Wall clock time and date at job start Tue Mar 31 2020 19:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 C 1.50701 * 109.47572 * 119.99850 * 2 1 3 5 5 N 1.31073 * 126.65904 * 300.04389 * 4 2 1 6 6 N 1.28837 * 107.99178 * 179.97438 * 5 4 2 7 7 N 1.28737 * 109.39642 * 359.73750 * 6 5 4 8 8 N 1.29021 * 108.80811 * 0.43622 * 7 6 5 9 9 C 1.46509 * 126.43848 * 179.83681 * 8 7 6 10 10 C 1.50694 * 109.46935 * 269.68705 * 9 8 7 11 11 O 1.21288 * 120.00255 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99845 * 179.72554 * 10 9 8 13 13 C 1.46502 * 119.99788 * 176.11816 * 12 10 9 14 14 C 1.53004 * 109.46921 * 175.37813 * 13 12 10 15 15 C 1.53004 * 109.47323 * 55.38194 * 13 12 10 16 16 N 1.46496 * 109.47115 * 59.99726 * 15 13 12 17 17 C 1.36936 * 120.00117 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99681 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00162 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00336 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99933 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46829 * 60.00879 * 21 19 17 23 23 H 1.48502 * 109.47123 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47536 * 300.00643 * 21 19 17 25 25 C 1.53003 * 109.47335 * 295.37769 * 13 12 10 26 26 C 1.53001 * 117.49714 * 1.81605 * 25 13 12 27 27 C 1.52994 * 117.49726 * 293.15311 * 25 13 12 28 28 H 1.09003 * 109.46816 * 300.00170 * 1 2 3 29 29 H 1.08994 * 109.47500 * 60.00067 * 1 2 3 30 30 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47326 * 239.99867 * 2 1 3 32 32 H 1.09001 * 109.46931 * 299.99979 * 3 2 1 33 33 H 1.09003 * 109.47385 * 60.00178 * 3 2 1 34 34 H 1.09002 * 109.46907 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47135 * 149.68535 * 9 8 7 36 36 H 1.09004 * 109.46763 * 29.68769 * 9 8 7 37 37 H 0.97000 * 120.00255 * 356.11894 * 12 10 9 38 38 H 1.09006 * 109.47008 * 60.00442 * 14 13 12 39 39 H 1.09000 * 109.47121 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47615 * 300.00066 * 14 13 12 41 41 H 1.09000 * 109.47042 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.46537 * 299.99630 * 15 13 12 43 43 H 0.96999 * 120.00038 * 359.97438 * 16 15 13 44 44 H 0.97003 * 120.00732 * 179.97438 * 20 19 17 45 45 H 1.08998 * 115.54682 * 147.48247 * 25 13 12 46 46 H 1.08994 * 117.49647 * 359.97438 * 26 25 13 47 47 H 1.09003 * 117.49416 * 145.02314 * 26 25 13 48 48 H 1.08999 * 117.49696 * 214.97769 * 27 25 13 49 49 H 1.09000 * 117.50569 * 0.02562 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7970 -0.3787 2.4765 6 7 2.3981 -1.2291 3.2350 7 7 3.0064 -2.0979 2.5052 8 7 2.8095 -1.8088 1.2633 9 6 3.3291 -2.5420 0.1062 10 6 4.6670 -1.9728 -0.2898 11 8 5.1399 -1.0456 0.3328 12 7 5.3405 -2.4973 -1.3327 13 6 6.5999 -1.8907 -1.7711 14 6 7.2130 -2.7387 -2.8874 15 6 7.5711 -1.8223 -0.5908 16 7 7.8285 -3.1752 -0.0912 17 6 8.6731 -3.3640 0.9700 18 1 9.1498 -2.5155 1.4383 19 6 8.9166 -4.6458 1.4438 20 7 8.3361 -5.6798 0.8727 21 14 10.0694 -4.9034 2.8909 22 1 9.5466 -4.1765 4.0757 23 1 10.1602 -6.3531 3.1996 24 1 11.4182 -4.3854 2.5478 25 6 6.3310 -0.4778 -2.2930 26 6 4.8919 0.0375 -2.2275 27 6 5.5084 -0.3433 -3.5759 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 2.6327 -2.4467 -0.7270 36 1 3.4442 -3.5946 0.3649 37 1 4.9913 -3.2765 -1.7931 38 1 6.5211 -2.7874 -3.7284 39 1 8.1498 -2.2871 -3.2139 40 1 7.4045 -3.7453 -2.5157 41 1 8.5083 -1.3714 -0.9171 42 1 7.1343 -1.2182 0.2045 43 1 7.4001 -3.9371 -0.5116 44 1 8.5066 -6.5757 1.2035 45 1 7.1318 0.2436 -2.1305 46 1 4.1367 -0.6302 -1.8130 47 1 4.7460 1.0981 -2.0224 48 1 5.7677 0.4670 -4.2573 49 1 5.1583 -1.2612 -4.0480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753525873.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:37 Heat of formation + Delta-G solvation = 129.699125 kcal Electronic energy + Delta-G solvation = -31339.153708 eV Core-core repulsion = 27341.024085 eV Total energy + Delta-G solvation = -3998.129623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.10379 -40.62837 -37.67898 -36.32434 -35.29207 -35.02063 -33.56134 -31.80282 -31.33144 -29.84952 -28.65987 -27.49609 -26.11313 -24.43743 -23.88939 -23.41733 -22.33216 -21.56822 -21.30111 -20.56035 -19.28725 -17.94591 -17.68847 -17.36524 -16.23169 -16.11100 -15.82722 -15.47201 -15.05839 -14.65422 -14.38618 -14.11676 -13.85620 -13.50946 -13.41318 -13.34482 -12.95008 -12.81613 -12.48418 -12.31872 -12.22490 -12.12403 -11.95213 -11.84502 -11.61294 -11.52806 -11.37295 -11.24003 -11.22800 -10.94156 -10.92341 -10.85498 -10.75099 -10.36644 -10.15140 -10.02696 -9.93707 -9.70052 -9.50130 -8.88196 -8.75773 -6.85712 -5.75191 -3.01205 1.27113 1.85237 2.36690 2.54672 3.10772 3.47847 3.51685 3.54231 3.76476 3.81886 4.07467 4.27250 4.46589 4.55594 4.66248 4.69592 4.72881 4.83206 4.92544 4.96534 5.02712 5.27687 5.32231 5.38798 5.40981 5.47359 5.53404 5.57362 5.59801 5.60913 5.62331 5.79003 5.80176 5.89765 5.91244 5.99267 6.02577 6.07042 6.11946 6.14629 6.23267 6.44278 6.52266 6.77394 7.03225 7.54177 7.74404 8.22623 8.44667 8.73432 9.56520 10.12171 10.47750 11.48010 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004359 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.398508 B = 6422.133530 C = 8243.896875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.008 4.008 3 C -0.144 4.144 4 C 0.195 3.805 5 N -0.303 5.303 6 N -0.078 5.078 7 N -0.073 5.073 8 N -0.288 5.288 9 C 0.087 3.913 10 C 0.510 3.490 11 O -0.498 6.498 12 N -0.707 5.707 13 C 0.202 3.798 14 C -0.148 4.148 15 C 0.139 3.861 16 N -0.725 5.725 17 C -0.231 4.231 18 H 0.067 0.933 19 C -0.013 4.013 20 N -0.938 5.938 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 C -0.144 4.144 26 C -0.164 4.164 27 C -0.180 4.180 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.399 0.601 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.021 0.979 42 H 0.055 0.945 43 H 0.381 0.619 44 H 0.254 0.746 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.964 9.645 -13.985 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.083 4.083 5 N -0.152 5.152 6 N -0.071 5.071 7 N -0.058 5.058 8 N -0.089 5.089 9 C -0.039 4.039 10 C 0.292 3.708 11 O -0.371 6.371 12 N -0.359 5.359 13 C 0.117 3.883 14 C -0.205 4.205 15 C 0.011 3.989 16 N -0.370 5.370 17 C -0.362 4.362 18 H 0.085 0.915 19 C -0.208 4.208 20 N -0.587 5.587 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.214 1.214 25 C -0.163 4.163 26 C -0.201 4.201 27 C -0.217 4.217 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.233 0.767 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.215 0.785 44 H 0.063 0.937 45 H 0.128 0.872 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.370 10.187 -11.939 21.966 hybrid contribution 0.585 -1.054 -0.444 1.285 sum -14.784 9.133 -12.383 21.338 Atomic orbital electron populations 1.21848 0.92176 1.02598 1.03554 1.19733 0.97077 0.96537 0.89601 1.21833 1.02173 0.93048 1.03138 1.25987 0.95324 0.89093 0.97899 1.74898 1.20830 1.21125 0.98339 1.78616 1.07073 0.99004 1.22424 1.79030 1.18178 1.21487 0.87126 1.47831 1.33499 1.20653 1.06899 1.22070 0.96490 0.99331 0.86045 1.19853 0.85845 0.84196 0.80871 1.90795 1.67152 1.28240 1.50912 1.45840 1.24202 1.32893 1.32983 1.20136 0.82931 0.89994 0.95240 1.21994 1.00944 1.01234 0.96345 1.21170 0.93968 0.90036 0.93749 1.42197 1.55392 1.01513 1.37851 1.19158 1.18317 0.92261 1.06500 0.91507 1.24641 1.00910 0.95499 0.99780 1.69614 1.47611 0.97881 1.43597 0.86295 0.80685 0.76639 0.82799 1.21270 1.21710 1.21371 1.22580 0.95414 0.97778 1.00573 1.22903 0.96292 1.01035 0.99888 1.22986 1.05002 1.02865 0.90848 0.90963 0.90928 0.92447 0.89391 0.91114 0.91155 0.91658 0.84979 0.83897 0.76726 0.92762 0.90802 0.90557 0.96084 0.92768 0.78540 0.93653 0.87204 0.89704 0.89291 0.89154 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.18 37.15 0.34 -0.63 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -1.26 9.18 37.16 0.34 -0.92 16 4 C 0.20 2.60 6.64 -155.43 -1.03 1.56 16 5 N -0.30 -4.98 12.36 32.70 0.40 -4.58 16 6 N -0.08 -1.47 13.43 60.35 0.81 -0.66 16 7 N -0.07 -1.34 13.29 60.35 0.80 -0.54 16 8 N -0.29 -4.15 2.83 -59.44 -0.17 -4.32 16 9 C 0.09 0.93 6.57 -5.19 -0.03 0.90 16 10 C 0.51 7.14 4.91 -10.99 -0.05 7.08 16 11 O -0.50 -9.21 12.70 5.55 0.07 -9.13 16 12 N -0.71 -8.74 4.20 -47.60 -0.20 -8.94 16 13 C 0.20 2.88 0.55 -131.81 -0.07 2.80 16 14 C -0.15 -1.89 8.18 37.16 0.30 -1.59 16 15 C 0.14 2.80 4.83 -4.04 -0.02 2.78 16 16 N -0.72 -17.75 5.17 -59.91 -0.31 -18.06 16 17 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.94 -27.86 13.06 55.49 0.72 -27.14 16 21 Si 0.90 23.14 29.55 -169.99 -5.02 18.11 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 C -0.14 -1.77 4.86 -90.62 -0.44 -2.21 16 26 C -0.16 -1.74 8.53 -26.69 -0.23 -1.96 16 27 C -0.18 -1.65 9.68 -26.69 -0.26 -1.91 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.57 6.85 -51.93 -0.36 0.22 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.13 0.71 7.13 -51.93 -0.37 0.34 16 36 H 0.14 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.40 3.72 8.48 -40.82 -0.35 3.37 16 38 H 0.05 0.53 6.89 -51.93 -0.36 0.17 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.16 6.86 -51.93 -0.36 0.81 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 1.26 5.72 -51.93 -0.30 0.96 16 43 H 0.38 9.39 6.35 -40.82 -0.26 9.13 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.11 1.43 8.06 -51.93 -0.42 1.02 16 46 H 0.08 0.86 5.17 -51.93 -0.27 0.59 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.75 7.18 -51.93 -0.37 0.38 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -37.06 394.17 -6.25 -43.31 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.60 Total: 7.67 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.70 Total: -1.65 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: 2.06 Total: -64.24 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.06 -6.25 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753525873.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.009 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds