Wall clock time and date at job start Tue Mar 31 2020 19:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30837 * 125.96504 * 2 1 4 4 C 1.33237 * 109.82934 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52697 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47103 * 89.99977 * 5 4 3 7 7 O 1.21279 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99831 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47072 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47275 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.46961 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99937 * 294.30298 * 12 11 10 14 14 C 1.53237 * 109.34105 * 172.75282 * 13 12 11 15 15 N 1.47080 * 108.52333 * 53.82641 * 14 13 12 16 16 C 1.36937 * 120.88318 * 128.84114 * 15 14 13 17 17 H 1.07993 * 120.00033 * 206.56844 * 16 15 14 18 18 C 1.38807 * 119.99620 * 26.56170 * 16 15 14 19 19 N 1.31619 * 120.00396 * 17.02148 * 18 16 15 20 20 Si 1.86803 * 120.00042 * 197.01704 * 18 16 15 21 21 H 1.48499 * 109.47019 * 59.99907 * 20 18 16 22 22 H 1.48495 * 109.47691 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47012 * 300.00655 * 20 18 16 24 24 C 1.47076 * 118.23570 * 308.81547 * 15 14 13 25 25 C 1.46898 * 110.99710 * 170.00246 * 12 11 10 26 26 N 1.30715 * 108.95106 * 0.26254 * 4 3 2 27 27 N 1.34433 * 125.96085 * 180.02562 * 2 1 3 28 28 H 0.96997 * 126.81909 * 359.97438 * 27 2 1 29 29 H 1.09006 * 109.46854 * 89.97600 * 1 2 3 30 30 H 1.08998 * 109.47368 * 209.97719 * 1 2 3 31 31 H 1.08994 * 109.47031 * 329.98328 * 1 2 3 32 32 H 1.09007 * 109.47084 * 330.00541 * 5 4 3 33 33 H 1.09000 * 109.47780 * 210.00209 * 5 4 3 34 34 H 0.97001 * 120.00187 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47236 * 299.99499 * 9 8 6 36 36 H 1.08997 * 109.47649 * 59.99936 * 9 8 6 37 37 H 1.09000 * 109.47534 * 299.99962 * 10 9 8 38 38 H 1.09004 * 109.47439 * 59.99745 * 10 9 8 39 39 H 1.09001 * 109.46833 * 299.99997 * 11 10 9 40 40 H 1.08997 * 109.46627 * 60.00288 * 11 10 9 41 41 H 1.09009 * 109.49266 * 292.70761 * 13 12 11 42 42 H 1.08997 * 109.49830 * 52.78781 * 13 12 11 43 43 H 1.09010 * 109.62509 * 294.11984 * 14 13 12 44 44 H 1.08995 * 109.63023 * 173.53984 * 14 13 12 45 45 H 0.96999 * 120.00226 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.63311 * 291.47390 * 24 15 14 47 47 H 1.09001 * 109.79112 * 170.98659 * 24 15 14 48 48 H 1.08994 * 109.49488 * 307.20957 * 25 12 11 49 49 H 1.09001 * 109.49421 * 67.29617 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6234 -0.0013 6 6 5.1320 1.9353 1.4193 7 8 4.5145 1.4462 2.3415 8 7 6.1711 2.7577 1.6649 9 6 6.5551 3.0603 3.0459 10 6 7.7552 4.0095 3.0452 11 6 8.1559 4.3261 4.4875 12 7 9.3077 5.2379 4.4867 13 6 10.4959 4.5846 3.9216 14 6 11.6190 5.6162 3.7712 15 7 11.8286 6.2716 5.0711 16 6 13.0799 6.3593 5.6204 17 1 13.1956 6.4304 6.6918 18 6 14.1997 6.3566 4.8000 19 7 14.0739 6.6062 3.5139 20 14 15.8852 5.9987 5.5215 21 1 15.8849 4.6453 6.1325 22 1 16.9067 6.0562 4.4453 23 1 16.2039 7.0107 6.5605 24 6 10.6587 6.8309 5.7651 25 6 9.5734 5.7514 5.8372 26 7 3.6195 -0.6169 -0.0066 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 4.4699 2.5469 -0.5151 33 1 5.5741 1.1508 -0.5155 34 1 6.6652 3.1485 0.9274 35 1 5.7183 3.5325 3.5606 36 1 6.8231 2.1369 3.5593 37 1 8.5919 3.5370 2.5307 38 1 7.4877 4.9330 2.5317 39 1 7.3190 4.7989 5.0016 40 1 8.4233 3.4028 5.0013 41 1 10.8228 3.7856 4.5872 42 1 10.2517 4.1676 2.9446 43 1 11.3350 6.3607 3.0273 44 1 12.5364 5.1161 3.4611 45 1 14.8564 6.6047 2.9407 46 1 10.2825 7.6921 5.2130 47 1 10.9388 7.1363 6.7733 48 1 8.6602 6.1807 6.2493 49 1 9.9132 4.9362 6.4760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752343471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:14 Heat of formation + Delta-G solvation = 74.093606 kcal Electronic energy + Delta-G solvation = -27900.926941 eV Core-core repulsion = 23900.386082 eV Total energy + Delta-G solvation = -4000.540860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.51572 -39.79897 -38.24639 -35.82721 -34.34363 -34.04428 -32.74223 -32.12893 -30.88043 -29.91283 -29.86309 -28.14555 -26.73800 -24.49147 -22.95040 -22.48564 -22.01555 -21.31517 -21.03888 -20.09878 -19.07419 -18.28129 -17.38491 -16.83663 -16.24977 -16.01151 -15.87412 -15.14179 -15.05547 -14.56188 -14.46930 -14.18026 -13.97635 -13.83684 -13.67623 -13.41748 -13.28415 -13.23093 -13.06372 -12.99101 -12.49924 -12.20843 -12.02855 -11.79302 -11.53972 -11.29480 -11.02710 -10.84964 -10.70634 -10.56066 -10.42285 -10.39013 -10.26355 -10.12173 -10.01575 -9.77404 -9.71346 -9.56972 -9.24427 -8.48922 -7.80632 -6.64804 -5.76717 -3.17547 1.20878 2.21958 2.38411 2.43720 3.07098 3.39374 3.45023 3.46347 3.56773 4.11313 4.33424 4.34116 4.51800 4.59302 4.76002 4.87365 4.95425 4.97592 5.10852 5.20224 5.22698 5.27944 5.40132 5.46429 5.53522 5.65980 5.74792 5.85539 5.91925 5.96863 6.02020 6.08851 6.17458 6.18584 6.27519 6.29156 6.37612 6.56939 6.65531 6.71604 6.95389 7.25824 7.28227 7.62725 7.66208 7.72404 7.72479 7.83630 8.00841 8.45175 9.23047 9.86521 10.45105 11.32126 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.001546 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.956162 B =18111.306863 C =18583.152561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.531 5.531 4 C 0.251 3.749 5 C -0.050 4.050 6 C 0.521 3.479 7 O -0.533 6.533 8 N -0.726 5.726 9 C 0.122 3.878 10 C -0.128 4.128 11 C 0.058 3.942 12 N -0.533 5.533 13 C 0.033 3.967 14 C 0.178 3.822 15 N -0.595 5.595 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.149 3.851 25 C 0.045 3.955 26 N -0.304 5.304 27 N -0.482 5.482 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.404 0.596 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.088 0.912 45 H 0.254 0.746 46 H 0.025 0.975 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.797 -13.093 -9.688 30.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.005 3.995 3 N -0.260 5.260 4 C -0.032 4.032 5 C -0.092 4.092 6 C 0.305 3.695 7 O -0.409 6.409 8 N -0.379 5.379 9 C -0.002 4.002 10 C -0.166 4.166 11 C -0.071 4.071 12 N -0.258 5.258 13 C -0.096 4.096 14 C 0.052 3.948 15 N -0.319 5.319 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.022 3.978 25 C -0.085 4.085 26 N -0.133 5.133 27 N -0.200 5.200 28 H 0.285 0.715 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.238 0.762 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -25.613 -13.037 -9.422 30.245 hybrid contribution 1.007 -1.389 0.510 1.789 sum -24.606 -14.426 -8.912 29.883 Atomic orbital electron populations 1.20403 0.83547 1.05185 1.04538 1.24381 0.96643 0.82736 0.95707 1.70297 1.01238 1.29584 1.24922 1.23232 0.92642 0.89734 0.97634 1.19903 0.93935 0.99115 0.96287 1.20156 0.80058 0.78706 0.90572 1.90739 1.52728 1.51249 1.46147 1.45926 1.33224 1.49145 1.09593 1.21346 0.97459 0.99228 0.82146 1.21800 0.96736 0.99485 0.98566 1.21941 0.94694 0.95185 0.95253 1.61953 1.04992 1.36308 1.22521 1.22956 0.91504 0.97515 0.97672 1.20861 0.94616 0.92186 0.87133 1.44107 1.02625 1.64334 1.20803 1.19161 0.82522 1.45427 0.91090 0.91719 1.25008 0.97934 1.00772 0.95971 1.70018 1.28964 1.51763 1.04107 0.86369 0.83963 0.78433 0.78005 1.21146 1.21613 1.20899 1.20973 0.87394 0.93065 0.96388 1.22611 0.99023 0.98515 0.88326 1.77982 0.96768 1.12196 1.26363 1.47930 1.04225 1.10054 1.57812 0.71458 0.88925 0.89821 0.88229 0.85777 0.86251 0.76183 0.91378 0.91623 0.90941 0.90266 0.91197 0.95361 0.95811 0.91953 0.95608 0.89440 0.93596 0.95679 0.92665 0.92030 0.95473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 36.00 0.38 0.12 16 2 C 0.28 2.36 8.24 -155.69 -1.28 1.08 16 3 N -0.53 -6.15 11.19 -8.16 -0.09 -6.24 16 4 C 0.25 2.93 6.63 -156.86 -1.04 1.89 16 5 C -0.05 -0.43 6.33 -29.03 -0.18 -0.61 16 6 C 0.52 5.97 7.82 -10.99 -0.09 5.89 16 7 O -0.53 -8.58 16.03 5.56 0.09 -8.49 16 8 N -0.73 -6.79 5.56 -60.30 -0.33 -7.12 16 9 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 10 C -0.13 -1.43 5.26 -26.73 -0.14 -1.57 16 11 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 12 N -0.53 -9.30 4.63 -234.31 -1.08 -10.38 16 13 C 0.03 0.63 5.46 -3.70 -0.02 0.61 16 14 C 0.18 4.28 5.42 -3.60 -0.02 4.26 16 15 N -0.60 -15.18 3.04 -172.02 -0.52 -15.71 16 16 C -0.25 -7.00 9.63 -15.06 -0.15 -7.15 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 19 N -0.90 -26.24 11.15 55.49 0.62 -25.62 16 20 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.15 3.19 6.69 -3.60 -0.02 3.16 16 25 C 0.04 0.81 5.62 -3.70 -0.02 0.79 16 26 N -0.30 -3.58 12.80 32.42 0.41 -3.16 16 27 N -0.48 -3.95 7.45 32.62 0.24 -3.70 16 28 H 0.44 1.87 8.96 -182.34 -1.63 0.23 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 2.59 8.47 -40.82 -0.35 2.25 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 40 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 41 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 43 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.09 2.33 6.12 -51.93 -0.32 2.01 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 1.14 7.96 -51.93 -0.41 0.72 16 48 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 49 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -37.70 397.98 -11.65 -49.35 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -9.24 Total: -2.13 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -2.71 Total: 10.49 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -0.76 Total: -71.93 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.70 -11.65 -49.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752343471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.444 kcal (2) G-P(sol) polarization free energy of solvation -37.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds