Wall clock time and date at job start Tue Mar 31 2020 20:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47256 * 2 1 4 4 C 1.53000 * 109.46995 * 239.99969 * 2 1 3 5 5 N 1.46498 * 109.47071 * 120.00065 * 2 1 3 6 6 N 1.28716 * 125.31914 * 240.03595 * 5 2 1 7 7 N 1.28984 * 108.98989 * 179.69177 * 6 5 2 8 8 C 1.34187 * 107.24903 * 0.43366 * 7 6 5 9 9 C 1.48005 * 126.69758 * 179.83267 * 8 7 6 10 10 O 1.21541 * 119.99618 * 186.19373 * 9 8 7 11 11 N 1.34777 * 120.00226 * 6.19794 * 9 8 7 12 12 C 1.46928 * 120.62776 * 354.96405 * 11 9 8 13 13 C 1.53195 * 108.77397 * 126.37224 * 12 11 9 14 14 C 1.53038 * 109.31077 * 54.63447 * 13 12 11 15 15 C 1.53034 * 109.53927 * 298.63444 * 14 13 12 16 16 H 1.09010 * 109.52668 * 301.39886 * 15 14 13 17 17 C 1.53002 * 109.49763 * 181.31854 * 15 14 13 18 18 N 1.46509 * 109.47183 * 175.16070 * 17 15 14 19 19 C 1.36931 * 119.99954 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00391 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00295 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99921 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47446 * 269.99952 * 23 21 19 25 25 H 1.48501 * 109.47233 * 30.00140 * 23 21 19 26 26 H 1.48498 * 109.47244 * 149.99633 * 23 21 19 27 27 C 1.46921 * 120.63334 * 174.94484 * 11 9 8 28 28 N 1.28866 * 125.32316 * 60.00314 * 5 2 1 29 29 H 1.09003 * 109.47514 * 300.00121 * 1 2 3 30 30 H 1.09000 * 109.47469 * 60.00317 * 1 2 3 31 31 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46974 * 300.00169 * 3 2 1 34 34 H 1.08994 * 109.47060 * 59.99773 * 3 2 1 35 35 H 1.09002 * 109.47351 * 299.99812 * 4 2 1 36 36 H 1.09007 * 109.47096 * 59.99916 * 4 2 1 37 37 H 1.09004 * 109.47106 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.58516 * 246.15987 * 12 11 9 39 39 H 1.09001 * 109.58481 * 6.44745 * 12 11 9 40 40 H 1.09001 * 109.49591 * 174.58741 * 13 12 11 41 41 H 1.09000 * 109.49733 * 294.65007 * 13 12 11 42 42 H 1.09008 * 109.45624 * 178.61420 * 14 13 12 43 43 H 1.08996 * 109.46169 * 58.66108 * 14 13 12 44 44 H 1.09001 * 109.47476 * 55.16643 * 17 15 14 45 45 H 1.09001 * 109.46936 * 295.16162 * 17 15 14 46 46 H 0.96998 * 119.99396 * 0.02562 * 18 17 15 47 47 H 0.97004 * 120.00025 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58757 * 113.83752 * 27 11 9 49 49 H 1.09007 * 109.70408 * 353.48848 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1961 6 7 2.7609 -0.1660 2.1073 7 7 2.9973 -1.0499 3.0164 8 6 2.3772 -2.1800 2.6435 9 6 2.3693 -3.4670 3.3743 10 8 1.8602 -4.4488 2.8703 11 7 2.9267 -3.5503 4.5986 12 6 3.6420 -2.4036 5.1750 13 6 3.0524 -2.0980 6.5555 14 6 3.0960 -3.3630 7.4157 15 6 2.2498 -4.4569 6.7605 16 1 1.2239 -4.1057 6.6482 17 6 2.2673 -5.7103 7.6378 18 7 1.3660 -6.7162 7.0703 19 6 1.2175 -7.9291 7.6884 20 1 1.7645 -8.1440 8.5945 21 6 0.3639 -8.8824 7.1504 22 7 0.2208 -10.0480 7.7448 23 14 -0.5817 -8.5110 5.5828 24 1 -1.8885 -7.8956 5.9270 25 1 0.2025 -7.5705 4.7427 26 1 -0.8106 -9.7718 4.8324 27 6 2.8302 -4.7892 5.3824 28 7 1.7710 -1.9181 1.5009 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2493 36 1 1.6765 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 4.7000 -2.6457 5.2749 39 1 3.5253 -1.5361 4.5253 40 1 3.6362 -1.3119 7.0345 41 1 2.0195 -1.7680 6.4450 42 1 2.6996 -3.1419 8.4068 43 1 4.1267 -3.7059 7.5053 44 1 1.9376 -5.4538 8.6446 45 1 3.2801 -6.1113 7.6782 46 1 0.8750 -6.5233 6.2563 47 1 -0.3754 -10.7143 7.3686 48 1 3.8221 -5.2259 5.4992 49 1 2.1772 -5.4972 4.8718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752799228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:04 Heat of formation + Delta-G solvation = 91.558204 kcal Electronic energy + Delta-G solvation = -29905.354056 eV Core-core repulsion = 25905.570519 eV Total energy + Delta-G solvation = -3999.783538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.69145 -41.41206 -39.05847 -38.66009 -36.83521 -34.91198 -34.56851 -33.58815 -33.27984 -31.80297 -28.74601 -28.56965 -28.00360 -27.10309 -25.86041 -25.20271 -24.52144 -22.69455 -22.07334 -21.78115 -20.57409 -19.68957 -18.61968 -18.57211 -17.84199 -17.50743 -16.67676 -16.47242 -16.22336 -15.80137 -15.67658 -15.33251 -15.20493 -15.14246 -14.89177 -14.39223 -14.29362 -14.20291 -13.98478 -13.84617 -13.52027 -13.38749 -13.34956 -13.24817 -13.01519 -12.87012 -12.81415 -12.68229 -12.40556 -12.25902 -12.17182 -12.15738 -11.99721 -11.89963 -11.76657 -11.71228 -11.53217 -11.42318 -11.02457 -10.99644 -9.85336 -9.30926 -8.05895 -5.37508 -0.22630 0.15878 0.57791 1.33180 1.36699 1.43230 1.46925 1.76917 2.43698 2.58378 2.84882 3.26272 3.44164 3.45516 3.53559 3.60181 3.71452 3.83058 3.89435 4.00054 4.09000 4.15950 4.31406 4.37766 4.46926 4.49633 4.53065 4.57785 4.65448 4.71265 4.71614 4.73770 4.75002 4.91973 4.99227 5.01007 5.04429 5.08275 5.11942 5.14629 5.19878 5.23492 5.32661 5.46674 5.50916 5.74425 6.04322 6.19234 6.63766 6.99359 7.05170 7.82704 7.99096 9.15671 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002893 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.290701 B = 9676.816095 C =11080.101862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.106 5.106 6 N -0.053 5.053 7 N -0.258 5.258 8 C 0.123 3.877 9 C 0.604 3.396 10 O -0.555 6.555 11 N -0.579 5.579 12 C 0.062 3.938 13 C -0.122 4.122 14 C -0.107 4.107 15 C -0.099 4.099 16 H 0.062 0.938 17 C 0.161 3.839 18 N -0.763 5.763 19 C -0.228 4.228 20 H 0.066 0.934 21 C -0.057 4.057 22 N -0.980 5.980 23 Si 0.941 3.059 24 H -0.278 1.278 25 H -0.266 1.266 26 H -0.292 1.292 27 C 0.122 3.878 28 N -0.261 5.261 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.129 0.871 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.361 0.639 47 H 0.258 0.742 48 H 0.088 0.912 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 32.925 -17.917 38.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 C -0.207 4.207 4 C -0.217 4.217 5 N -0.023 5.023 6 N -0.044 5.044 7 N -0.131 5.131 8 C -0.161 4.161 9 C 0.386 3.614 10 O -0.430 6.430 11 N -0.310 5.310 12 C -0.060 4.060 13 C -0.160 4.160 14 C -0.145 4.145 15 C -0.119 4.119 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.408 5.408 19 C -0.359 4.359 20 H 0.084 0.916 21 C -0.249 4.249 22 N -0.631 5.631 23 Si 0.770 3.230 24 H -0.204 1.204 25 H -0.191 1.191 26 H -0.219 1.219 27 C 0.000 4.000 28 N -0.115 5.115 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.194 0.806 47 H 0.067 0.933 48 H 0.106 0.894 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.920 32.887 -18.170 38.204 hybrid contribution -0.993 -1.421 -0.513 1.808 sum 5.927 31.466 -18.682 37.071 Atomic orbital electron populations 1.22319 0.89582 1.04048 1.05789 1.22241 0.97273 0.94221 0.78168 1.22184 1.02985 0.89462 1.06025 1.22318 1.02227 1.01441 0.95698 1.51286 1.28131 1.04455 1.18451 1.78803 1.08168 1.22037 0.95404 1.75630 1.20600 0.97853 1.19045 1.24955 1.00812 0.96659 0.93644 1.16550 0.79163 0.83941 0.81730 1.90857 1.47217 1.36994 1.67952 1.47985 1.52515 1.16152 1.14377 1.23112 0.96381 0.89263 0.97197 1.21850 1.01773 0.98169 0.94176 1.21535 1.00406 0.93378 0.99166 1.21632 1.00217 0.96303 0.93703 0.91975 1.20843 0.93131 0.87131 0.95378 1.42881 1.53562 1.14478 1.29922 1.19078 1.19989 0.90814 1.06002 0.91623 1.25338 1.01610 0.96075 1.01868 1.69849 1.43021 1.07260 1.42963 0.85611 0.79415 0.77051 0.80937 1.20441 1.19120 1.21869 1.21717 1.02363 0.84742 0.91186 1.74995 1.21139 1.00372 1.14978 0.91800 0.85216 0.92226 0.90853 0.85511 0.90921 0.92193 0.85238 0.91702 0.89189 0.84412 0.87234 0.92648 0.90111 0.89960 0.94488 0.94615 0.80587 0.93308 0.89412 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.66 71.98 0.62 -0.67 16 2 C 0.16 1.60 1.30 3.60 0.00 1.60 16 3 C -0.15 -0.66 7.90 71.98 0.57 -0.09 16 4 C -0.16 -1.24 8.66 71.98 0.62 -0.61 16 5 N -0.11 -2.09 3.72 -152.27 -0.57 -2.66 16 6 N -0.05 -1.11 12.21 37.02 0.45 -0.66 16 7 N -0.26 -6.27 8.90 -52.37 -0.47 -6.73 16 8 C 0.12 3.57 7.89 137.15 1.08 4.65 16 9 C 0.60 20.60 7.71 86.83 0.67 21.27 16 10 O -0.55 -23.66 16.54 -3.84 -0.06 -23.73 16 11 N -0.58 -16.87 2.97 -822.13 -2.44 -19.32 16 12 C 0.06 1.30 6.33 86.36 0.55 1.84 16 13 C -0.12 -2.19 6.08 30.67 0.19 -2.00 16 14 C -0.11 -2.25 5.17 30.62 0.16 -2.09 16 15 C -0.10 -2.99 2.38 -10.72 -0.03 -3.02 16 16 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 17 C 0.16 6.12 5.65 86.38 0.49 6.61 16 18 N -0.76 -37.63 5.18 -343.44 -1.78 -39.41 16 19 C -0.23 -13.49 10.47 84.03 0.88 -12.61 16 20 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 21 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 22 N -0.98 -64.85 13.97 21.65 0.30 -64.55 16 23 Si 0.94 49.58 27.73 68.60 1.90 51.48 16 24 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.27 -13.60 6.52 99.48 0.65 -12.95 16 26 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 27 C 0.12 3.97 5.50 86.36 0.48 4.44 16 28 N -0.26 -7.09 11.85 -52.32 -0.62 -7.71 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.13 -0.30 8.14 -2.38 -0.02 -0.31 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.13 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.14 2.92 3.67 -86.56 -0.32 2.60 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.36 17.91 4.75 -92.71 -0.44 17.47 16 47 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 48 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.06 2.50 6.24 -2.38 -0.01 2.48 16 Total: -1.00 -82.03 390.59 3.61 -78.42 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.15 Total: 18.62 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 6.75 Total: 16.26 kcal Atomic # 7 Polarization: -135.92 SS G_CDS: -5.12 Total: -141.05 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.90 Total: 51.48 kcal Total: -82.03 3.61 -78.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752799228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.976 kcal (2) G-P(sol) polarization free energy of solvation -82.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds