Wall clock time and date at job start Tue Mar 31 2020 19:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00387 * 2 1 4 4 C 1.52992 * 109.47569 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47234 * 179.97438 * 4 3 2 6 6 C 1.35039 * 124.88154 * 125.00114 * 5 4 3 7 7 C 1.35359 * 107.22710 * 180.02562 * 6 5 4 8 8 C 1.41510 * 105.50576 * 0.02562 * 7 6 5 9 9 C 1.47702 * 126.52096 * 180.02562 * 8 7 6 10 10 O 1.21572 * 119.99960 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00016 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99981 * 174.73789 * 11 9 8 13 13 C 1.52997 * 110.43436 * 302.99980 * 12 11 9 14 14 N 1.46503 * 109.46992 * 307.76718 * 13 12 11 15 15 C 1.36939 * 119.99899 * 174.95718 * 14 13 12 16 16 H 1.07997 * 120.00096 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99958 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99820 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00013 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47200 * 89.99629 * 19 17 15 21 21 H 1.48498 * 109.46965 * 209.99889 * 19 17 15 22 22 H 1.48502 * 109.46872 * 330.00136 * 19 17 15 23 23 C 1.54885 * 110.48727 * 180.45729 * 12 11 9 24 24 C 1.55230 * 102.59066 * 279.18774 * 23 12 11 25 25 C 1.54263 * 104.23079 * 322.08235 * 24 23 12 26 26 C 1.53871 * 106.59915 * 23.61067 * 25 24 23 27 27 N 1.28467 * 124.88521 * 305.33541 * 5 4 3 28 28 H 1.09007 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47089 * 300.00197 * 1 2 3 30 30 H 1.08999 * 109.47478 * 59.99995 * 1 2 3 31 31 H 1.08997 * 109.47034 * 59.99672 * 3 2 1 32 32 H 1.09006 * 109.47029 * 300.00337 * 3 2 1 33 33 H 1.09006 * 109.46953 * 59.99846 * 4 3 2 34 34 H 1.09000 * 109.47601 * 299.99974 * 4 3 2 35 35 H 1.07999 * 126.38651 * 0.02562 * 6 5 4 36 36 H 1.07993 * 127.25049 * 179.97438 * 7 6 5 37 37 H 0.96994 * 120.00006 * 354.45053 * 11 9 8 38 38 H 1.09005 * 109.47400 * 67.76546 * 13 12 11 39 39 H 1.08995 * 109.47435 * 187.76662 * 13 12 11 40 40 H 0.96995 * 119.99781 * 354.95822 * 14 13 12 41 41 H 0.97002 * 119.98996 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.75661 * 37.57822 * 23 12 11 43 43 H 1.09000 * 110.75604 * 160.94248 * 23 12 11 44 44 H 1.09008 * 110.47023 * 203.39563 * 24 23 12 45 45 H 1.08996 * 110.47321 * 80.77434 * 24 23 12 46 46 H 1.09003 * 110.03317 * 264.32653 * 25 24 23 47 47 H 1.08998 * 110.03515 * 142.89607 * 25 24 23 48 48 H 1.09007 * 110.03332 * 240.71670 * 26 25 24 49 49 H 1.09008 * 110.03463 * 119.28308 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0255 2.9706 0.9075 7 6 5.3348 4.2447 0.5709 8 6 4.5719 4.5257 -0.5874 9 6 4.5574 5.7942 -1.3439 10 8 5.2496 6.7258 -0.9821 11 7 3.7759 5.9193 -2.4349 12 6 3.6728 7.2112 -3.1179 13 6 3.1952 8.2924 -2.1463 14 7 1.9716 7.8424 -1.4781 15 6 1.4146 8.6029 -0.4847 16 1 1.8776 9.5342 -0.1937 17 6 0.2549 8.1768 0.1481 18 7 -0.2801 8.9075 1.1032 19 14 -0.5455 6.5656 -0.3548 20 1 0.0117 5.4593 0.4641 21 1 -2.0119 6.6524 -0.1374 22 1 -0.2725 6.3044 -1.7909 23 6 2.7132 7.1089 -4.3294 24 6 3.6162 6.4797 -5.4240 25 6 4.9936 7.1388 -5.2044 26 6 5.0295 7.6039 -3.7381 27 7 3.8737 3.4416 -0.8603 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6435 -0.8892 34 1 3.8567 0.6439 0.8908 35 1 5.4204 2.4156 1.7456 36 1 6.0189 4.9076 1.0796 37 1 3.2851 5.1529 -2.7703 38 1 3.9686 8.4787 -1.4012 39 1 2.9919 9.2111 -2.6964 40 1 1.5560 7.0058 -1.7392 41 1 -1.0903 8.6095 1.5456 42 1 1.8695 6.4580 -4.1000 43 1 2.3685 8.0972 -4.6336 44 1 3.2336 6.7171 -6.4167 45 1 3.6839 5.4003 -5.2884 46 1 5.1087 7.9940 -5.8704 47 1 5.7874 6.4143 -5.3859 48 1 5.1621 8.6849 -3.6925 49 1 5.8409 7.1051 -3.2079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753504893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:13 Heat of formation + Delta-G solvation = -12.720088 kcal Electronic energy + Delta-G solvation = -30432.866166 eV Core-core repulsion = 26396.268031 eV Total energy + Delta-G solvation = -4036.598135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.67521 -41.28061 -39.08656 -38.69998 -36.36096 -35.04367 -34.41126 -33.38220 -31.73846 -30.75285 -29.88653 -29.65849 -27.41625 -26.39620 -25.39752 -23.79590 -23.43100 -22.42407 -21.49717 -21.20181 -20.47294 -19.58295 -18.96218 -18.02939 -17.43275 -17.22108 -17.08088 -16.74734 -16.52099 -16.29514 -15.90145 -15.68409 -15.53018 -15.15995 -15.06844 -14.78545 -14.48886 -14.25770 -14.16492 -14.00373 -13.82062 -13.70297 -13.06245 -12.97522 -12.69676 -12.51428 -12.40784 -12.31637 -12.22496 -12.10702 -11.96405 -11.93451 -11.86652 -11.73094 -11.30585 -11.16723 -10.85757 -10.82662 -10.30998 -10.11819 -9.91508 -9.29718 -8.06266 -5.37797 0.52967 1.14661 1.24672 1.30102 1.34661 1.37729 2.15524 2.41626 2.47295 2.71917 3.24221 3.35988 3.42296 3.63650 3.72961 3.77386 3.83859 3.95552 3.96522 4.12358 4.16913 4.36333 4.39680 4.42200 4.49447 4.56681 4.58378 4.61033 4.64737 4.73117 4.75969 4.77377 4.81078 4.85660 4.89103 5.05706 5.12795 5.13510 5.28253 5.30276 5.33801 5.49978 5.65481 5.73824 5.79616 5.93449 6.17167 6.51057 6.87828 7.03890 7.27412 7.79382 8.02109 9.16094 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007639 B = 0.004855 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3664.542363 B = 5765.770186 C = 7413.406093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.048 3.952 4 C 0.126 3.874 5 N -0.279 5.279 6 C 0.009 3.991 7 C -0.207 4.207 8 C -0.039 4.039 9 C 0.603 3.397 10 O -0.559 6.559 11 N -0.693 5.693 12 C 0.166 3.834 13 C 0.149 3.851 14 N -0.744 5.744 15 C -0.228 4.228 16 H 0.049 0.951 17 C -0.063 4.063 18 N -0.984 5.984 19 Si 0.954 3.046 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.249 1.249 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.120 4.120 27 N -0.276 5.276 28 H 0.112 0.888 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.149 0.851 35 H 0.232 0.768 36 H 0.160 0.840 37 H 0.408 0.592 38 H 0.021 0.979 39 H 0.033 0.967 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.242 -22.035 -9.607 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.030 4.030 4 C 0.007 3.993 5 N -0.069 5.069 6 C -0.133 4.133 7 C -0.235 4.235 8 C -0.199 4.199 9 C 0.389 3.611 10 O -0.436 6.436 11 N -0.344 5.344 12 C 0.080 3.920 13 C 0.022 3.978 14 N -0.390 5.390 15 C -0.359 4.359 16 H 0.067 0.933 17 C -0.255 4.255 18 N -0.635 5.635 19 Si 0.781 3.219 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.173 1.173 23 C -0.158 4.158 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.159 4.159 27 N -0.113 5.113 28 H 0.131 0.869 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.166 0.834 35 H 0.248 0.752 36 H 0.178 0.822 37 H 0.243 0.757 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.198 0.802 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.983 -21.897 -9.998 25.693 hybrid contribution -0.699 0.099 1.029 1.248 sum 8.284 -21.798 -8.969 24.984 Atomic orbital electron populations 1.22988 0.78952 1.04496 1.00658 1.87724 1.21667 1.26264 1.95634 1.22600 0.93503 0.85574 1.01283 1.21967 0.91636 0.77111 1.08635 1.45650 1.30741 1.11774 1.18732 1.23478 0.96115 0.95559 0.98188 1.22016 1.05539 0.97586 0.98349 1.22036 1.02797 0.94103 1.00916 1.17106 0.79254 0.85063 0.79691 1.90727 1.43619 1.40308 1.68930 1.45651 1.47529 1.12772 1.28460 1.21459 0.96876 0.82158 0.91547 1.21128 0.87275 0.95339 0.94046 1.42450 1.28660 1.24845 1.43025 1.19024 1.05139 1.02038 1.09682 0.93259 1.25446 0.98981 1.02264 0.98761 1.69895 1.23474 1.41081 1.29033 0.85417 0.77413 0.79924 0.79148 1.21457 1.21551 1.17347 1.22838 0.97001 1.02809 0.93173 1.22416 0.94136 0.99899 0.98633 1.22095 0.97750 1.00923 0.94360 1.22395 0.95323 1.01507 0.96663 1.73376 1.22289 0.98087 1.17549 0.86947 0.93815 0.93622 0.93577 0.92898 0.86407 0.83356 0.75178 0.82195 0.75653 0.96054 0.94878 0.80240 0.93380 0.91329 0.89423 0.89285 0.91118 0.90203 0.91169 0.91153 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.39 -7.01 10.70 -148.98 -1.59 -8.61 16 3 C 0.05 0.91 6.04 71.98 0.43 1.34 16 4 C 0.13 1.75 6.77 86.38 0.58 2.33 16 5 N -0.28 -6.06 3.41 -347.94 -1.19 -7.24 16 6 C 0.01 0.18 11.40 83.53 0.95 1.13 16 7 C -0.21 -5.97 10.81 22.41 0.24 -5.72 16 8 C -0.04 -1.33 7.13 42.46 0.30 -1.03 16 9 C 0.60 23.32 7.06 86.74 0.61 23.94 16 10 O -0.56 -25.12 13.89 -3.94 -0.05 -25.18 16 11 N -0.69 -23.31 4.54 -421.03 -1.91 -25.22 16 12 C 0.17 5.48 0.39 4.68 0.00 5.48 16 13 C 0.15 6.57 4.72 86.38 0.41 6.98 16 14 N -0.74 -37.92 5.11 -343.45 -1.75 -39.67 16 15 C -0.23 -14.06 10.47 84.03 0.88 -13.18 16 16 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 17 C -0.06 -3.95 5.50 84.86 0.47 -3.49 16 18 N -0.98 -65.88 13.97 21.65 0.30 -65.58 16 19 Si 0.95 47.75 27.74 68.60 1.90 49.65 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 23 C -0.12 -3.20 5.67 32.00 0.18 -3.02 16 24 C -0.11 -2.21 6.80 31.79 0.22 -1.99 16 25 C -0.11 -2.34 6.80 31.32 0.21 -2.13 16 26 C -0.12 -3.46 5.68 31.32 0.18 -3.28 16 27 N -0.28 -8.08 11.36 -48.18 -0.55 -8.63 16 28 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.17 8.08 -2.38 -0.02 1.15 16 33 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.15 1.02 8.04 -2.39 -0.02 1.00 16 35 H 0.23 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.41 12.11 8.23 -92.71 -0.76 11.34 16 38 H 0.02 1.08 6.48 -2.38 -0.02 1.07 16 39 H 0.03 1.44 8.02 -2.39 -0.02 1.42 16 40 H 0.36 17.55 5.13 -92.71 -0.48 17.08 16 41 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 42 H 0.07 1.86 8.10 -2.39 -0.02 1.85 16 43 H 0.09 2.34 7.97 -2.39 -0.02 2.32 16 44 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 2.05 7.84 -2.38 -0.02 2.03 16 49 H 0.06 1.89 6.63 -2.38 -0.02 1.87 16 Total: -1.00 -84.39 397.98 1.74 -82.64 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: -0.34 Total: 38.86 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.92 Total: 8.98 kcal Atomic # 7 Polarization: -141.26 SS G_CDS: -5.10 Total: -146.35 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.65 Total: -33.79 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.65 kcal Total: -84.39 1.74 -82.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753504893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.925 kcal (2) G-P(sol) polarization free energy of solvation -84.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds