Wall clock time and date at job start Tue Mar 31 2020 19:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99890 * 2 1 4 4 N 1.46511 * 109.46812 * 125.88321 * 3 2 1 5 5 C 1.36734 * 127.13343 * 83.61600 * 4 3 2 6 6 C 1.50698 * 126.35294 * 359.94613 * 5 4 3 7 7 H 1.09005 * 110.26878 * 345.63517 * 6 5 4 8 8 C 1.54942 * 110.31030 * 107.82897 * 6 5 4 9 9 C 1.55301 * 100.94160 * 155.36169 * 8 6 5 10 10 C 1.54379 * 102.25587 * 325.86963 * 9 8 6 11 11 O 1.43238 * 107.58596 * 21.35319 * 10 9 8 12 12 N 1.30296 * 107.30287 * 179.97438 * 5 4 3 13 13 N 1.28530 * 110.05480 * 0.02562 * 12 5 4 14 14 C 1.31219 * 109.85649 * 359.73994 * 13 12 5 15 15 N 1.38582 * 126.47311 * 180.26197 * 14 13 12 16 16 C 1.46900 * 110.99950 * 251.00953 * 15 14 13 17 17 C 1.50697 * 109.47647 * 65.21482 * 16 15 14 18 18 H 1.08003 * 119.99552 * 2.35117 * 17 16 15 19 19 C 1.37871 * 120.00458 * 182.34928 * 17 16 15 20 20 N 1.31516 * 119.99942 * 184.75693 * 19 17 16 21 21 Si 1.86798 * 120.00015 * 4.75684 * 19 17 16 22 22 H 1.48498 * 109.47110 * 86.86343 * 21 19 17 23 23 H 1.48495 * 109.47303 * 206.86319 * 21 19 17 24 24 H 1.48499 * 109.47224 * 326.86504 * 21 19 17 25 25 C 1.46900 * 111.00021 * 14.95765 * 15 14 13 26 26 C 1.53002 * 109.47049 * 162.13869 * 25 15 14 27 27 O 1.42895 * 109.47129 * 67.24840 * 26 25 15 28 28 C 1.42901 * 113.99893 * 180.02562 * 27 26 25 29 29 H 1.08006 * 120.00039 * 4.96944 * 1 2 3 30 30 H 1.07999 * 120.00032 * 184.97594 * 1 2 3 31 31 H 1.07998 * 119.99433 * 179.73286 * 2 1 3 32 32 H 1.08995 * 109.47343 * 245.87837 * 3 2 1 33 33 H 1.08999 * 109.47614 * 5.88746 * 3 2 1 34 34 H 1.09002 * 111.12734 * 273.28444 * 8 6 5 35 35 H 1.09004 * 111.12612 * 37.44446 * 8 6 5 36 36 H 1.09002 * 110.85115 * 207.67579 * 9 8 6 37 37 H 1.09006 * 111.02463 * 84.14021 * 9 8 6 38 38 H 1.09004 * 109.83111 * 261.84583 * 10 9 8 39 39 H 1.08997 * 109.83223 * 140.86695 * 10 9 8 40 40 H 1.09004 * 109.47224 * 185.21830 * 16 15 14 41 41 H 1.09000 * 109.47257 * 305.21454 * 16 15 14 42 42 H 0.97003 * 119.99602 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47363 * 282.14154 * 25 15 14 44 44 H 1.09002 * 109.46843 * 42.14087 * 25 15 14 45 45 H 1.08998 * 109.46987 * 187.25125 * 26 25 15 46 46 H 1.08997 * 109.47164 * 307.24716 * 26 25 15 47 47 H 1.09001 * 109.46941 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.47339 * 299.99954 * 28 27 26 49 49 H 1.08996 * 109.47716 * 59.99988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0088 1.3232 1.1192 5 6 4.2649 0.7837 1.1475 6 6 4.9471 0.0489 0.0224 7 1 4.2222 -0.2244 -0.7444 8 6 6.0730 0.9224 -0.5858 9 6 6.9984 -0.1685 -1.1903 10 6 6.8402 -1.3275 -0.1829 11 8 5.6102 -1.1233 0.5221 12 7 4.7626 1.0221 2.3278 13 7 3.9127 1.6701 3.0418 14 6 2.8204 1.8863 2.3476 15 7 1.6881 2.5575 2.7812 16 6 0.5692 1.6271 2.9822 17 6 0.8990 0.6802 4.1072 18 1 1.8287 0.7855 4.6466 19 6 0.0138 -0.3204 4.4480 20 7 0.2571 -1.0873 5.4884 21 14 -1.5309 -0.5869 3.4321 22 1 -1.2260 -1.4932 2.2960 23 1 -2.5839 -1.1969 4.2831 24 1 -2.0109 0.7176 2.9096 25 6 1.9648 3.3202 4.0058 26 6 0.8743 4.3743 4.2075 27 8 -0.3672 3.7268 4.4925 28 6 -1.4582 4.6266 4.6983 29 1 -0.5400 0.9318 -0.0810 30 1 -0.5400 -0.9318 0.0811 31 1 1.8499 -0.9353 0.0044 32 1 2.6089 1.4098 -0.9379 33 1 1.3599 2.1309 0.1054 34 1 5.6833 1.5812 -1.3619 35 1 6.5896 1.4916 0.1871 36 1 8.0320 0.1759 -1.2263 37 1 6.6560 -0.4665 -2.1814 38 1 7.6739 -1.3235 0.5193 39 1 6.8079 -2.2782 -0.7151 40 1 -0.3305 2.1893 3.2324 41 1 0.4000 1.0592 2.0673 42 1 -0.3655 -1.7915 5.7279 43 1 1.9784 2.6435 4.8601 44 1 2.9335 3.8120 3.9164 45 1 1.1455 5.0229 5.0404 46 1 0.7733 4.9707 3.3007 47 1 -2.3635 4.0575 4.9095 48 1 -1.2356 5.2807 5.5413 49 1 -1.6075 5.2278 3.8015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001749645560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:57 Heat of formation + Delta-G solvation = 38.685395 kcal Electronic energy + Delta-G solvation = -31338.316933 eV Core-core repulsion = 27303.947907 eV Total energy + Delta-G solvation = -4034.369026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35631 -39.29180 -37.98053 -36.29639 -35.76837 -32.49867 -32.38744 -32.15296 -30.96618 -29.48092 -28.19408 -26.64253 -26.41616 -25.57783 -23.56009 -22.38689 -21.83830 -21.75835 -20.49750 -19.63998 -19.53519 -17.25515 -16.99192 -16.66019 -16.04314 -15.97062 -15.76203 -15.53491 -15.07579 -14.86935 -14.66279 -14.34792 -14.08850 -13.85696 -13.44416 -13.33767 -13.26766 -12.60466 -12.29536 -12.05099 -11.98005 -11.88097 -11.75119 -11.48495 -11.42808 -11.35790 -11.16313 -11.05447 -10.98943 -10.83203 -10.67348 -10.34723 -10.08871 -9.81238 -9.62759 -9.58376 -9.44853 -9.24471 -9.12722 -8.66818 -8.43409 -7.41628 -5.99066 -3.96372 2.02388 2.42038 2.94817 3.25999 3.34391 3.36623 3.48011 4.01936 4.27278 4.29626 4.44641 4.53830 4.60173 4.72049 4.79348 4.94543 5.00581 5.03105 5.16606 5.19968 5.34245 5.49266 5.51789 5.55609 5.57737 5.60253 5.67500 5.71164 5.76082 5.77110 5.85342 5.92981 5.96058 5.98092 6.00372 6.10408 6.34915 6.54113 6.66629 6.77166 6.80694 6.86016 6.98709 7.14104 7.27065 7.42271 7.68732 7.80668 8.07967 8.51430 9.08072 9.48933 9.61469 11.14421 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.004404 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.335625 B = 6355.761661 C = 7119.319532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.181 4.181 3 C 0.144 3.856 4 N -0.470 5.470 5 C 0.144 3.856 6 C 0.183 3.817 7 H 0.083 0.917 8 C -0.143 4.143 9 C -0.154 4.154 10 C 0.051 3.949 11 O -0.358 6.358 12 N -0.258 5.258 13 N -0.327 5.327 14 C 0.413 3.587 15 N -0.458 5.458 16 C 0.147 3.853 17 C -0.538 4.538 18 H 0.083 0.917 19 C 0.079 3.921 20 N -0.895 5.895 21 Si 0.867 3.133 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.263 1.263 25 C 0.070 3.930 26 C 0.071 3.929 27 O -0.361 6.361 28 C 0.029 3.971 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.034 0.966 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 7.958 -16.149 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.200 4.200 3 C 0.021 3.979 4 N -0.166 5.166 5 C -0.123 4.123 6 C 0.122 3.878 7 H 0.100 0.900 8 C -0.182 4.182 9 C -0.192 4.192 10 C -0.026 4.026 11 O -0.276 6.276 12 N -0.099 5.099 13 N -0.172 5.172 14 C 0.057 3.943 15 N -0.181 5.181 16 C 0.023 3.977 17 C -0.576 4.576 18 H 0.101 0.899 19 C -0.124 4.124 20 N -0.533 5.533 21 Si 0.695 3.305 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.187 1.187 25 C -0.057 4.057 26 C -0.006 4.006 27 O -0.279 6.279 28 C -0.068 4.068 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.052 0.948 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.222 7.837 -15.062 17.764 hybrid contribution -1.743 -0.599 -1.013 2.103 sum 3.478 7.239 -16.075 17.970 Atomic orbital electron populations 1.23942 0.95743 1.02569 0.96949 1.23010 0.96382 0.97922 1.02722 1.20808 0.91679 0.97811 0.87635 1.45895 1.13202 1.44883 1.12586 1.23917 0.84623 1.05053 0.98746 1.20731 0.93556 0.84491 0.88985 0.89968 1.23296 0.95866 0.98052 1.00940 1.23118 1.01186 0.95530 0.99319 1.23149 0.87468 0.97855 0.94149 1.88579 1.34427 1.43315 1.61256 1.73832 1.24348 1.11788 0.99883 1.74712 1.01203 1.18597 1.22688 1.22624 0.95044 0.94355 0.82297 1.59310 1.02096 1.24456 1.32276 1.20787 0.88844 0.90874 0.97196 1.21536 1.06673 1.12903 1.16514 0.89938 1.24804 0.97279 0.95684 0.94602 1.69932 1.37069 1.20353 1.25945 0.87024 0.83948 0.78890 0.80683 1.20210 1.21537 1.18728 1.22041 0.95968 0.95451 0.92269 1.22514 0.85001 0.94717 0.98403 1.88262 1.16778 1.31545 1.91299 1.22678 0.91151 0.94335 0.98656 0.88050 0.87774 0.86781 0.89015 0.87787 0.89739 0.89167 0.89740 0.90459 0.90953 0.91283 0.91100 0.95318 0.92893 0.89515 0.90040 0.93177 0.93529 0.90188 0.94772 0.94879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 12.52 29.01 0.36 -1.95 16 2 C -0.18 -2.77 9.11 -36.03 -0.33 -3.10 16 3 C 0.14 2.05 5.52 -5.19 -0.03 2.02 16 4 N -0.47 -8.77 2.79 -115.36 -0.32 -9.09 16 5 C 0.14 2.73 7.00 -154.02 -1.08 1.65 16 6 C 0.18 2.64 3.81 -26.86 -0.10 2.53 16 7 H 0.08 1.01 7.50 -51.93 -0.39 0.62 16 8 C -0.14 -1.54 6.56 -24.49 -0.16 -1.70 16 9 C -0.15 -1.31 7.02 -24.79 -0.17 -1.48 16 10 C 0.05 0.56 7.79 37.88 0.30 0.86 16 11 O -0.36 -5.83 11.02 -35.23 -0.39 -6.22 16 12 N -0.26 -5.86 12.18 32.99 0.40 -5.46 16 13 N -0.33 -7.87 11.24 30.31 0.34 -7.53 16 14 C 0.41 9.01 6.05 -318.88 -1.93 7.08 16 15 N -0.46 -9.62 4.63 -175.88 -0.82 -10.44 16 16 C 0.15 3.47 3.75 -4.98 -0.02 3.45 16 17 C -0.54 -15.38 8.19 -34.44 -0.28 -15.66 16 18 H 0.08 2.69 6.68 -52.48 -0.35 2.33 16 19 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 20 N -0.89 -28.34 13.96 55.43 0.77 -27.56 16 21 Si 0.87 21.48 27.36 -169.99 -4.65 16.83 16 22 H -0.28 -6.57 7.05 56.52 0.40 -6.17 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.26 -6.12 6.74 56.52 0.38 -5.74 16 25 C 0.07 1.40 4.85 -3.82 -0.02 1.38 16 26 C 0.07 1.18 6.23 37.16 0.23 1.41 16 27 O -0.36 -6.86 7.80 -35.23 -0.27 -7.14 16 28 C 0.03 0.41 11.01 101.05 1.11 1.52 16 29 H 0.10 1.37 7.86 -52.48 -0.41 0.95 16 30 H 0.10 1.58 8.00 -52.49 -0.42 1.16 16 31 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.09 0.96 7.84 -51.93 -0.41 0.55 16 33 H 0.10 1.44 7.75 -51.93 -0.40 1.04 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.71 4.96 -51.93 -0.26 1.45 16 41 H 0.03 0.66 3.60 -51.93 -0.19 0.47 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.09 2.08 6.00 -51.93 -0.31 1.77 16 44 H 0.08 1.52 7.68 -51.93 -0.40 1.12 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -36.80 390.50 -9.03 -45.83 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.76 Total: 4.64 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.22 Total: 0.24 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.38 Total: -60.07 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.66 Total: -13.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.65 Total: 16.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.80 -9.03 -45.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001749645560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.518 kcal (2) G-P(sol) polarization free energy of solvation -36.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds