Wall clock time and date at job start Tue Mar 31 2020 20:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46954 * 2 1 4 4 C 1.52996 * 109.46912 * 240.00364 * 2 1 3 5 5 N 1.46499 * 109.47046 * 120.00218 * 2 1 3 6 6 N 1.28719 * 125.31985 * 240.04111 * 5 2 1 7 7 N 1.28984 * 108.98807 * 179.72693 * 6 5 2 8 8 C 1.34184 * 107.25004 * 0.36979 * 7 6 5 9 9 C 1.48007 * 126.70031 * 179.89198 * 8 7 6 10 10 O 1.21535 * 120.00611 * 172.05746 * 9 8 7 11 11 N 1.34781 * 119.99597 * 352.06248 * 9 8 7 12 12 C 1.46920 * 120.63170 * 352.74388 * 11 9 8 13 13 C 1.53188 * 108.77842 * 233.88238 * 12 11 9 14 14 C 1.53035 * 109.31560 * 305.36544 * 13 12 11 15 15 C 1.53046 * 109.53572 * 61.36308 * 14 13 12 16 16 H 1.08997 * 109.50058 * 58.58794 * 15 14 13 17 17 C 1.53004 * 109.52427 * 178.66834 * 15 14 13 18 18 N 1.46496 * 109.46984 * 184.85259 * 17 15 14 19 19 C 1.36942 * 119.99938 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99684 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99863 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99543 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46933 * 90.00667 * 23 21 19 25 25 H 1.48505 * 109.46876 * 210.00008 * 23 21 19 26 26 H 1.48498 * 109.47523 * 330.00292 * 23 21 19 27 27 C 1.46926 * 120.62715 * 173.02504 * 11 9 8 28 28 N 1.28871 * 125.32166 * 59.99709 * 5 2 1 29 29 H 1.09002 * 109.46809 * 299.99696 * 1 2 3 30 30 H 1.09003 * 109.47216 * 59.99828 * 1 2 3 31 31 H 1.08995 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46921 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47724 * 300.00148 * 3 2 1 34 34 H 1.09002 * 109.47115 * 60.00491 * 3 2 1 35 35 H 1.09009 * 109.47131 * 299.99834 * 4 2 1 36 36 H 1.09003 * 109.47337 * 59.99882 * 4 2 1 37 37 H 1.08999 * 109.46790 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.58772 * 353.67294 * 12 11 9 39 39 H 1.09007 * 109.58632 * 114.09362 * 12 11 9 40 40 H 1.08996 * 109.49968 * 185.41452 * 13 12 11 41 41 H 1.09000 * 109.49430 * 65.31499 * 13 12 11 42 42 H 1.09002 * 109.45995 * 301.34923 * 14 13 12 43 43 H 1.08998 * 109.45196 * 181.37308 * 14 13 12 44 44 H 1.08993 * 109.47078 * 304.85406 * 17 15 14 45 45 H 1.09002 * 109.46690 * 64.85879 * 17 15 14 46 46 H 0.97002 * 120.00393 * 0.02562 * 18 17 15 47 47 H 0.96996 * 120.00119 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.58836 * 245.90001 * 27 11 9 49 49 H 1.08994 * 109.58770 * 6.18736 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 2.7609 -0.1661 2.1073 7 7 2.9980 -1.0502 3.0160 8 6 2.3772 -2.1800 2.6435 9 6 2.3686 -3.4669 3.3746 10 8 1.6489 -4.3727 3.0022 11 7 3.1590 -3.6343 4.4534 12 6 4.1479 -2.6124 4.8227 13 6 5.5223 -3.2778 4.9454 14 6 5.4320 -4.4486 5.9267 15 6 4.4390 -5.4854 5.3965 16 1 4.7640 -5.8321 4.4155 17 6 4.3738 -6.6712 6.3612 18 7 3.5126 -7.7132 5.7967 19 6 3.3025 -8.8766 6.4878 20 1 3.7714 -9.0257 7.4492 21 6 2.4860 -9.8637 5.9532 22 7 1.9142 -9.6817 4.7818 23 14 2.2001 -11.4510 6.8957 24 1 1.0151 -11.2965 7.7773 25 1 1.9625 -12.5600 5.9370 26 1 3.3951 -11.7583 7.7219 27 6 3.0523 -4.8450 5.2789 28 7 1.7710 -1.9181 1.5009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7215 -1.2490 38 1 4.1824 -1.8420 4.0524 39 1 3.8719 -2.1650 5.7776 40 1 6.2470 -2.5509 5.3121 41 1 5.8371 -3.6452 3.9687 42 1 5.0932 -4.0843 6.8966 43 1 6.4143 -4.9085 6.0344 44 1 5.3761 -7.0713 6.5134 45 1 3.9655 -6.3404 7.3163 46 1 3.0911 -7.5791 4.9334 47 1 1.3434 -10.3713 4.4083 48 1 2.6870 -4.5798 6.2710 49 1 2.3619 -5.5467 4.8108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752799235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:09 Heat of formation + Delta-G solvation = 86.705588 kcal Electronic energy + Delta-G solvation = -29718.824164 eV Core-core repulsion = 25718.830201 eV Total energy + Delta-G solvation = -3999.993963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.66170 -41.37101 -38.99926 -38.63087 -36.67364 -34.87154 -34.54216 -33.50340 -33.13230 -31.44350 -28.71166 -28.55464 -27.86767 -27.02017 -25.81037 -25.17083 -24.80414 -22.74384 -21.99798 -21.68920 -20.54129 -19.17503 -18.65050 -18.49407 -17.78870 -17.45857 -16.69163 -16.50383 -16.03522 -15.58879 -15.44556 -15.28747 -15.17806 -15.14101 -15.08911 -14.30702 -14.23962 -14.08891 -13.95781 -13.76106 -13.49908 -13.33053 -13.23468 -13.02398 -12.88920 -12.85426 -12.75499 -12.64142 -12.39832 -12.16544 -12.15601 -12.13428 -11.98649 -11.91661 -11.78306 -11.68755 -11.52341 -11.34844 -11.05565 -10.94265 -9.81613 -8.99250 -7.92636 -5.23105 -0.20096 0.18813 0.60606 1.46191 1.49278 1.51829 1.57710 1.78584 2.56864 2.62600 2.87553 3.40213 3.47068 3.48731 3.61320 3.68405 3.82151 3.88164 3.93282 4.08373 4.17466 4.22714 4.33733 4.39809 4.50758 4.51060 4.55910 4.59180 4.70600 4.72754 4.72914 4.77136 4.77288 4.93512 5.00843 5.01995 5.06655 5.09750 5.10482 5.16222 5.22388 5.24426 5.34745 5.44216 5.48945 5.52630 6.08025 6.27871 6.68633 7.01263 7.33330 8.10207 8.32021 9.30923 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.002515 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.536623 B =11132.341331 C =12386.024930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.107 5.107 6 N -0.054 5.054 7 N -0.257 5.257 8 C 0.122 3.878 9 C 0.602 3.398 10 O -0.553 6.553 11 N -0.580 5.580 12 C 0.079 3.921 13 C -0.125 4.125 14 C -0.105 4.105 15 C -0.095 4.095 16 H 0.052 0.948 17 C 0.159 3.841 18 N -0.749 5.749 19 C -0.243 4.243 20 H 0.081 0.919 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.977 3.023 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.265 1.265 27 C 0.128 3.872 28 N -0.262 5.262 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.086 0.914 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 30.433 -9.891 32.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.024 5.024 6 N -0.046 5.046 7 N -0.131 5.131 8 C -0.162 4.162 9 C 0.385 3.615 10 O -0.428 6.428 11 N -0.312 5.312 12 C -0.042 4.042 13 C -0.163 4.163 14 C -0.143 4.143 15 C -0.115 4.115 16 H 0.070 0.930 17 C 0.032 3.968 18 N -0.392 5.392 19 C -0.375 4.375 20 H 0.099 0.901 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.190 1.190 27 C 0.006 3.994 28 N -0.116 5.116 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.104 0.896 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.941 30.470 -10.068 32.331 hybrid contribution -0.815 -2.011 0.125 2.173 sum 3.126 28.459 -9.943 30.307 Atomic orbital electron populations 1.22320 0.89586 1.04021 1.05786 1.22243 0.97297 0.94239 0.78159 1.22178 1.02983 0.89405 1.06014 1.22319 1.02221 1.01412 0.95747 1.51295 1.28260 1.04427 1.18425 1.78781 1.08422 1.21737 0.95631 1.75914 1.19704 0.97723 1.19716 1.24932 1.00679 0.96746 0.93814 1.16578 0.81187 0.83284 0.80474 1.90887 1.43170 1.41830 1.66936 1.47978 1.36024 1.21766 1.25458 1.22776 0.87064 0.90049 1.04330 1.21906 0.96416 0.98260 0.99687 1.21530 0.98748 0.94562 0.99486 1.21563 0.95011 0.95644 0.99241 0.92981 1.20841 0.93523 0.87404 0.94990 1.42702 1.57175 1.16649 1.22692 1.19684 1.22634 0.93994 1.01203 0.90108 1.25674 1.00904 1.02526 0.98259 1.69873 1.37161 1.35573 1.19764 0.85084 0.78182 0.78910 0.77239 1.21387 1.22436 1.18978 1.21639 0.98296 0.84956 0.94512 1.75005 1.20982 1.00419 1.15190 0.91800 0.85144 0.92304 0.90859 0.85448 0.90951 0.92313 0.85162 0.91718 0.86012 0.88901 0.86943 0.92869 0.89780 0.90200 0.95220 0.95029 0.79782 0.94171 0.89582 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.66 71.98 0.62 -0.89 16 2 C 0.16 1.83 1.30 3.60 0.00 1.84 16 3 C -0.15 -0.83 7.90 71.98 0.57 -0.27 16 4 C -0.16 -1.50 8.66 71.98 0.62 -0.87 16 5 N -0.11 -2.31 3.72 -152.26 -0.57 -2.88 16 6 N -0.05 -1.24 12.21 37.02 0.45 -0.79 16 7 N -0.26 -6.78 9.09 -52.37 -0.48 -7.26 16 8 C 0.12 3.84 7.79 137.15 1.07 4.91 16 9 C 0.60 22.53 7.70 86.83 0.67 23.20 16 10 O -0.55 -26.01 16.52 -3.83 -0.06 -26.07 16 11 N -0.58 -18.64 2.97 -822.13 -2.44 -21.08 16 12 C 0.08 1.82 6.11 86.36 0.53 2.35 16 13 C -0.12 -2.49 6.08 30.67 0.19 -2.30 16 14 C -0.11 -2.44 5.17 30.62 0.16 -2.28 16 15 C -0.09 -3.21 2.37 -10.71 -0.03 -3.23 16 16 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.16 6.46 5.66 86.38 0.49 6.95 16 18 N -0.75 -40.37 5.38 -343.46 -1.85 -42.21 16 19 C -0.24 -14.18 9.99 84.03 0.84 -13.34 16 20 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 22 N -0.97 -63.77 13.06 21.65 0.28 -63.49 16 23 Si 0.98 48.19 29.55 68.60 2.03 50.22 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 C 0.13 4.62 5.53 86.36 0.48 5.10 16 28 N -0.26 -7.74 11.86 -52.32 -0.62 -8.37 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.12 2.82 4.19 -17.43 -0.07 2.75 16 39 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 46 H 0.37 21.97 6.90 -92.71 -0.64 21.33 16 47 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 48 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 49 H 0.06 2.72 6.20 -2.39 -0.01 2.70 16 Total: -1.00 -82.22 394.06 3.67 -78.54 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.25 Total: 26.70 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.68 Total: 16.68 kcal Atomic # 7 Polarization: -140.86 SS G_CDS: -5.22 Total: -146.07 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.06 Total: -26.07 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -82.22 3.67 -78.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752799235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.249 kcal (2) G-P(sol) polarization free energy of solvation -82.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds