 10 Si 0.95 45.67 29.60 68.60 2.03 47.70 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 14 C 0.14 5.35 5.83 86.38 0.50 5.85 16 15 C 0.12 4.25 5.97 86.38 0.52 4.77 16 16 N -0.71 -21.01 5.37 -467.02 -2.51 -23.52 16 17 C 0.59 19.85 7.78 86.47 0.67 20.52 16 18 O -0.57 -23.94 16.92 -4.27 -0.07 -24.01 16 19 C -0.10 -2.96 6.93 40.14 0.28 -2.68 16 20 C 0.05 1.49 11.68 84.12 0.98 2.47 16 21 N -0.52 -14.13 11.20 -186.67 -2.09 -16.22 16 22 C 0.24 4.93 7.63 138.30 1.06 5.98 16 23 N -0.43 -9.07 3.15 -501.15 -1.58 -10.65 16 24 C 0.07 0.92 5.20 86.48 0.45 1.37 16 25 C -0.13 -0.86 5.95 30.80 0.18 -0.67 16 26 C -0.12 -0.61 5.97 30.84 0.18 -0.43 16 27 C -0.04 -0.38 6.33 30.11 0.19 -0.19 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.03 1.31 6.49 -2.39 -0.02 1.29 16 33 H 0.07 3.55 5.62 -2.39 -0.01 3.53 16 34 H 0.06 2.43 7.86 -2.39 -0.02 2.41 16 35 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 36 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 37 H 0.07 2.15 7.83 -2.39 -0.02 2.13 16 38 H 0.05 1.94 6.49 -2.39 -0.02 1.92 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.41 9.11 4.77 -92.70 -0.44 8.67 16 41 H 0.18 5.04 8.06 -2.91 -0.02 5.02 16 42 H 0.11 1.07 7.91 -2.39 -0.02 1.06 16 43 H 0.09 1.34 6.84 -2.38 -0.02 1.32 16 44 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.08 0.59 8.12 -2.38 -0.02 0.57 16 46 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 48 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -75.87 393.58 1.73 -74.14 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.51 Total: 16.92 kcal Atomic # 6 Polarization: 26.99 SS G_CDS: 8.39 Total: 35.38 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -7.61 Total: -130.99 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -1.59 Total: -43.16 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.87 1.73 -74.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734581029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.402 kcal (2) G-P(sol) polarization free energy of solvation -75.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds