Wall clock time and date at job start Tue Mar 31 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99890 * 2 1 4 4 N 1.46511 * 109.46812 * 125.88321 * 3 2 1 5 5 C 1.36734 * 127.13343 * 83.61600 * 4 3 2 6 6 C 1.50698 * 126.35294 * 359.94613 * 5 4 3 7 7 H 1.09005 * 110.26878 * 345.63517 * 6 5 4 8 8 C 1.54942 * 110.31030 * 107.82897 * 6 5 4 9 9 C 1.55301 * 100.94160 * 155.36169 * 8 6 5 10 10 C 1.54379 * 102.25587 * 325.86963 * 9 8 6 11 11 O 1.43238 * 107.58596 * 21.35319 * 10 9 8 12 12 N 1.30296 * 107.30287 * 179.97438 * 5 4 3 13 13 N 1.28530 * 110.05480 * 0.02562 * 12 5 4 14 14 C 1.31219 * 109.85649 * 359.73994 * 13 12 5 15 15 N 1.38582 * 126.47311 * 180.26197 * 14 13 12 16 16 C 1.46900 * 110.99950 * 251.00953 * 15 14 13 17 17 C 1.50697 * 109.47647 * 65.21482 * 16 15 14 18 18 H 1.08003 * 119.99552 * 2.35117 * 17 16 15 19 19 C 1.37871 * 120.00458 * 182.34928 * 17 16 15 20 20 N 1.31516 * 119.99942 * 184.75693 * 19 17 16 21 21 Si 1.86798 * 120.00015 * 4.75684 * 19 17 16 22 22 H 1.48498 * 109.47110 * 86.86343 * 21 19 17 23 23 H 1.48495 * 109.47303 * 206.86319 * 21 19 17 24 24 H 1.48499 * 109.47224 * 326.86504 * 21 19 17 25 25 C 1.46900 * 111.00021 * 14.95765 * 15 14 13 26 26 C 1.53002 * 109.47049 * 162.13869 * 25 15 14 27 27 O 1.42895 * 109.47129 * 67.24840 * 26 25 15 28 28 C 1.42901 * 113.99893 * 180.02562 * 27 26 25 29 29 H 1.08006 * 120.00039 * 4.96944 * 1 2 3 30 30 H 1.07999 * 120.00032 * 184.97594 * 1 2 3 31 31 H 1.07998 * 119.99433 * 179.73286 * 2 1 3 32 32 H 1.08995 * 109.47343 * 245.87837 * 3 2 1 33 33 H 1.08999 * 109.47614 * 5.88746 * 3 2 1 34 34 H 1.09002 * 111.12734 * 273.28444 * 8 6 5 35 35 H 1.09004 * 111.12612 * 37.44446 * 8 6 5 36 36 H 1.09002 * 110.85115 * 207.67579 * 9 8 6 37 37 H 1.09006 * 111.02463 * 84.14021 * 9 8 6 38 38 H 1.09004 * 109.83111 * 261.84583 * 10 9 8 39 39 H 1.08997 * 109.83223 * 140.86695 * 10 9 8 40 40 H 1.09004 * 109.47224 * 185.21830 * 16 15 14 41 41 H 1.09000 * 109.47257 * 305.21454 * 16 15 14 42 42 H 0.97003 * 119.99602 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47363 * 282.14154 * 25 15 14 44 44 H 1.09002 * 109.46843 * 42.14087 * 25 15 14 45 45 H 1.08998 * 109.46987 * 187.25125 * 26 25 15 46 46 H 1.08997 * 109.47164 * 307.24716 * 26 25 15 47 47 H 1.09001 * 109.46941 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.47339 * 299.99954 * 28 27 26 49 49 H 1.08996 * 109.47716 * 59.99988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0088 1.3232 1.1192 5 6 4.2649 0.7837 1.1475 6 6 4.9471 0.0489 0.0224 7 1 4.2222 -0.2244 -0.7444 8 6 6.0730 0.9224 -0.5858 9 6 6.9984 -0.1685 -1.1903 10 6 6.8402 -1.3275 -0.1829 11 8 5.6102 -1.1233 0.5221 12 7 4.7626 1.0221 2.3278 13 7 3.9127 1.6701 3.0418 14 6 2.8204 1.8863 2.3476 15 7 1.6881 2.5575 2.7812 16 6 0.5692 1.6271 2.9822 17 6 0.8990 0.6802 4.1072 18 1 1.8287 0.7855 4.6466 19 6 0.0138 -0.3204 4.4480 20 7 0.2571 -1.0873 5.4884 21 14 -1.5309 -0.5869 3.4321 22 1 -1.2260 -1.4932 2.2960 23 1 -2.5839 -1.1969 4.2831 24 1 -2.0109 0.7176 2.9096 25 6 1.9648 3.3202 4.0058 26 6 0.8743 4.3743 4.2075 27 8 -0.3672 3.7268 4.4925 28 6 -1.4582 4.6266 4.6983 29 1 -0.5400 0.9318 -0.0810 30 1 -0.5400 -0.9318 0.0811 31 1 1.8499 -0.9353 0.0044 32 1 2.6089 1.4098 -0.9379 33 1 1.3599 2.1309 0.1054 34 1 5.6833 1.5812 -1.3619 35 1 6.5896 1.4916 0.1871 36 1 8.0320 0.1759 -1.2263 37 1 6.6560 -0.4665 -2.1814 38 1 7.6739 -1.3235 0.5193 39 1 6.8079 -2.2782 -0.7151 40 1 -0.3305 2.1893 3.2324 41 1 0.4000 1.0592 2.0673 42 1 -0.3655 -1.7915 5.7279 43 1 1.9784 2.6435 4.8601 44 1 2.9335 3.8120 3.9164 45 1 1.1455 5.0229 5.0404 46 1 0.7733 4.9707 3.3007 47 1 -2.3635 4.0575 4.9095 48 1 -1.2356 5.2807 5.5413 49 1 -1.6075 5.2278 3.8015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001749645560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:56 Heat of formation + Delta-G solvation = 12.700279 kcal Electronic energy + Delta-G solvation = -31339.443732 eV Core-core repulsion = 27303.947907 eV Total energy + Delta-G solvation = -4035.495825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.91422 -40.33019 -39.46941 -37.78294 -37.09972 -34.58772 -33.79659 -33.15741 -32.22832 -31.07562 -29.73206 -28.15170 -27.69390 -26.94176 -24.88018 -24.05013 -23.39940 -22.56903 -21.82666 -21.19273 -20.81467 -19.20194 -18.42691 -17.89035 -17.43245 -17.28045 -17.07544 -16.88115 -16.53239 -16.25060 -15.88196 -15.86045 -15.56348 -15.24099 -14.70161 -14.53359 -14.38989 -14.19531 -14.00612 -13.49863 -13.38198 -13.07082 -12.89410 -12.73845 -12.70637 -12.64492 -12.55836 -12.35565 -12.29418 -12.25899 -12.09255 -11.82420 -11.75107 -11.70557 -11.30671 -11.00957 -10.80735 -10.70181 -10.45484 -10.32868 -10.31814 -9.16765 -8.25475 -6.27852 0.64845 1.06392 1.28447 1.34099 1.44415 1.61569 1.88975 2.35273 2.90384 2.99383 3.07029 3.13064 3.28010 3.56422 3.66142 3.82006 3.89950 4.01126 4.10282 4.13094 4.13777 4.28463 4.34340 4.37057 4.49771 4.50553 4.57973 4.61655 4.67376 4.74758 4.82178 4.83448 4.89850 4.91268 4.92764 5.00457 5.03325 5.10784 5.12942 5.26710 5.30323 5.48221 5.50905 5.59767 5.71905 5.87480 6.02202 6.25117 6.39967 6.49884 6.76847 7.33539 7.88174 8.92403 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.004404 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.335625 B = 6355.761661 C = 7119.319532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.193 4.193 3 C 0.135 3.865 4 N -0.466 5.466 5 C 0.164 3.836 6 C 0.174 3.826 7 H 0.112 0.888 8 C -0.137 4.137 9 C -0.138 4.138 10 C 0.038 3.962 11 O -0.402 6.402 12 N -0.312 5.312 13 N -0.371 5.371 14 C 0.391 3.609 15 N -0.438 5.438 16 C 0.162 3.838 17 C -0.531 4.531 18 H 0.024 0.976 19 C 0.010 3.990 20 N -0.954 5.954 21 Si 0.935 3.065 22 H -0.257 1.257 23 H -0.293 1.293 24 H -0.230 1.230 25 C 0.072 3.928 26 C 0.079 3.921 27 O -0.404 6.404 28 C 0.024 3.976 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.261 0.739 43 H 0.034 0.966 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 9.461 -20.652 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.212 4.212 3 C 0.014 3.986 4 N -0.161 5.161 5 C -0.106 4.106 6 C 0.114 3.886 7 H 0.130 0.870 8 C -0.175 4.175 9 C -0.175 4.175 10 C -0.037 4.037 11 O -0.320 6.320 12 N -0.151 5.151 13 N -0.215 5.215 14 C 0.033 3.967 15 N -0.162 5.162 16 C 0.036 3.964 17 C -0.570 4.570 18 H 0.043 0.957 19 C -0.187 4.187 20 N -0.595 5.595 21 Si 0.758 3.242 22 H -0.182 1.182 23 H -0.219 1.219 24 H -0.153 1.153 25 C -0.055 4.055 26 C 0.002 3.998 27 O -0.323 6.323 28 C -0.072 4.072 29 H 0.140 0.860 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.875 9.370 -19.601 22.069 hybrid contribution -1.166 -1.103 0.438 1.664 sum 2.709 8.267 -19.163 21.046 Atomic orbital electron populations 1.24156 0.95713 1.03473 0.96071 1.23047 0.96746 0.97967 1.03466 1.21260 0.91801 0.97607 0.87892 1.46171 1.13636 1.43712 1.12540 1.24945 0.84410 1.02658 0.98558 1.21233 0.95098 0.84667 0.87560 0.87044 1.23294 0.94826 0.98424 1.00975 1.23117 1.01869 0.93064 0.99443 1.23428 0.85440 1.00155 0.94717 1.88530 1.36464 1.43974 1.63080 1.73733 1.25492 1.13931 1.01920 1.74569 1.02633 1.19791 1.24517 1.22783 0.94874 0.95458 0.83539 1.59418 1.01304 1.23278 1.32179 1.20568 0.89933 0.90313 0.95538 1.21718 1.04286 1.13837 1.17124 0.95749 1.25849 1.01661 0.95299 0.95896 1.70139 1.39027 1.21687 1.28683 0.85934 0.78595 0.80537 0.79132 1.18198 1.21922 1.15279 1.22017 0.98248 0.95276 0.89984 1.22498 0.83361 0.93357 1.00592 1.88158 1.18277 1.34162 1.91746 1.22871 0.89599 0.94190 1.00543 0.86024 0.88049 0.87927 0.84325 0.86750 0.86486 0.91552 0.87877 0.87567 0.91711 0.89383 0.90497 0.93728 0.93045 0.94797 0.89397 0.90917 0.90766 0.90184 0.93153 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 12.52 67.78 0.85 -3.30 16 2 C -0.19 -5.39 9.11 25.64 0.23 -5.16 16 3 C 0.14 3.43 5.52 85.63 0.47 3.90 16 4 N -0.47 -16.96 2.79 -518.90 -1.45 -18.41 16 5 C 0.16 6.20 7.00 137.64 0.96 7.16 16 6 C 0.17 4.73 3.81 30.51 0.12 4.85 16 7 H 0.11 2.35 7.50 -2.38 -0.02 2.33 16 8 C -0.14 -2.58 6.56 32.05 0.21 -2.37 16 9 C -0.14 -1.85 7.02 31.85 0.22 -1.63 16 10 C 0.04 0.80 7.79 72.45 0.56 1.37 16 11 O -0.40 -12.95 11.02 -148.98 -1.64 -14.59 16 12 N -0.31 -14.82 12.18 -49.54 -0.60 -15.42 16 13 N -0.37 -18.89 11.24 -58.01 -0.65 -19.54 16 14 C 0.39 17.41 6.05 260.11 1.57 18.99 16 15 N -0.44 -18.49 4.63 -710.36 -3.29 -21.78 16 16 C 0.16 7.57 3.75 85.56 0.32 7.89 16 17 C -0.53 -31.66 8.19 25.60 0.21 -31.45 16 18 H 0.02 1.71 6.68 -2.91 -0.02 1.70 16 19 C 0.01 0.58 5.47 84.65 0.46 1.04 16 20 N -0.95 -63.52 13.96 21.45 0.30 -63.22 16 21 Si 0.94 44.07 27.36 68.60 1.88 45.94 16 22 H -0.26 -11.25 7.05 99.48 0.70 -10.55 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.23 -9.57 6.74 99.48 0.67 -8.90 16 25 C 0.07 2.99 4.85 86.30 0.42 3.41 16 26 C 0.08 2.52 6.23 71.98 0.45 2.97 16 27 O -0.40 -14.93 7.80 -148.98 -1.16 -16.09 16 28 C 0.02 0.62 11.01 113.37 1.25 1.87 16 29 H 0.12 2.72 7.86 -2.91 -0.02 2.70 16 30 H 0.10 2.75 8.00 -2.91 -0.02 2.73 16 31 H 0.10 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.14 2.20 7.84 -2.39 -0.02 2.18 16 33 H 0.11 2.71 7.75 -2.39 -0.02 2.70 16 34 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 3.58 4.96 -2.38 -0.01 3.57 16 41 H 0.04 1.95 3.60 -2.39 -0.01 1.94 16 42 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 43 H 0.03 1.76 6.00 -2.39 -0.01 1.74 16 44 H 0.09 3.43 7.68 -2.39 -0.02 3.41 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -89.31 390.50 2.59 -86.73 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.90 Total: 26.84 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 8.32 Total: 9.55 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -5.70 Total: -138.38 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -2.81 Total: -30.68 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.94 kcal Total: -89.31 2.59 -86.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001749645560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.426 kcal (2) G-P(sol) polarization free energy of solvation -89.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds