Wall clock time and date at job start Tue Mar 31 2020 19:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46866 * 2 1 4 4 C 1.50699 * 109.47499 * 119.99663 * 2 1 3 5 5 N 1.31077 * 126.65743 * 300.18135 * 4 2 1 6 6 N 1.28842 * 107.98659 * 180.23761 * 5 4 2 7 7 N 1.28736 * 109.39952 * 359.75189 * 6 5 4 8 8 N 1.29023 * 108.80767 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.43508 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46930 * 90.02923 * 9 8 7 11 11 O 1.21286 * 119.99625 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99799 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99751 * 185.20013 * 12 10 9 14 14 C 1.52993 * 109.47282 * 294.97907 * 13 12 10 15 15 C 1.53006 * 109.47236 * 54.97722 * 13 12 10 16 16 N 1.46498 * 109.47152 * 59.99668 * 15 13 12 17 17 C 1.36937 * 120.00431 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99433 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00356 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99953 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00298 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46675 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47481 * 119.99925 * 21 19 17 24 24 H 1.48496 * 109.47186 * 240.00385 * 21 19 17 25 25 C 1.53000 * 109.47162 * 174.97398 * 13 12 10 26 26 C 1.52998 * 117.49860 * 345.41555 * 25 13 12 27 27 C 1.52997 * 60.00140 * 107.48459 * 26 25 13 28 28 H 1.08996 * 109.47479 * 300.00361 * 1 2 3 29 29 H 1.08999 * 109.47040 * 60.00346 * 1 2 3 30 30 H 1.08998 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47695 * 240.00108 * 2 1 3 32 32 H 1.08999 * 109.46875 * 59.99605 * 3 2 1 33 33 H 1.09000 * 109.47100 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47008 * 299.99673 * 3 2 1 35 35 H 1.08991 * 109.47416 * 330.02819 * 9 8 7 36 36 H 1.08996 * 109.46729 * 210.02256 * 9 8 7 37 37 H 0.96996 * 120.00184 * 5.19702 * 12 10 9 38 38 H 1.09009 * 109.46952 * 300.00170 * 14 13 12 39 39 H 1.08998 * 109.47442 * 59.99506 * 14 13 12 40 40 H 1.09000 * 109.47377 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.46902 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47150 * 299.99991 * 15 13 12 43 43 H 0.97000 * 119.99909 * 0.02562 * 16 15 13 44 44 H 0.96999 * 119.99853 * 179.97438 * 20 19 17 45 45 H 1.09000 * 115.56262 * 199.71828 * 25 13 12 46 46 H 1.09001 * 117.49841 * 214.97565 * 26 25 13 47 47 H 1.09003 * 117.50125 * 359.97438 * 26 25 13 48 48 H 1.08998 * 117.49625 * 252.50762 * 27 26 25 49 49 H 1.09001 * 117.49908 * 107.49055 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4765 6 7 2.4015 -1.2267 3.2350 7 7 3.0154 -2.0914 2.5052 8 7 2.8089 -1.8092 1.2633 9 6 3.3281 -2.5427 0.1063 10 6 2.3495 -3.6195 -0.2862 11 8 1.3200 -3.7606 0.3394 12 7 2.6184 -4.4257 -1.3322 13 6 1.6187 -5.3962 -1.7850 14 6 1.3874 -6.4390 -0.6896 15 6 0.3046 -4.6723 -2.0855 16 7 0.5260 -3.6737 -3.1343 17 6 -0.5143 -2.8980 -3.5717 18 1 -1.4978 -3.0221 -3.1432 19 6 -0.3047 -1.9522 -4.5659 20 7 0.8939 -1.8013 -5.0885 21 14 -1.7235 -0.8936 -5.1621 22 1 -2.9578 -1.2569 -4.4206 23 1 -1.4067 0.5378 -4.9256 24 1 -1.9342 -1.1205 -6.6144 25 6 2.1197 -6.0907 -3.0528 26 6 3.3056 -5.4577 -3.7834 27 6 3.4963 -6.7560 -2.9968 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4427 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 4.2846 -2.9974 0.3637 36 1 3.4654 -1.8550 -0.7281 37 1 3.4738 -4.3634 -1.7853 38 1 2.3236 -6.9547 -0.4755 39 1 1.0305 -5.9442 0.2136 40 1 0.6439 -7.1613 -1.0266 41 1 -0.4390 -5.3943 -2.4228 42 1 -0.0524 -4.1774 -1.1822 43 1 1.4092 -3.5625 -3.5194 44 1 1.0403 -1.1406 -5.7834 45 1 1.3528 -6.5714 -3.6602 46 1 3.3189 -5.5219 -4.8715 47 1 3.7287 -4.5462 -3.3611 48 1 4.0450 -6.6989 -2.0567 49 1 3.6351 -7.6744 -3.5672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753525872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:32 Heat of formation + Delta-G solvation = 123.431131 kcal Electronic energy + Delta-G solvation = -31538.361824 eV Core-core repulsion = 27539.960400 eV Total energy + Delta-G solvation = -3998.401424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.04650 -40.47382 -38.04978 -36.00655 -35.28979 -34.59534 -33.59713 -31.89020 -31.22325 -30.17692 -28.65802 -27.06371 -25.82912 -24.27289 -23.75917 -23.10555 -22.34467 -22.11054 -21.24579 -20.38906 -19.13665 -18.20527 -17.57208 -17.12935 -16.39691 -15.76315 -15.51691 -15.21129 -14.99949 -14.58338 -14.42617 -14.18317 -13.74165 -13.54039 -13.29257 -13.13972 -12.78435 -12.74068 -12.54296 -12.29679 -12.14015 -12.04253 -11.76589 -11.64399 -11.54432 -11.41219 -11.21527 -11.20126 -11.07871 -10.99814 -10.90079 -10.82826 -10.73797 -10.20528 -10.05872 -10.03532 -9.86259 -9.75386 -9.58587 -8.92111 -8.82610 -6.94066 -5.83721 -3.09649 1.31347 1.89768 2.41862 2.52516 3.12530 3.36939 3.45292 3.46327 3.91081 4.01078 4.19838 4.42452 4.53510 4.59148 4.64669 4.70214 4.97166 4.98134 5.08519 5.15504 5.19935 5.33420 5.49585 5.52698 5.58148 5.62308 5.66629 5.76083 5.80875 5.81331 5.83338 6.01627 6.02379 6.05209 6.06064 6.17101 6.20282 6.23218 6.25288 6.29299 6.42766 6.43550 6.50767 6.72539 6.92209 7.49031 7.67071 8.17086 8.36134 8.76327 9.48798 10.05297 10.43146 11.39105 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008189 B = 0.005892 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.308991 B = 4751.290631 C = 7214.174569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.013 4.013 3 C -0.141 4.141 4 C 0.215 3.785 5 N -0.305 5.305 6 N -0.079 5.079 7 N -0.094 5.094 8 N -0.292 5.292 9 C 0.090 3.910 10 C 0.511 3.489 11 O -0.509 6.509 12 N -0.707 5.707 13 C 0.202 3.798 14 C -0.155 4.155 15 C 0.140 3.860 16 N -0.724 5.724 17 C -0.228 4.228 18 H 0.067 0.933 19 C -0.012 4.012 20 N -0.935 5.935 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.137 4.137 26 C -0.167 4.167 27 C -0.189 4.189 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.398 0.602 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.384 0.616 44 H 0.252 0.748 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.314 -3.758 5.041 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 C -0.199 4.199 4 C -0.063 4.063 5 N -0.154 5.154 6 N -0.073 5.073 7 N -0.079 5.079 8 N -0.092 5.092 9 C -0.036 4.036 10 C 0.294 3.706 11 O -0.384 6.384 12 N -0.362 5.362 13 C 0.117 3.883 14 C -0.213 4.213 15 C 0.012 3.988 16 N -0.369 5.369 17 C -0.360 4.360 18 H 0.085 0.915 19 C -0.207 4.207 20 N -0.584 5.584 21 Si 0.731 3.269 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.220 1.220 25 C -0.156 4.156 26 C -0.204 4.204 27 C -0.226 4.226 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.236 0.764 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.218 0.782 44 H 0.062 0.938 45 H 0.136 0.864 46 H 0.119 0.881 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.499 -3.965 6.921 11.656 hybrid contribution -0.012 0.507 -1.973 2.038 sum 8.487 -3.458 4.948 10.415 Atomic orbital electron populations 1.21752 0.91423 1.03620 1.02826 1.19844 0.98281 0.95735 0.89585 1.21830 1.00772 0.93794 1.03522 1.26197 0.93756 0.88391 0.97947 1.74943 1.19953 1.22003 0.98456 1.78533 1.06949 0.99161 1.22636 1.78802 1.20745 1.21020 0.87369 1.47786 1.34739 1.20069 1.06646 1.22025 0.98981 0.96126 0.86515 1.19977 0.87187 0.82272 0.81176 1.90754 1.25745 1.69783 1.52111 1.46041 1.19647 1.38023 1.32474 1.20143 0.88961 0.87509 0.91691 1.22098 1.01666 0.98178 0.99375 1.21119 0.92030 0.92058 0.93573 1.42221 1.10545 1.41275 1.42863 1.19256 0.90274 1.11677 1.14779 0.91452 1.24609 0.96504 1.00046 0.99585 1.69646 1.20042 1.38016 1.30732 0.86227 0.81913 0.80398 0.78402 1.20636 1.21873 1.22025 1.22403 0.91949 1.03055 0.98204 1.22900 1.01904 0.95733 0.99883 1.23041 1.00194 0.97182 1.02146 0.91860 0.90636 0.91574 0.88345 0.91327 0.92739 0.90627 0.84581 0.84155 0.76441 0.92779 0.90752 0.91645 0.95782 0.93397 0.78187 0.93780 0.86440 0.88150 0.88893 0.89135 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.18 37.16 0.34 -1.76 16 2 C -0.01 -0.18 3.26 -91.77 -0.30 -0.48 16 3 C -0.14 -1.63 9.18 37.16 0.34 -1.29 16 4 C 0.22 3.36 6.64 -155.43 -1.03 2.33 16 5 N -0.30 -5.35 12.36 32.70 0.40 -4.95 16 6 N -0.08 -1.44 13.43 60.35 0.81 -0.63 16 7 N -0.09 -1.57 13.29 60.35 0.80 -0.77 16 8 N -0.29 -4.32 2.83 -59.44 -0.17 -4.49 16 9 C 0.09 1.00 6.58 -5.19 -0.03 0.97 16 10 C 0.51 7.33 7.31 -10.98 -0.08 7.25 16 11 O -0.51 -9.43 12.67 5.55 0.07 -9.36 16 12 N -0.71 -9.00 4.49 -47.61 -0.21 -9.22 16 13 C 0.20 2.92 0.52 -131.82 -0.07 2.85 16 14 C -0.15 -2.07 8.37 37.15 0.31 -1.75 16 15 C 0.14 2.70 4.89 -4.04 -0.02 2.68 16 16 N -0.72 -16.30 5.22 -59.91 -0.31 -16.61 16 17 C -0.23 -5.94 9.99 -15.06 -0.15 -6.09 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -25.52 13.06 55.49 0.72 -24.79 16 21 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C -0.14 -1.80 4.48 -90.62 -0.41 -2.21 16 26 C -0.17 -2.02 8.98 -26.73 -0.24 -2.26 16 27 C -0.19 -1.90 9.53 -26.73 -0.25 -2.16 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.39 6.84 -51.93 -0.36 1.04 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.14 1.25 7.12 -51.93 -0.37 0.89 16 37 H 0.40 4.03 5.64 -40.82 -0.23 3.80 16 38 H 0.05 0.63 7.71 -51.92 -0.40 0.23 16 39 H 0.07 1.16 6.37 -51.93 -0.33 0.83 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 1.05 5.99 -51.93 -0.31 0.73 16 43 H 0.38 8.69 6.43 -40.82 -0.26 8.42 16 44 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 46 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.09 1.06 5.95 -51.93 -0.31 0.75 16 48 H 0.09 0.82 7.99 -51.93 -0.42 0.40 16 49 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -32.71 396.51 -6.22 -38.93 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -7.60 Total: 11.95 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.69 Total: -2.33 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 2.05 Total: -61.46 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.71 -6.22 -38.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753525872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.365 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds