Wall clock time and date at job start Tue Mar 31 2020 19:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46866 * 2 1 4 4 C 1.50699 * 109.47499 * 119.99663 * 2 1 3 5 5 N 1.31077 * 126.65743 * 300.18135 * 4 2 1 6 6 N 1.28842 * 107.98659 * 180.23761 * 5 4 2 7 7 N 1.28736 * 109.39952 * 359.75189 * 6 5 4 8 8 N 1.29023 * 108.80767 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.43508 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46930 * 90.02923 * 9 8 7 11 11 O 1.21286 * 119.99625 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99799 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99751 * 185.20013 * 12 10 9 14 14 C 1.52993 * 109.47282 * 294.97907 * 13 12 10 15 15 C 1.53006 * 109.47236 * 54.97722 * 13 12 10 16 16 N 1.46498 * 109.47152 * 59.99668 * 15 13 12 17 17 C 1.36937 * 120.00431 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99433 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00356 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99953 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00298 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46675 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47481 * 119.99925 * 21 19 17 24 24 H 1.48496 * 109.47186 * 240.00385 * 21 19 17 25 25 C 1.53000 * 109.47162 * 174.97398 * 13 12 10 26 26 C 1.52998 * 117.49860 * 345.41555 * 25 13 12 27 27 C 1.52997 * 60.00140 * 107.48459 * 26 25 13 28 28 H 1.08996 * 109.47479 * 300.00361 * 1 2 3 29 29 H 1.08999 * 109.47040 * 60.00346 * 1 2 3 30 30 H 1.08998 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47695 * 240.00108 * 2 1 3 32 32 H 1.08999 * 109.46875 * 59.99605 * 3 2 1 33 33 H 1.09000 * 109.47100 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47008 * 299.99673 * 3 2 1 35 35 H 1.08991 * 109.47416 * 330.02819 * 9 8 7 36 36 H 1.08996 * 109.46729 * 210.02256 * 9 8 7 37 37 H 0.96996 * 120.00184 * 5.19702 * 12 10 9 38 38 H 1.09009 * 109.46952 * 300.00170 * 14 13 12 39 39 H 1.08998 * 109.47442 * 59.99506 * 14 13 12 40 40 H 1.09000 * 109.47377 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.46902 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47150 * 299.99991 * 15 13 12 43 43 H 0.97000 * 119.99909 * 0.02562 * 16 15 13 44 44 H 0.96999 * 119.99853 * 179.97438 * 20 19 17 45 45 H 1.09000 * 115.56262 * 199.71828 * 25 13 12 46 46 H 1.09001 * 117.49841 * 214.97565 * 26 25 13 47 47 H 1.09003 * 117.50125 * 359.97438 * 26 25 13 48 48 H 1.08998 * 117.49625 * 252.50762 * 27 26 25 49 49 H 1.09001 * 117.49908 * 107.49055 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4765 6 7 2.4015 -1.2267 3.2350 7 7 3.0154 -2.0914 2.5052 8 7 2.8089 -1.8092 1.2633 9 6 3.3281 -2.5427 0.1063 10 6 2.3495 -3.6195 -0.2862 11 8 1.3200 -3.7606 0.3394 12 7 2.6184 -4.4257 -1.3322 13 6 1.6187 -5.3962 -1.7850 14 6 1.3874 -6.4390 -0.6896 15 6 0.3046 -4.6723 -2.0855 16 7 0.5260 -3.6737 -3.1343 17 6 -0.5143 -2.8980 -3.5717 18 1 -1.4978 -3.0221 -3.1432 19 6 -0.3047 -1.9522 -4.5659 20 7 0.8939 -1.8013 -5.0885 21 14 -1.7235 -0.8936 -5.1621 22 1 -2.9578 -1.2569 -4.4206 23 1 -1.4067 0.5378 -4.9256 24 1 -1.9342 -1.1205 -6.6144 25 6 2.1197 -6.0907 -3.0528 26 6 3.3056 -5.4577 -3.7834 27 6 3.4963 -6.7560 -2.9968 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4427 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 4.2846 -2.9974 0.3637 36 1 3.4654 -1.8550 -0.7281 37 1 3.4738 -4.3634 -1.7853 38 1 2.3236 -6.9547 -0.4755 39 1 1.0305 -5.9442 0.2136 40 1 0.6439 -7.1613 -1.0266 41 1 -0.4390 -5.3943 -2.4228 42 1 -0.0524 -4.1774 -1.1822 43 1 1.4092 -3.5625 -3.5194 44 1 1.0403 -1.1406 -5.7834 45 1 1.3528 -6.5714 -3.6602 46 1 3.3189 -5.5219 -4.8715 47 1 3.7287 -4.5462 -3.3611 48 1 4.0450 -6.6989 -2.0567 49 1 3.6351 -7.6744 -3.5672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753525872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:31 Heat of formation + Delta-G solvation = 101.594196 kcal Electronic energy + Delta-G solvation = -31539.308744 eV Core-core repulsion = 27539.960400 eV Total energy + Delta-G solvation = -3999.348344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.29045 -41.63843 -39.18040 -37.16322 -36.49124 -36.17876 -34.92346 -33.36220 -32.51350 -31.75398 -29.74687 -28.16109 -27.46159 -25.49021 -25.09041 -24.47216 -23.79044 -23.11941 -22.33605 -21.54056 -20.35880 -19.33417 -19.11881 -18.61507 -17.59927 -17.00897 -16.76656 -16.39897 -16.26127 -16.01061 -15.60251 -15.37459 -15.27851 -15.07116 -14.52419 -14.24157 -14.07344 -14.00853 -13.82811 -13.74269 -13.35530 -13.13940 -13.12076 -12.92756 -12.79743 -12.70603 -12.54386 -12.46335 -12.34274 -12.30490 -12.26295 -12.15910 -12.01195 -11.91306 -11.75795 -11.16868 -11.10284 -11.01056 -10.96473 -10.65295 -10.04088 -8.86701 -7.89070 -5.13134 0.08774 0.82074 1.12471 1.42275 1.46524 1.50571 1.57234 2.05025 2.58962 2.85580 2.96791 3.14378 3.36844 3.47425 3.59248 3.65680 3.81056 3.84986 3.98996 3.99461 4.03243 4.11857 4.19773 4.32906 4.37554 4.56389 4.61767 4.63785 4.72841 4.73965 4.78811 4.84663 4.85623 4.86585 4.93218 4.95538 5.07974 5.11194 5.20334 5.22611 5.27731 5.28590 5.31131 5.34356 5.54344 5.59227 6.33914 6.43315 7.10638 7.43925 7.48358 8.15312 8.50241 9.33021 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008189 B = 0.005892 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.308991 B = 4751.290631 C = 7214.174569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.009 4.009 3 C -0.135 4.135 4 C 0.214 3.786 5 N -0.324 5.324 6 N -0.104 5.104 7 N -0.096 5.096 8 N -0.287 5.287 9 C 0.085 3.915 10 C 0.506 3.494 11 O -0.557 6.557 12 N -0.694 5.694 13 C 0.213 3.787 14 C -0.146 4.146 15 C 0.142 3.858 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.054 0.946 19 C -0.052 4.052 20 N -0.952 5.952 21 Si 0.949 3.051 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.296 1.296 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.150 4.150 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.182 0.818 36 H 0.168 0.832 37 H 0.414 0.586 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.013 0.987 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.251 0.749 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.559 -4.023 4.401 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.031 4.031 3 C -0.193 4.193 4 C -0.064 4.064 5 N -0.173 5.173 6 N -0.098 5.098 7 N -0.082 5.082 8 N -0.087 5.087 9 C -0.039 4.039 10 C 0.290 3.710 11 O -0.435 6.435 12 N -0.350 5.350 13 C 0.127 3.873 14 C -0.205 4.205 15 C 0.014 3.986 16 N -0.366 5.366 17 C -0.369 4.369 18 H 0.072 0.928 19 C -0.245 4.245 20 N -0.602 5.602 21 Si 0.780 3.220 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.224 1.224 25 C -0.180 4.180 26 C -0.213 4.213 27 C -0.187 4.187 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.199 0.801 36 H 0.186 0.814 37 H 0.254 0.746 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.031 0.969 42 H 0.039 0.961 43 H 0.219 0.781 44 H 0.060 0.940 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.118 0.882 48 H 0.129 0.871 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.779 -4.251 6.269 13.174 hybrid contribution -0.776 0.517 -1.813 2.039 sum 10.003 -3.734 4.456 11.570 Atomic orbital electron populations 1.21686 0.92768 1.01440 1.03271 1.19903 0.97073 0.97312 0.88830 1.21808 1.01744 0.91797 1.03933 1.26424 0.93531 0.88649 0.97820 1.74869 1.20487 1.22601 0.99322 1.78501 1.07961 0.99892 1.23456 1.78709 1.20668 1.20684 0.88154 1.47987 1.34133 1.19748 1.06835 1.22470 0.99451 0.95737 0.86285 1.20529 0.87033 0.82627 0.80772 1.90756 1.27905 1.71084 1.53708 1.45909 1.19855 1.37321 1.31927 1.19854 0.87041 0.87456 0.92952 1.22016 1.03037 0.97755 0.97678 1.21103 0.94972 0.91180 0.91301 1.42185 1.09730 1.41391 1.43263 1.19400 0.90652 1.12163 1.14719 0.92818 1.25106 0.98316 1.01119 0.99983 1.69728 1.21003 1.38467 1.31047 0.85445 0.79853 0.79252 0.77449 1.20719 1.21370 1.22360 1.22254 0.93066 1.04922 0.97708 1.22948 1.01369 0.97397 0.99615 1.23114 0.96553 0.96575 1.02421 0.91338 0.90237 0.94946 0.88308 0.91518 0.91158 0.89585 0.80064 0.81448 0.74553 0.90172 0.93257 0.91213 0.96948 0.96090 0.78127 0.94006 0.88073 0.89146 0.88174 0.87100 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.18 71.98 0.66 -3.47 16 2 C -0.01 -0.26 3.26 -11.54 -0.04 -0.29 16 3 C -0.13 -2.87 9.18 71.99 0.66 -2.21 16 4 C 0.21 6.55 6.64 138.13 0.92 7.47 16 5 N -0.32 -11.35 12.36 -50.45 -0.62 -11.97 16 6 N -0.10 -3.80 13.43 37.01 0.50 -3.31 16 7 N -0.10 -3.15 13.29 37.02 0.49 -2.66 16 8 N -0.29 -8.10 2.83 -341.98 -0.97 -9.07 16 9 C 0.08 1.67 6.58 85.63 0.56 2.24 16 10 C 0.51 13.91 7.31 87.66 0.64 14.55 16 11 O -0.56 -20.92 12.67 -3.05 -0.04 -20.95 16 12 N -0.69 -16.41 4.49 -422.91 -1.90 -18.31 16 13 C 0.21 5.97 0.52 3.60 0.00 5.97 16 14 C -0.15 -3.76 8.37 71.98 0.60 -3.16 16 15 C 0.14 5.62 4.89 86.38 0.42 6.05 16 16 N -0.72 -32.83 5.22 -343.45 -1.79 -34.63 16 17 C -0.24 -12.51 9.99 84.03 0.84 -11.67 16 18 H 0.05 2.93 7.83 -2.91 -0.02 2.91 16 19 C -0.05 -2.73 5.50 84.86 0.47 -2.26 16 20 N -0.95 -51.43 13.06 21.65 0.28 -51.14 16 21 Si 0.95 43.78 29.55 68.60 2.03 45.80 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 C -0.16 -3.96 4.48 -10.79 -0.05 -4.01 16 26 C -0.18 -3.86 8.98 30.59 0.27 -3.58 16 27 C -0.15 -2.47 9.53 30.59 0.29 -2.18 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 2.67 6.84 -2.39 -0.02 2.66 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.18 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.17 2.44 7.12 -2.39 -0.02 2.42 16 37 H 0.41 7.07 5.64 -92.71 -0.52 6.55 16 38 H 0.08 1.63 7.71 -2.38 -0.02 1.61 16 39 H 0.05 1.54 6.37 -2.39 -0.02 1.52 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 42 H 0.02 0.97 5.99 -2.39 -0.01 0.95 16 43 H 0.38 17.29 6.43 -92.71 -0.60 16.69 16 44 H 0.25 13.26 8.31 -92.71 -0.77 12.48 16 45 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 46 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.10 2.01 5.95 -2.39 -0.01 2.00 16 48 H 0.11 1.44 7.99 -2.39 -0.02 1.42 16 49 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -72.75 396.51 4.09 -68.66 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.14 Total: 34.15 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 6.26 Total: 3.43 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -4.01 Total: -131.08 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.04 Total: -20.95 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.75 4.09 -68.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753525872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.257 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds