Wall clock time and date at job start Tue Mar 31 2020 20:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 C 1.53003 * 109.46730 * 240.00139 * 2 1 3 5 5 N 1.46504 * 109.47277 * 120.00236 * 2 1 3 6 6 N 1.28780 * 125.44519 * 359.97342 * 5 2 1 7 7 N 1.29004 * 108.72370 * 180.02562 * 6 5 2 8 8 C 1.33319 * 107.35005 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.54589 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46834 * 90.02581 * 9 8 7 11 11 O 1.21279 * 120.00484 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99793 * 180.02562 * 10 9 8 13 13 C 1.46508 * 119.99978 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47183 * 180.02562 * 13 12 10 15 15 N 1.46494 * 109.46820 * 180.02562 * 14 13 12 16 16 C 1.36942 * 120.00185 * 270.26949 * 15 14 13 17 17 H 1.07998 * 119.99768 * 140.36848 * 16 15 14 18 18 C 1.38809 * 119.99660 * 320.38127 * 16 15 14 19 19 N 1.31617 * 120.00241 * 340.41093 * 18 16 15 20 20 Si 1.86805 * 119.99916 * 160.41985 * 18 16 15 21 21 H 1.48505 * 109.47132 * 59.99562 * 20 18 16 22 22 H 1.48500 * 109.47157 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46842 * 299.99527 * 20 18 16 24 24 C 1.46505 * 120.00313 * 90.00308 * 15 14 13 25 25 C 1.52999 * 117.49997 * 183.28511 * 24 15 14 26 26 C 1.52997 * 60.00024 * 252.50685 * 25 24 15 27 27 N 1.28875 * 125.44892 * 180.30821 * 5 2 1 28 28 H 1.09001 * 109.46873 * 299.99560 * 1 2 3 29 29 H 1.08999 * 109.47462 * 59.99757 * 1 2 3 30 30 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47240 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47197 * 300.00405 * 3 2 1 33 33 H 1.09001 * 109.46934 * 60.00477 * 3 2 1 34 34 H 1.08999 * 109.47108 * 299.99900 * 4 2 1 35 35 H 1.09003 * 109.46870 * 60.00325 * 4 2 1 36 36 H 1.09002 * 109.46550 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47253 * 330.03090 * 9 8 7 38 38 H 1.08999 * 109.47499 * 210.02489 * 9 8 7 39 39 H 0.96994 * 120.00641 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46749 * 60.00110 * 13 12 10 41 41 H 1.08999 * 109.46853 * 300.00214 * 13 12 10 42 42 H 1.08998 * 109.47254 * 59.99814 * 14 13 12 43 43 H 1.09006 * 109.46724 * 299.99789 * 14 13 12 44 44 H 0.97005 * 120.00250 * 175.01025 * 19 18 16 45 45 H 1.09001 * 115.54688 * 328.99380 * 24 15 14 46 46 H 1.09003 * 117.49662 * 359.97438 * 25 24 15 47 47 H 1.09001 * 117.49538 * 145.01344 * 25 24 15 48 48 H 1.08998 * 117.50041 * 252.51595 * 26 25 24 49 49 H 1.09005 * 117.51550 * 107.48180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 1.2782 -1.2172 2.1090 7 7 2.0400 -1.7375 3.0108 8 6 3.3017 -1.5219 2.6380 9 6 4.5420 -1.9490 3.3798 10 6 4.9564 -3.3220 2.9168 11 8 4.3082 -3.8972 2.0684 12 7 6.0469 -3.9111 3.4463 13 6 6.4501 -5.2456 2.9958 14 6 7.7085 -5.6798 3.7499 15 7 8.1119 -7.0140 3.2989 16 6 7.6217 -8.1269 3.9285 17 1 7.3456 -8.9965 3.3507 18 6 7.4795 -8.1371 5.3093 19 7 8.1476 -7.2751 6.0461 20 14 6.3399 -9.3744 6.1217 21 1 6.7922 -10.7512 5.7974 22 1 6.3658 -9.1791 7.5936 23 1 4.9563 -9.1767 5.6200 24 6 9.0353 -7.1578 2.1706 25 6 9.3581 -8.5768 1.6983 26 6 10.4105 -7.7648 2.4560 27 7 3.2573 -0.8631 1.5062 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 4.3352 -1.9735 4.4497 38 1 5.3463 -1.2406 3.1813 39 1 6.5648 -3.4516 4.1256 40 1 6.6575 -5.2206 1.9260 41 1 5.6458 -5.9541 3.1935 42 1 7.5007 -5.7048 4.8196 43 1 8.5130 -4.9712 3.5525 44 1 7.9942 -7.2335 7.0030 45 1 8.9777 -6.3758 1.4134 46 1 8.8838 -9.4034 2.2274 47 1 9.5127 -8.7287 0.6301 48 1 11.2574 -7.3825 1.8863 49 1 10.6283 -8.0569 3.4834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753154171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:03 Heat of formation + Delta-G solvation = 108.969777 kcal Electronic energy + Delta-G solvation = -28879.944909 eV Core-core repulsion = 24880.916394 eV Total energy + Delta-G solvation = -3999.028515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -45.39276 -40.72880 -38.83613 -38.58243 -36.32761 -34.97475 -34.65404 -34.18232 -32.74138 -30.91661 -29.03309 -28.52392 -28.34740 -26.28158 -25.61741 -24.04057 -23.19579 -22.83112 -21.73874 -21.58637 -21.35372 -18.76274 -18.19102 -18.04429 -17.59565 -17.21298 -17.18591 -16.58745 -16.37150 -15.79325 -15.46589 -15.23841 -15.18824 -14.87024 -14.62950 -14.56733 -14.41454 -14.01442 -13.76043 -13.44508 -13.32272 -13.23694 -13.15600 -12.91621 -12.86338 -12.84894 -12.64917 -12.56834 -12.49786 -12.16479 -12.13942 -11.95557 -11.93453 -11.86535 -11.67215 -11.38594 -11.34946 -10.96302 -10.81613 -10.51009 -10.05545 -8.52697 -7.83153 -5.53888 0.21021 0.92245 1.04519 1.42954 1.46489 1.52208 1.59415 2.20775 2.48827 2.81318 3.14641 3.16192 3.40612 3.51820 3.54941 3.59419 3.66917 3.86047 4.20911 4.30587 4.36567 4.40891 4.42051 4.45778 4.51826 4.52472 4.53792 4.60065 4.61766 4.68414 4.71154 4.72597 4.77423 4.82358 4.95115 5.01305 5.04962 5.11004 5.21354 5.24097 5.33004 5.35658 5.46160 5.56405 5.66145 5.74390 6.44509 6.58461 7.12921 7.25320 7.32776 7.79610 8.31218 9.07198 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002279 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.995415 B =12280.616848 C =13090.455208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 C -0.151 4.151 4 C -0.156 4.156 5 N -0.119 5.119 6 N -0.080 5.080 7 N -0.312 5.312 8 C 0.174 3.826 9 C -0.036 4.036 10 C 0.515 3.485 11 O -0.592 6.592 12 N -0.705 5.705 13 C 0.122 3.878 14 C 0.150 3.850 15 N -0.566 5.566 16 C -0.267 4.267 17 H 0.053 0.947 18 C -0.024 4.024 19 N -0.905 5.905 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.286 1.286 24 C 0.100 3.900 25 C -0.187 4.187 26 C -0.210 4.210 27 N -0.302 5.302 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.418 0.582 40 H 0.046 0.954 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.254 0.746 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.103 0.897 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 21.612 -12.208 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 C -0.209 4.209 4 C -0.214 4.214 5 N -0.035 5.035 6 N -0.072 5.072 7 N -0.182 5.182 8 C -0.109 4.109 9 C -0.079 4.079 10 C 0.301 3.699 11 O -0.473 6.473 12 N -0.357 5.357 13 C -0.005 4.005 14 C 0.023 3.977 15 N -0.283 5.283 16 C -0.397 4.397 17 H 0.070 0.930 18 C -0.223 4.223 19 N -0.547 5.547 20 Si 0.774 3.226 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.212 1.212 24 C -0.008 4.008 25 C -0.225 4.225 26 C -0.250 4.250 27 N -0.153 5.153 28 H 0.089 0.911 29 H 0.145 0.855 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.255 0.745 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.129 0.871 46 H 0.091 0.909 47 H 0.127 0.873 48 H 0.122 0.878 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.075 21.268 -12.735 26.759 hybrid contribution 0.173 -1.223 1.228 1.742 sum -9.902 20.044 -11.508 25.145 Atomic orbital electron populations 1.22136 0.88736 1.04086 1.05745 1.22026 0.97663 0.93667 0.78471 1.22242 1.02674 0.90492 1.05483 1.22266 1.02465 1.00532 0.96142 1.50975 1.00676 1.33597 1.18263 1.78793 1.22307 1.09936 0.96124 1.75761 1.01733 1.19162 1.21506 1.25106 0.95252 0.98390 0.92118 1.20037 0.92034 0.93916 1.01880 1.20780 0.80005 0.87968 0.81145 1.90702 1.54839 1.67019 1.34739 1.45782 1.28367 1.18639 1.42918 1.21818 0.98330 0.82059 0.98283 1.20888 0.91952 0.85119 0.99739 1.43362 1.48485 1.02033 1.34446 1.19075 1.36673 0.95280 0.88656 0.92960 1.25753 0.99615 0.99827 0.97058 1.70115 1.39356 1.39944 1.05308 0.85695 0.79580 0.79948 0.77333 1.20282 1.21274 1.21242 1.21537 0.91050 0.95589 0.92627 1.23035 1.04027 0.95694 0.99710 1.23241 0.94634 1.07514 0.99641 1.74482 1.04002 1.20892 1.15961 0.91112 0.85550 0.92266 0.91372 0.85640 0.91830 0.93376 0.85340 0.91811 0.82935 0.82097 0.74465 0.93567 0.95356 0.90625 0.93027 0.93663 0.87108 0.90878 0.87300 0.87841 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.91 71.98 0.57 -1.03 16 2 C 0.16 2.35 1.30 3.60 0.00 2.36 16 3 C -0.15 -1.38 8.66 71.98 0.62 -0.76 16 4 C -0.16 -2.07 8.67 71.98 0.62 -1.44 16 5 N -0.12 -2.97 3.73 -152.39 -0.57 -3.54 16 6 N -0.08 -2.39 12.24 37.02 0.45 -1.93 16 7 N -0.31 -10.37 12.50 -51.26 -0.64 -11.01 16 8 C 0.17 5.14 6.86 138.55 0.95 6.09 16 9 C -0.04 -0.82 6.33 29.10 0.18 -0.64 16 10 C 0.52 16.69 7.82 87.66 0.69 17.37 16 11 O -0.59 -25.68 16.03 -3.03 -0.05 -25.73 16 12 N -0.70 -21.74 5.56 -463.04 -2.57 -24.31 16 13 C 0.12 4.85 6.00 86.38 0.52 5.37 16 14 C 0.15 6.43 5.45 86.38 0.47 6.90 16 15 N -0.57 -27.16 2.75 -678.04 -1.86 -29.02 16 16 C -0.27 -14.29 8.47 84.03 0.71 -13.58 16 17 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 18 C -0.02 -1.29 4.98 84.86 0.42 -0.87 16 19 N -0.90 -50.11 11.50 21.65 0.25 -49.86 16 20 Si 0.95 44.56 29.60 68.60 2.03 46.59 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C 0.10 4.10 6.56 44.99 0.30 4.39 16 25 C -0.19 -7.14 9.80 30.59 0.30 -6.84 16 26 C -0.21 -8.18 10.36 30.59 0.32 -7.86 16 27 N -0.30 -8.37 11.83 -51.20 -0.61 -8.98 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.16 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.42 9.79 8.47 -92.71 -0.79 9.00 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 3.67 5.60 -2.39 -0.01 3.65 16 43 H 0.05 2.00 8.07 -2.38 -0.02 1.98 16 44 H 0.25 13.64 8.32 -92.70 -0.77 12.87 16 45 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.07 3.17 6.47 -2.39 -0.02 3.16 16 47 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 48 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -78.35 408.30 3.28 -75.07 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.17 Total: 23.26 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.68 Total: 9.46 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -5.55 Total: -128.66 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -78.35 3.28 -75.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753154171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.043 kcal (2) G-P(sol) polarization free energy of solvation -78.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds