Wall clock time and date at job start Tue Mar 31 2020 20:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47256 * 2 1 4 4 C 1.53000 * 109.46995 * 239.99969 * 2 1 3 5 5 N 1.46498 * 109.47071 * 120.00065 * 2 1 3 6 6 N 1.28716 * 125.31914 * 240.03595 * 5 2 1 7 7 N 1.28984 * 108.98989 * 179.69177 * 6 5 2 8 8 C 1.34187 * 107.24903 * 0.43366 * 7 6 5 9 9 C 1.48005 * 126.69758 * 179.83267 * 8 7 6 10 10 O 1.21541 * 119.99618 * 186.19373 * 9 8 7 11 11 N 1.34777 * 120.00226 * 6.19794 * 9 8 7 12 12 C 1.46928 * 120.62776 * 354.96405 * 11 9 8 13 13 C 1.53195 * 108.77397 * 126.37224 * 12 11 9 14 14 C 1.53038 * 109.31077 * 54.63447 * 13 12 11 15 15 C 1.53034 * 109.53927 * 298.63444 * 14 13 12 16 16 H 1.09010 * 109.52668 * 301.39886 * 15 14 13 17 17 C 1.53002 * 109.49763 * 181.31854 * 15 14 13 18 18 N 1.46509 * 109.47183 * 175.16070 * 17 15 14 19 19 C 1.36931 * 119.99954 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00391 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00295 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99921 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47446 * 269.99952 * 23 21 19 25 25 H 1.48501 * 109.47233 * 30.00140 * 23 21 19 26 26 H 1.48498 * 109.47244 * 149.99633 * 23 21 19 27 27 C 1.46921 * 120.63334 * 174.94484 * 11 9 8 28 28 N 1.28866 * 125.32316 * 60.00314 * 5 2 1 29 29 H 1.09003 * 109.47514 * 300.00121 * 1 2 3 30 30 H 1.09000 * 109.47469 * 60.00317 * 1 2 3 31 31 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46974 * 300.00169 * 3 2 1 34 34 H 1.08994 * 109.47060 * 59.99773 * 3 2 1 35 35 H 1.09002 * 109.47351 * 299.99812 * 4 2 1 36 36 H 1.09007 * 109.47096 * 59.99916 * 4 2 1 37 37 H 1.09004 * 109.47106 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.58516 * 246.15987 * 12 11 9 39 39 H 1.09001 * 109.58481 * 6.44745 * 12 11 9 40 40 H 1.09001 * 109.49591 * 174.58741 * 13 12 11 41 41 H 1.09000 * 109.49733 * 294.65007 * 13 12 11 42 42 H 1.09008 * 109.45624 * 178.61420 * 14 13 12 43 43 H 1.08996 * 109.46169 * 58.66108 * 14 13 12 44 44 H 1.09001 * 109.47476 * 55.16643 * 17 15 14 45 45 H 1.09001 * 109.46936 * 295.16162 * 17 15 14 46 46 H 0.96998 * 119.99396 * 0.02562 * 18 17 15 47 47 H 0.97004 * 120.00025 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58757 * 113.83752 * 27 11 9 49 49 H 1.09007 * 109.70408 * 353.48848 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1961 6 7 2.7609 -0.1660 2.1073 7 7 2.9973 -1.0499 3.0164 8 6 2.3772 -2.1800 2.6435 9 6 2.3693 -3.4670 3.3743 10 8 1.8602 -4.4488 2.8703 11 7 2.9267 -3.5503 4.5986 12 6 3.6420 -2.4036 5.1750 13 6 3.0524 -2.0980 6.5555 14 6 3.0960 -3.3630 7.4157 15 6 2.2498 -4.4569 6.7605 16 1 1.2239 -4.1057 6.6482 17 6 2.2673 -5.7103 7.6378 18 7 1.3660 -6.7162 7.0703 19 6 1.2175 -7.9291 7.6884 20 1 1.7645 -8.1440 8.5945 21 6 0.3639 -8.8824 7.1504 22 7 0.2208 -10.0480 7.7448 23 14 -0.5817 -8.5110 5.5828 24 1 -1.8885 -7.8956 5.9270 25 1 0.2025 -7.5705 4.7427 26 1 -0.8106 -9.7718 4.8324 27 6 2.8302 -4.7892 5.3824 28 7 1.7710 -1.9181 1.5009 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 4.7000 -2.6457 5.2749 39 1 3.5253 -1.5361 4.5253 40 1 3.6362 -1.3119 7.0345 41 1 2.0195 -1.7680 6.4450 42 1 2.6996 -3.1419 8.4068 43 1 4.1267 -3.7059 7.5053 44 1 1.9376 -5.4538 8.6446 45 1 3.2801 -6.1113 7.6782 46 1 0.8750 -6.5233 6.2563 47 1 -0.3754 -10.7143 7.3686 48 1 3.8221 -5.2259 5.4992 49 1 2.1772 -5.4972 4.8718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752799228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:05 Heat of formation + Delta-G solvation = 116.981220 kcal Electronic energy + Delta-G solvation = -29904.251632 eV Core-core repulsion = 25905.570519 eV Total energy + Delta-G solvation = -3998.681113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.76068 -40.19231 -38.15999 -37.68400 -35.15624 -33.88152 -33.20061 -32.50136 -31.71530 -30.15696 -28.29075 -28.19095 -26.78020 -25.73665 -24.91257 -24.14953 -22.84872 -21.33885 -21.11961 -20.61742 -19.45931 -17.82839 -17.71642 -17.40164 -16.98742 -16.26550 -15.32777 -15.11386 -14.90510 -14.72420 -14.67382 -14.31139 -14.18106 -13.91179 -13.57338 -13.34913 -13.16419 -13.07263 -12.96485 -12.89748 -12.57573 -12.53851 -12.48747 -12.39183 -12.16695 -11.91719 -11.60687 -11.47442 -11.32223 -11.19151 -10.92765 -10.76909 -10.67497 -10.57398 -10.44228 -10.26657 -10.06839 -9.89212 -9.49879 -8.84144 -8.64701 -7.16400 -5.70067 -3.05529 0.75258 1.18761 1.31333 2.56929 2.98094 3.47630 3.54225 3.54539 3.56671 3.66208 3.86583 3.97386 4.23036 4.61738 4.68173 4.78881 4.79880 4.80310 4.90154 4.96177 4.96462 5.00039 5.01399 5.02200 5.13288 5.18753 5.35724 5.36006 5.45613 5.50993 5.54440 5.61762 5.72977 5.77561 5.84736 5.86062 5.91558 6.03874 6.09389 6.17427 6.34118 6.37186 6.54718 6.70266 6.80128 7.22423 7.79659 8.02731 8.05621 8.48903 9.28043 10.00928 10.20174 11.48162 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002893 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.290701 B = 9676.816095 C =11080.101862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.153 4.153 4 C -0.161 4.161 5 N -0.122 5.122 6 N -0.058 5.058 7 N -0.260 5.260 8 C 0.139 3.861 9 C 0.608 3.392 10 O -0.505 6.505 11 N -0.586 5.586 12 C 0.067 3.933 13 C -0.129 4.129 14 C -0.113 4.113 15 C -0.111 4.111 16 H 0.074 0.926 17 C 0.165 3.835 18 N -0.757 5.757 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.935 5.935 23 Si 0.879 3.121 24 H -0.285 1.285 25 H -0.272 1.272 26 H -0.290 1.290 27 C 0.120 3.880 28 N -0.244 5.244 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.030 0.970 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.077 0.923 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 29.078 -16.638 34.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.095 3.905 3 C -0.211 4.211 4 C -0.219 4.219 5 N -0.037 5.037 6 N -0.050 5.050 7 N -0.133 5.133 8 C -0.145 4.145 9 C 0.389 3.611 10 O -0.376 6.376 11 N -0.319 5.319 12 C -0.057 4.057 13 C -0.168 4.168 14 C -0.151 4.151 15 C -0.131 4.131 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.403 5.403 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.709 3.291 24 H -0.212 1.212 25 H -0.197 1.197 26 H -0.217 1.217 27 C -0.001 4.001 28 N -0.097 5.097 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.195 0.805 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.135 28.951 -16.914 34.086 hybrid contribution -0.828 -0.347 -0.897 1.269 sum 5.308 28.603 -17.811 34.111 Atomic orbital electron populations 1.22273 0.90469 1.04971 1.04269 1.21558 0.96482 0.93087 0.79333 1.22112 1.03216 0.91241 1.04518 1.22273 1.02515 1.02264 0.94897 1.50733 1.29519 1.05424 1.18068 1.78876 1.08151 1.22537 0.95409 1.75672 1.20651 0.98456 1.18549 1.25395 0.99228 0.96904 0.93004 1.16255 0.79779 0.83680 0.81364 1.90898 1.44897 1.35168 1.66629 1.47910 1.53120 1.15800 1.15047 1.22836 0.95664 0.90468 0.96697 1.21865 1.01644 0.98125 0.95123 1.21542 1.00466 0.94311 0.98816 1.21764 0.99920 0.96877 0.94538 0.90762 1.20624 0.94151 0.86802 0.94669 1.42783 1.52669 1.14853 1.30036 1.19039 1.21707 0.89390 1.07190 0.89189 1.24651 0.99825 0.95985 0.98561 1.69706 1.41490 1.06068 1.41039 0.86624 0.80570 0.77390 0.84557 1.21153 1.19749 1.21679 1.21882 1.02680 0.84491 0.91097 1.75031 1.20789 0.98778 1.15067 0.91222 0.88855 0.90110 0.90469 0.89015 0.90449 0.90106 0.88874 0.91246 0.91148 0.84702 0.90611 0.91826 0.91300 0.91453 0.94998 0.95249 0.80537 0.93115 0.90465 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.66 37.15 0.32 -0.49 16 2 C 0.18 1.05 1.30 -131.82 -0.17 0.88 16 3 C -0.15 -0.57 7.90 37.16 0.29 -0.27 16 4 C -0.16 -0.78 8.66 37.16 0.32 -0.46 16 5 N -0.12 -1.26 3.72 0.52 0.00 -1.26 16 6 N -0.06 -0.65 12.21 60.35 0.74 0.09 16 7 N -0.26 -3.30 8.90 32.10 0.29 -3.01 16 8 C 0.14 2.02 7.89 -156.25 -1.23 0.79 16 9 C 0.61 10.18 7.71 -12.26 -0.09 10.09 16 10 O -0.50 -10.30 16.54 5.33 0.09 -10.21 16 11 N -0.59 -8.70 2.97 -173.82 -0.52 -9.21 16 12 C 0.07 0.77 6.33 -3.71 -0.02 0.75 16 13 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 14 C -0.11 -1.36 5.17 -26.69 -0.14 -1.50 16 15 C -0.11 -1.75 2.38 -90.50 -0.21 -1.96 16 16 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 17 C 0.17 3.20 5.65 -4.04 -0.02 3.17 16 18 N -0.76 -18.61 5.18 -59.90 -0.31 -18.92 16 19 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -30.21 13.97 55.49 0.78 -29.44 16 23 Si 0.88 23.42 27.73 -169.99 -4.71 18.71 16 24 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.27 -7.05 6.52 56.52 0.37 -6.68 16 26 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 27 C 0.12 1.96 5.50 -3.72 -0.02 1.94 16 28 N -0.24 -3.30 11.85 32.11 0.38 -2.92 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.10 8.14 -51.92 -0.42 -0.32 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.19 8.14 -51.92 -0.42 -0.24 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.14 1.57 3.67 -117.03 -0.43 1.14 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.36 8.92 4.75 -40.82 -0.19 8.72 16 47 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 48 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.10 1.96 6.24 -51.92 -0.32 1.64 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -36.25 390.59 -6.93 -43.18 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.15 Total: 2.91 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.40 Total: 4.21 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 1.35 Total: -64.68 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.71 Total: 18.71 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.25 -6.93 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752799228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.162 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds