Wall clock time and date at job start Tue Mar 31 2020 20:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46954 * 2 1 4 4 C 1.52996 * 109.46912 * 240.00364 * 2 1 3 5 5 N 1.46499 * 109.47046 * 120.00218 * 2 1 3 6 6 N 1.28719 * 125.31985 * 240.04111 * 5 2 1 7 7 N 1.28984 * 108.98807 * 179.72693 * 6 5 2 8 8 C 1.34184 * 107.25004 * 0.36979 * 7 6 5 9 9 C 1.48007 * 126.70031 * 179.89198 * 8 7 6 10 10 O 1.21535 * 120.00611 * 172.05746 * 9 8 7 11 11 N 1.34781 * 119.99597 * 352.06248 * 9 8 7 12 12 C 1.46920 * 120.63170 * 352.74388 * 11 9 8 13 13 C 1.53188 * 108.77842 * 233.88238 * 12 11 9 14 14 C 1.53035 * 109.31560 * 305.36544 * 13 12 11 15 15 C 1.53046 * 109.53572 * 61.36308 * 14 13 12 16 16 H 1.08997 * 109.50058 * 58.58794 * 15 14 13 17 17 C 1.53004 * 109.52427 * 178.66834 * 15 14 13 18 18 N 1.46496 * 109.46984 * 184.85259 * 17 15 14 19 19 C 1.36942 * 119.99938 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99684 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99863 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99543 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46933 * 90.00667 * 23 21 19 25 25 H 1.48505 * 109.46876 * 210.00008 * 23 21 19 26 26 H 1.48498 * 109.47523 * 330.00292 * 23 21 19 27 27 C 1.46926 * 120.62715 * 173.02504 * 11 9 8 28 28 N 1.28871 * 125.32166 * 59.99709 * 5 2 1 29 29 H 1.09002 * 109.46809 * 299.99696 * 1 2 3 30 30 H 1.09003 * 109.47216 * 59.99828 * 1 2 3 31 31 H 1.08995 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46921 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47724 * 300.00148 * 3 2 1 34 34 H 1.09002 * 109.47115 * 60.00491 * 3 2 1 35 35 H 1.09009 * 109.47131 * 299.99834 * 4 2 1 36 36 H 1.09003 * 109.47337 * 59.99882 * 4 2 1 37 37 H 1.08999 * 109.46790 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.58772 * 353.67294 * 12 11 9 39 39 H 1.09007 * 109.58632 * 114.09362 * 12 11 9 40 40 H 1.08996 * 109.49968 * 185.41452 * 13 12 11 41 41 H 1.09000 * 109.49430 * 65.31499 * 13 12 11 42 42 H 1.09002 * 109.45995 * 301.34923 * 14 13 12 43 43 H 1.08998 * 109.45196 * 181.37308 * 14 13 12 44 44 H 1.08993 * 109.47078 * 304.85406 * 17 15 14 45 45 H 1.09002 * 109.46690 * 64.85879 * 17 15 14 46 46 H 0.97002 * 120.00393 * 0.02562 * 18 17 15 47 47 H 0.96996 * 120.00119 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.58836 * 245.90001 * 27 11 9 49 49 H 1.08994 * 109.58770 * 6.18736 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 2.7609 -0.1661 2.1073 7 7 2.9980 -1.0502 3.0160 8 6 2.3772 -2.1800 2.6435 9 6 2.3686 -3.4669 3.3746 10 8 1.6489 -4.3727 3.0022 11 7 3.1590 -3.6343 4.4534 12 6 4.1479 -2.6124 4.8227 13 6 5.5223 -3.2778 4.9454 14 6 5.4320 -4.4486 5.9267 15 6 4.4390 -5.4854 5.3965 16 1 4.7640 -5.8321 4.4155 17 6 4.3738 -6.6712 6.3612 18 7 3.5126 -7.7132 5.7967 19 6 3.3025 -8.8766 6.4878 20 1 3.7714 -9.0257 7.4492 21 6 2.4860 -9.8637 5.9532 22 7 1.9142 -9.6817 4.7818 23 14 2.2001 -11.4510 6.8957 24 1 1.0151 -11.2965 7.7773 25 1 1.9625 -12.5600 5.9370 26 1 3.3951 -11.7583 7.7219 27 6 3.0523 -4.8450 5.2789 28 7 1.7710 -1.9181 1.5009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7215 -1.2490 38 1 4.1824 -1.8420 4.0524 39 1 3.8719 -2.1650 5.7776 40 1 6.2470 -2.5509 5.3121 41 1 5.8371 -3.6452 3.9687 42 1 5.0932 -4.0843 6.8966 43 1 6.4143 -4.9085 6.0344 44 1 5.3761 -7.0713 6.5134 45 1 3.9655 -6.3404 7.3163 46 1 3.0911 -7.5791 4.9334 47 1 1.3434 -10.3713 4.4083 48 1 2.6870 -4.5798 6.2710 49 1 2.3619 -5.5467 4.8108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752799235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:10 Heat of formation + Delta-G solvation = 111.458280 kcal Electronic energy + Delta-G solvation = -29717.750806 eV Core-core repulsion = 25718.830201 eV Total energy + Delta-G solvation = -3998.920606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.65052 -40.05034 -38.07249 -37.53020 -34.94536 -33.77052 -33.10217 -32.39191 -31.61928 -29.69665 -28.21421 -28.11846 -26.59042 -25.50322 -24.77776 -24.01803 -23.05050 -21.40441 -21.04519 -20.43117 -19.34038 -17.65976 -17.58438 -17.07741 -16.78422 -16.10118 -15.25200 -14.92693 -14.80770 -14.66334 -14.57578 -14.14855 -14.13440 -13.56156 -13.49985 -13.40104 -13.08569 -12.98374 -12.92153 -12.85708 -12.50419 -12.43551 -12.41730 -12.27388 -12.08900 -11.79371 -11.50236 -11.22517 -11.14899 -10.98252 -10.81225 -10.75596 -10.61687 -10.44661 -10.32379 -10.24295 -10.04462 -9.83423 -9.54354 -8.80357 -8.51175 -6.83289 -5.66128 -2.95895 0.85560 1.30822 1.41238 2.70933 3.10015 3.49904 3.54318 3.56602 3.62871 3.79823 3.93943 4.04741 4.33176 4.65415 4.75577 4.86546 4.86962 4.89793 5.01712 5.02874 5.05593 5.07250 5.08331 5.12418 5.25183 5.31176 5.43738 5.48156 5.52840 5.58781 5.67398 5.70675 5.86213 5.88388 5.94823 6.01007 6.04258 6.19623 6.21730 6.26545 6.46746 6.57104 6.66699 6.82528 6.94033 7.36551 7.78148 7.92094 8.15357 8.51589 9.62497 10.20771 10.54997 11.56167 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.002515 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.536623 B =11132.341331 C =12386.024930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.152 4.152 4 C -0.161 4.161 5 N -0.124 5.124 6 N -0.061 5.061 7 N -0.259 5.259 8 C 0.137 3.863 9 C 0.607 3.393 10 O -0.498 6.498 11 N -0.588 5.588 12 C 0.083 3.917 13 C -0.132 4.132 14 C -0.113 4.113 15 C -0.107 4.107 16 H 0.075 0.925 17 C 0.161 3.839 18 N -0.734 5.734 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.122 3.878 28 N -0.244 5.244 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.023 0.977 45 H 0.021 0.979 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.073 0.927 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 27.668 -10.435 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.096 3.904 3 C -0.211 4.211 4 C -0.220 4.220 5 N -0.039 5.039 6 N -0.053 5.053 7 N -0.133 5.133 8 C -0.147 4.147 9 C 0.388 3.612 10 O -0.368 6.368 11 N -0.321 5.321 12 C -0.040 4.040 13 C -0.170 4.170 14 C -0.151 4.151 15 C -0.127 4.127 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.001 3.999 28 N -0.097 5.097 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.404 27.639 -10.665 29.722 hybrid contribution -0.375 -1.308 0.361 1.408 sum 2.029 26.330 -10.304 28.347 Atomic orbital electron populations 1.22271 0.90529 1.04985 1.04170 1.21531 0.96447 0.93045 0.79402 1.22104 1.03207 0.91306 1.04433 1.22271 1.02513 1.02295 0.94877 1.50725 1.29705 1.05465 1.18030 1.78861 1.08456 1.22302 0.95678 1.75961 1.19754 0.98383 1.19199 1.25445 0.98988 0.97083 0.93141 1.16247 0.81734 0.82944 0.80269 1.90925 1.40822 1.39797 1.65255 1.47896 1.35969 1.21798 1.26440 1.22477 0.87419 0.90836 1.03239 1.21910 0.96465 0.98207 1.00442 1.21547 0.99646 0.95398 0.98537 1.21699 0.94240 0.95676 1.01051 0.90656 1.20634 0.94485 0.87548 0.94053 1.42430 1.56406 1.15804 1.23203 1.19203 1.23694 0.93322 1.01001 0.91222 1.24761 1.00370 0.98724 0.97133 1.69675 1.35816 1.34573 1.17704 0.86209 0.77858 0.83523 0.78696 1.21768 1.21840 1.20836 1.21875 0.98779 0.84888 0.94353 1.75039 1.20666 0.98723 1.15255 0.91277 0.88930 0.90067 0.90489 0.89073 0.90510 0.90073 0.88926 0.91259 0.86349 0.91062 0.90724 0.91797 0.91637 0.91506 0.95964 0.96150 0.78054 0.93502 0.90898 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 8.66 37.16 0.32 -0.56 16 2 C 0.18 1.15 1.30 -131.82 -0.17 0.98 16 3 C -0.15 -0.64 7.90 37.16 0.29 -0.35 16 4 C -0.16 -0.88 8.66 37.16 0.32 -0.56 16 5 N -0.12 -1.36 3.72 0.52 0.00 -1.36 16 6 N -0.06 -0.73 12.21 60.35 0.74 0.01 16 7 N -0.26 -3.49 9.09 32.10 0.29 -3.19 16 8 C 0.14 2.11 7.79 -156.25 -1.22 0.89 16 9 C 0.61 10.72 7.70 -12.25 -0.09 10.63 16 10 O -0.50 -10.74 16.52 5.33 0.09 -10.65 16 11 N -0.59 -9.23 2.97 -173.82 -0.52 -9.75 16 12 C 0.08 1.03 6.11 -3.72 -0.02 1.01 16 13 C -0.13 -1.50 6.08 -26.62 -0.16 -1.66 16 14 C -0.11 -1.46 5.17 -26.69 -0.14 -1.59 16 15 C -0.11 -1.80 2.37 -90.49 -0.21 -2.02 16 16 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.16 3.28 5.66 -4.04 -0.02 3.26 16 18 N -0.73 -19.20 5.38 -59.91 -0.32 -19.52 16 19 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 23 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.12 2.13 5.53 -3.71 -0.02 2.11 16 28 N -0.24 -3.49 11.86 32.11 0.38 -3.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 1.46 4.19 -63.56 -0.27 1.20 16 39 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.39 10.80 6.90 -40.82 -0.28 10.51 16 47 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.11 2.26 6.20 -51.93 -0.32 1.94 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -35.51 394.06 -7.10 -42.61 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.02 Total: 5.03 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.37 Total: 4.54 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: 1.30 Total: -65.51 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.51 -7.10 -42.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752799235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.064 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds