Wall clock time and date at job start Tue Mar 31 2020 20:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 C 1.53003 * 109.46730 * 240.00139 * 2 1 3 5 5 N 1.46504 * 109.47277 * 120.00236 * 2 1 3 6 6 N 1.28780 * 125.44519 * 359.97342 * 5 2 1 7 7 N 1.29004 * 108.72370 * 180.02562 * 6 5 2 8 8 C 1.33319 * 107.35005 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.54589 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46834 * 90.02581 * 9 8 7 11 11 O 1.21279 * 120.00484 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99793 * 180.02562 * 10 9 8 13 13 C 1.46508 * 119.99978 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47183 * 180.02562 * 13 12 10 15 15 N 1.46494 * 109.46820 * 180.02562 * 14 13 12 16 16 C 1.36942 * 120.00185 * 270.26949 * 15 14 13 17 17 H 1.07998 * 119.99768 * 140.36848 * 16 15 14 18 18 C 1.38809 * 119.99660 * 320.38127 * 16 15 14 19 19 N 1.31617 * 120.00241 * 340.41093 * 18 16 15 20 20 Si 1.86805 * 119.99916 * 160.41985 * 18 16 15 21 21 H 1.48505 * 109.47132 * 59.99562 * 20 18 16 22 22 H 1.48500 * 109.47157 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46842 * 299.99527 * 20 18 16 24 24 C 1.46505 * 120.00313 * 90.00308 * 15 14 13 25 25 C 1.52999 * 117.49997 * 183.28511 * 24 15 14 26 26 C 1.52997 * 60.00024 * 252.50685 * 25 24 15 27 27 N 1.28875 * 125.44892 * 180.30821 * 5 2 1 28 28 H 1.09001 * 109.46873 * 299.99560 * 1 2 3 29 29 H 1.08999 * 109.47462 * 59.99757 * 1 2 3 30 30 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47240 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47197 * 300.00405 * 3 2 1 33 33 H 1.09001 * 109.46934 * 60.00477 * 3 2 1 34 34 H 1.08999 * 109.47108 * 299.99900 * 4 2 1 35 35 H 1.09003 * 109.46870 * 60.00325 * 4 2 1 36 36 H 1.09002 * 109.46550 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47253 * 330.03090 * 9 8 7 38 38 H 1.08999 * 109.47499 * 210.02489 * 9 8 7 39 39 H 0.96994 * 120.00641 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46749 * 60.00110 * 13 12 10 41 41 H 1.08999 * 109.46853 * 300.00214 * 13 12 10 42 42 H 1.08998 * 109.47254 * 59.99814 * 14 13 12 43 43 H 1.09006 * 109.46724 * 299.99789 * 14 13 12 44 44 H 0.97005 * 120.00250 * 175.01025 * 19 18 16 45 45 H 1.09001 * 115.54688 * 328.99380 * 24 15 14 46 46 H 1.09003 * 117.49662 * 359.97438 * 25 24 15 47 47 H 1.09001 * 117.49538 * 145.01344 * 25 24 15 48 48 H 1.08998 * 117.50041 * 252.51595 * 26 25 24 49 49 H 1.09005 * 117.51550 * 107.48180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 1.2782 -1.2172 2.1090 7 7 2.0400 -1.7375 3.0108 8 6 3.3017 -1.5219 2.6380 9 6 4.5420 -1.9490 3.3798 10 6 4.9564 -3.3220 2.9168 11 8 4.3082 -3.8972 2.0684 12 7 6.0469 -3.9111 3.4463 13 6 6.4501 -5.2456 2.9958 14 6 7.7085 -5.6798 3.7499 15 7 8.1119 -7.0140 3.2989 16 6 7.6217 -8.1269 3.9285 17 1 7.3456 -8.9965 3.3507 18 6 7.4795 -8.1371 5.3093 19 7 8.1476 -7.2751 6.0461 20 14 6.3399 -9.3744 6.1217 21 1 6.7922 -10.7512 5.7974 22 1 6.3658 -9.1791 7.5936 23 1 4.9563 -9.1767 5.6200 24 6 9.0353 -7.1578 2.1706 25 6 9.3581 -8.5768 1.6983 26 6 10.4105 -7.7648 2.4560 27 7 3.2573 -0.8631 1.5062 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 4.3352 -1.9735 4.4497 38 1 5.3463 -1.2406 3.1813 39 1 6.5648 -3.4516 4.1256 40 1 6.6575 -5.2206 1.9260 41 1 5.6458 -5.9541 3.1935 42 1 7.5007 -5.7048 4.8196 43 1 8.5130 -4.9712 3.5525 44 1 7.9942 -7.2335 7.0030 45 1 8.9777 -6.3758 1.4134 46 1 8.8838 -9.4034 2.2274 47 1 9.5127 -8.7287 0.6301 48 1 11.2574 -7.3825 1.8863 49 1 10.6283 -8.0569 3.4834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753154171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:04 Heat of formation + Delta-G solvation = 132.582571 kcal Electronic energy + Delta-G solvation = -28878.920981 eV Core-core repulsion = 24880.916394 eV Total energy + Delta-G solvation = -3998.004588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.35435 -39.34476 -37.89854 -37.08856 -34.77491 -33.57382 -33.25905 -33.14471 -30.95602 -29.70309 -28.02235 -27.97179 -27.23812 -24.67880 -24.39250 -22.76108 -21.66335 -21.23999 -20.79583 -20.21053 -19.71561 -17.54917 -17.28864 -16.70443 -16.04583 -15.85061 -15.50630 -15.15880 -14.80975 -14.59972 -14.57265 -14.21539 -13.96009 -13.68570 -13.43500 -13.33434 -12.99091 -12.93421 -12.79884 -12.61508 -12.31692 -12.18451 -11.96342 -11.92146 -11.90517 -11.55560 -11.46382 -11.03135 -10.91167 -10.83657 -10.75667 -10.71034 -10.34158 -10.27031 -10.15315 -9.87523 -9.62210 -9.56437 -9.27742 -8.58965 -8.48865 -6.59696 -5.84848 -3.51558 1.24891 1.74418 2.15384 2.89402 3.34559 3.40772 3.44314 3.47570 3.74204 4.02486 4.08035 4.18351 4.42654 4.48263 4.89944 4.92868 4.94890 4.98943 5.02602 5.11002 5.14569 5.18564 5.19569 5.28171 5.32124 5.39561 5.47405 5.59654 5.64149 5.72188 5.87976 5.90587 6.03846 6.09879 6.19304 6.21133 6.28728 6.50489 6.51137 6.61783 6.83260 6.98006 7.07093 7.23289 7.47722 7.75978 7.86406 8.40276 8.43989 8.52985 9.08952 9.69366 10.27142 11.10751 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002279 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.995415 B =12280.616848 C =13090.455208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 C -0.157 4.157 4 C -0.159 4.159 5 N -0.132 5.132 6 N -0.065 5.065 7 N -0.276 5.276 8 C 0.190 3.810 9 C -0.046 4.046 10 C 0.515 3.485 11 O -0.540 6.540 12 N -0.717 5.717 13 C 0.099 3.901 14 C 0.142 3.858 15 N -0.547 5.547 16 C -0.262 4.262 17 H 0.065 0.935 18 C 0.017 3.983 19 N -0.883 5.883 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.119 3.881 25 C -0.195 4.195 26 C -0.219 4.219 27 N -0.297 5.297 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.399 0.601 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.033 0.967 44 H 0.256 0.744 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 19.470 -10.683 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.216 4.216 4 C -0.218 4.218 5 N -0.046 5.046 6 N -0.057 5.057 7 N -0.147 5.147 8 C -0.093 4.093 9 C -0.089 4.089 10 C 0.298 3.702 11 O -0.417 6.417 12 N -0.368 5.368 13 C -0.026 4.026 14 C 0.015 3.985 15 N -0.264 5.264 16 C -0.392 4.392 17 H 0.082 0.918 18 C -0.184 4.184 19 N -0.524 5.524 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.206 1.206 24 C 0.011 3.989 25 C -0.233 4.233 26 C -0.260 4.260 27 N -0.147 5.147 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.233 0.767 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.312 19.106 -11.230 24.444 hybrid contribution 0.250 -0.596 0.902 1.109 sum -10.062 18.510 -10.329 23.463 Atomic orbital electron populations 1.22082 0.90195 1.04690 1.04092 1.21347 0.96368 0.92609 0.79854 1.22220 1.03311 0.92166 1.03862 1.22235 1.03423 1.01244 0.94865 1.50386 1.01183 1.34978 1.18008 1.78882 1.22024 1.09251 0.95556 1.75815 1.00814 1.17852 1.20182 1.24628 0.94871 0.98162 0.91643 1.19912 0.91818 0.96354 1.00859 1.20067 0.81031 0.86759 0.82318 1.90721 1.53301 1.65348 1.32295 1.45998 1.28087 1.20059 1.42647 1.22365 1.00485 0.80887 0.98846 1.21012 0.90907 0.85495 1.01101 1.43152 1.47476 1.01940 1.33808 1.18995 1.36971 0.94788 0.88422 0.91790 1.25234 0.98320 0.98244 0.96600 1.70037 1.38361 1.38644 1.05408 0.86478 0.81428 0.81420 0.78158 1.20569 1.21481 1.20616 1.21235 0.90967 0.93959 0.92783 1.23026 1.04947 0.97277 0.98060 1.23340 0.93886 1.07778 1.00974 1.74517 1.03203 1.20732 1.16210 0.90662 0.89357 0.90546 0.90409 0.89273 0.91484 0.91242 0.89319 0.90371 0.85673 0.86107 0.76681 0.93131 0.91524 0.88296 0.94872 0.93420 0.89586 0.88403 0.90769 0.91246 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.91 37.16 0.29 -0.65 16 2 C 0.18 1.44 1.30 -131.82 -0.17 1.27 16 3 C -0.16 -0.91 8.66 37.16 0.32 -0.59 16 4 C -0.16 -1.17 8.67 37.16 0.32 -0.85 16 5 N -0.13 -1.67 3.73 0.48 0.00 -1.66 16 6 N -0.06 -0.96 12.24 60.35 0.74 -0.22 16 7 N -0.28 -4.54 12.50 32.44 0.41 -4.13 16 8 C 0.19 2.84 6.86 -156.63 -1.07 1.77 16 9 C -0.05 -0.56 6.33 -29.03 -0.18 -0.74 16 10 C 0.52 8.48 7.82 -10.98 -0.09 8.39 16 11 O -0.54 -11.48 16.03 5.56 0.09 -11.39 16 12 N -0.72 -11.33 5.56 -60.29 -0.33 -11.66 16 13 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 14 C 0.14 3.05 5.45 -4.05 -0.02 3.03 16 15 N -0.55 -13.07 2.75 -165.66 -0.45 -13.53 16 16 C -0.26 -6.90 8.47 -15.06 -0.13 -7.03 16 17 H 0.06 1.71 6.75 -52.49 -0.35 1.36 16 18 C 0.02 0.45 4.98 -17.43 -0.09 0.37 16 19 N -0.88 -24.12 11.50 55.49 0.64 -23.48 16 20 Si 0.90 21.28 29.60 -169.99 -5.03 16.25 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.12 2.52 6.56 -67.93 -0.45 2.08 16 25 C -0.19 -3.86 9.80 -26.73 -0.26 -4.12 16 26 C -0.22 -4.43 10.36 -26.73 -0.28 -4.70 16 27 N -0.30 -4.18 11.83 32.46 0.38 -3.80 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.40 5.01 8.47 -40.82 -0.35 4.67 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 42 H 0.10 2.37 5.60 -51.93 -0.29 2.08 16 43 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 45 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.10 2.12 6.47 -51.93 -0.34 1.78 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -34.34 408.30 -7.30 -41.64 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.07 Total: 5.66 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.82 Total: 0.16 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 1.38 Total: -58.48 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.34 -7.30 -41.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753154171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.227 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds