Wall clock time and date at job start Tue Mar 31 2020 19:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30837 * 125.96504 * 2 1 4 4 C 1.33237 * 109.82934 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52697 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47103 * 89.99977 * 5 4 3 7 7 O 1.21279 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99831 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47072 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47275 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.46961 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99937 * 294.30298 * 12 11 10 14 14 C 1.53237 * 109.34105 * 172.75282 * 13 12 11 15 15 N 1.47080 * 108.52333 * 53.82641 * 14 13 12 16 16 C 1.36937 * 120.88318 * 128.84114 * 15 14 13 17 17 H 1.07993 * 120.00033 * 206.56844 * 16 15 14 18 18 C 1.38807 * 119.99620 * 26.56170 * 16 15 14 19 19 N 1.31619 * 120.00396 * 17.02148 * 18 16 15 20 20 Si 1.86803 * 120.00042 * 197.01704 * 18 16 15 21 21 H 1.48499 * 109.47019 * 59.99907 * 20 18 16 22 22 H 1.48495 * 109.47691 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47012 * 300.00655 * 20 18 16 24 24 C 1.47076 * 118.23570 * 308.81547 * 15 14 13 25 25 C 1.46898 * 110.99710 * 170.00246 * 12 11 10 26 26 N 1.30715 * 108.95106 * 0.26254 * 4 3 2 27 27 N 1.34433 * 125.96085 * 180.02562 * 2 1 3 28 28 H 0.96997 * 126.81909 * 359.97438 * 27 2 1 29 29 H 1.09006 * 109.46854 * 89.97600 * 1 2 3 30 30 H 1.08998 * 109.47368 * 209.97719 * 1 2 3 31 31 H 1.08994 * 109.47031 * 329.98328 * 1 2 3 32 32 H 1.09007 * 109.47084 * 330.00541 * 5 4 3 33 33 H 1.09000 * 109.47780 * 210.00209 * 5 4 3 34 34 H 0.97001 * 120.00187 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47236 * 299.99499 * 9 8 6 36 36 H 1.08997 * 109.47649 * 59.99936 * 9 8 6 37 37 H 1.09000 * 109.47534 * 299.99962 * 10 9 8 38 38 H 1.09004 * 109.47439 * 59.99745 * 10 9 8 39 39 H 1.09001 * 109.46833 * 299.99997 * 11 10 9 40 40 H 1.08997 * 109.46627 * 60.00288 * 11 10 9 41 41 H 1.09009 * 109.49266 * 292.70761 * 13 12 11 42 42 H 1.08997 * 109.49830 * 52.78781 * 13 12 11 43 43 H 1.09010 * 109.62509 * 294.11984 * 14 13 12 44 44 H 1.08995 * 109.63023 * 173.53984 * 14 13 12 45 45 H 0.96999 * 120.00226 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.63311 * 291.47390 * 24 15 14 47 47 H 1.09001 * 109.79112 * 170.98659 * 24 15 14 48 48 H 1.08994 * 109.49488 * 307.20957 * 25 12 11 49 49 H 1.09001 * 109.49421 * 67.29617 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6234 -0.0013 6 6 5.1320 1.9353 1.4193 7 8 4.5145 1.4462 2.3415 8 7 6.1711 2.7577 1.6649 9 6 6.5551 3.0603 3.0459 10 6 7.7552 4.0095 3.0452 11 6 8.1559 4.3261 4.4875 12 7 9.3077 5.2379 4.4867 13 6 10.4959 4.5846 3.9216 14 6 11.6190 5.6162 3.7712 15 7 11.8286 6.2716 5.0711 16 6 13.0799 6.3593 5.6204 17 1 13.1956 6.4304 6.6918 18 6 14.1997 6.3566 4.8000 19 7 14.0739 6.6062 3.5139 20 14 15.8852 5.9987 5.5215 21 1 15.8849 4.6453 6.1325 22 1 16.9067 6.0562 4.4453 23 1 16.2039 7.0107 6.5605 24 6 10.6587 6.8309 5.7651 25 6 9.5734 5.7514 5.8372 26 7 3.6195 -0.6169 -0.0066 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 4.4699 2.5469 -0.5151 33 1 5.5741 1.1508 -0.5155 34 1 6.6652 3.1485 0.9274 35 1 5.7183 3.5325 3.5606 36 1 6.8231 2.1369 3.5593 37 1 8.5919 3.5370 2.5307 38 1 7.4877 4.9330 2.5317 39 1 7.3190 4.7989 5.0016 40 1 8.4233 3.4028 5.0013 41 1 10.8228 3.7856 4.5872 42 1 10.2517 4.1676 2.9446 43 1 11.3350 6.3607 3.0273 44 1 12.5364 5.1161 3.4611 45 1 14.8564 6.6047 2.9407 46 1 10.2825 7.6921 5.2130 47 1 10.9388 7.1363 6.7733 48 1 8.6602 6.1807 6.2493 49 1 9.9132 4.9362 6.4760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752343471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:13 Heat of formation + Delta-G solvation = 45.111314 kcal Electronic energy + Delta-G solvation = -27902.183708 eV Core-core repulsion = 23900.386082 eV Total energy + Delta-G solvation = -4001.797626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.18790 -40.70412 -39.74668 -37.06005 -35.81416 -34.71195 -33.66555 -33.37328 -32.20273 -31.61847 -30.72636 -28.79560 -28.25366 -25.92963 -24.49548 -24.08965 -22.79219 -22.21610 -21.95466 -20.95998 -20.78180 -18.92894 -18.72203 -18.18934 -17.32840 -16.95885 -16.78024 -16.53598 -16.14004 -15.99712 -15.53074 -15.35613 -15.26619 -15.16432 -14.94405 -14.53946 -14.50375 -14.47290 -13.67209 -13.63022 -13.47485 -13.35103 -13.04499 -12.91701 -12.80763 -12.73615 -12.59532 -12.51731 -12.31782 -12.07403 -11.93754 -11.75478 -11.47705 -11.36598 -11.26565 -11.12908 -10.94724 -10.57082 -10.48163 -10.12041 -9.25054 -8.66591 -7.86909 -5.31176 0.54532 1.46995 1.49072 1.56101 1.58401 1.61569 1.72963 2.30069 2.51415 2.98554 3.05067 3.28380 3.52309 3.70323 3.79629 3.92952 3.97571 4.10215 4.20598 4.36131 4.38670 4.40653 4.42348 4.50158 4.63817 4.66357 4.69132 4.70038 4.71439 4.75116 4.82741 4.90858 5.04686 5.05297 5.17426 5.21969 5.23584 5.27708 5.34455 5.39788 5.43979 5.61665 5.70750 6.18745 6.20396 6.30253 6.38710 6.52400 7.04513 7.14613 7.21122 7.85439 8.39331 9.19681 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.001546 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.956162 B =18111.306863 C =18583.152561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.569 5.569 4 C 0.234 3.766 5 C -0.046 4.046 6 C 0.520 3.480 7 O -0.585 6.585 8 N -0.713 5.713 9 C 0.130 3.870 10 C -0.114 4.114 11 C 0.059 3.941 12 N -0.539 5.539 13 C 0.049 3.951 14 C 0.185 3.815 15 N -0.615 5.615 16 C -0.268 4.268 17 H 0.066 0.934 18 C -0.049 4.049 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.276 1.276 24 C 0.143 3.857 25 C 0.054 3.946 26 N -0.340 5.340 27 N -0.476 5.476 28 H 0.455 0.545 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.420 0.580 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.028 0.972 41 H 0.013 0.987 42 H 0.088 0.912 43 H 0.001 0.999 44 H 0.055 0.945 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.412 -13.818 -9.898 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 N -0.299 5.299 4 C -0.049 4.049 5 C -0.088 4.088 6 C 0.306 3.694 7 O -0.465 6.465 8 N -0.366 5.366 9 C 0.006 3.994 10 C -0.152 4.152 11 C -0.069 4.069 12 N -0.264 5.264 13 C -0.080 4.080 14 C 0.059 3.941 15 N -0.339 5.339 16 C -0.398 4.398 17 H 0.083 0.917 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.201 1.201 24 C 0.017 3.983 25 C -0.075 4.075 26 N -0.170 5.170 27 N -0.196 5.196 28 H 0.303 0.697 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.258 0.742 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.106 0.894 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -27.246 -13.768 -9.642 32.014 hybrid contribution 1.410 -1.139 0.588 1.905 sum -25.837 -14.907 -9.054 31.172 Atomic orbital electron populations 1.20648 0.80110 1.06364 1.06239 1.25253 0.98323 0.82043 0.93621 1.70301 1.01682 1.31281 1.26676 1.23744 0.93552 0.90132 0.97511 1.20040 0.94063 1.00080 0.94615 1.20630 0.79589 0.77957 0.91202 1.90713 1.54555 1.53341 1.47861 1.45801 1.32688 1.48400 1.09693 1.21157 0.96994 0.98477 0.82798 1.21644 0.96738 0.99756 0.97050 1.22025 0.93372 0.94491 0.97045 1.61905 1.05078 1.37318 1.22123 1.22635 0.90839 0.95430 0.99067 1.20642 0.95006 0.92296 0.86185 1.44401 1.03140 1.65110 1.21287 1.19499 0.83905 1.44990 0.91368 0.91672 1.25762 1.01344 1.01007 0.96356 1.70174 1.29586 1.52967 1.05262 0.85342 0.79556 0.78337 0.77203 1.20632 1.21810 1.20129 1.21129 0.87186 0.94015 0.95925 1.22465 0.99048 0.97226 0.88756 1.77864 0.98850 1.12633 1.27628 1.47878 1.03305 1.11020 1.57409 0.69683 0.86781 0.87166 0.88446 0.83291 0.83784 0.74243 0.91842 0.92738 0.90911 0.89655 0.89539 0.95377 0.96857 0.89383 0.98101 0.92625 0.94015 0.96453 0.92312 0.88708 0.96139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.29 4.46 8.24 138.22 1.14 5.60 16 3 N -0.57 -12.88 11.19 -179.73 -2.01 -14.90 16 4 C 0.23 5.35 6.63 138.63 0.92 6.27 16 5 C -0.05 -0.74 6.33 29.10 0.18 -0.55 16 6 C 0.52 11.44 7.82 87.66 0.69 12.13 16 7 O -0.58 -18.89 16.03 -3.03 -0.05 -18.94 16 8 N -0.71 -12.04 5.56 -463.07 -2.57 -14.61 16 9 C 0.13 2.58 5.67 86.38 0.49 3.07 16 10 C -0.11 -2.27 5.26 30.60 0.16 -2.11 16 11 C 0.06 1.46 4.96 86.31 0.43 1.88 16 12 N -0.54 -17.80 4.63 -895.24 -4.14 -21.95 16 13 C 0.05 1.86 5.46 86.38 0.47 2.34 16 14 C 0.18 9.05 5.42 86.35 0.47 9.52 16 15 N -0.62 -31.76 3.04 -698.13 -2.12 -33.88 16 16 C -0.27 -15.02 9.63 84.03 0.81 -14.21 16 17 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 18 C -0.05 -2.78 4.94 84.86 0.42 -2.36 16 19 N -0.93 -55.51 11.15 21.65 0.24 -55.27 16 20 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.14 6.09 6.69 86.35 0.58 6.66 16 25 C 0.05 1.86 5.62 86.39 0.49 2.34 16 26 N -0.34 -7.91 12.80 -51.34 -0.66 -8.56 16 27 N -0.48 -7.44 7.45 -50.70 -0.38 -7.82 16 28 H 0.45 3.41 8.96 -213.10 -1.91 1.50 16 29 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.15 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.42 4.33 8.47 -92.71 -0.79 3.55 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.48 6.40 -2.39 -0.02 1.46 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.90 7.97 -2.39 -0.02 1.88 16 40 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 41 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.09 2.84 6.16 -2.39 -0.01 2.83 16 43 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 44 H 0.06 3.06 6.12 -2.39 -0.01 3.04 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 48 H 0.09 2.64 7.99 -2.39 -0.02 2.62 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -84.28 397.98 -3.40 -87.67 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -1.72 Total: 10.06 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 7.99 Total: 31.00 kcal Atomic # 7 Polarization: -145.35 SS G_CDS: -11.64 Total: -156.99 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -84.28 -3.40 -87.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752343471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.785 kcal (2) G-P(sol) polarization free energy of solvation -84.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds