Wall clock time and date at job start Tue Mar 31 2020 19:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 C 1.50701 * 109.47572 * 119.99850 * 2 1 3 5 5 N 1.31073 * 126.65904 * 300.04389 * 4 2 1 6 6 N 1.28837 * 107.99178 * 179.97438 * 5 4 2 7 7 N 1.28737 * 109.39642 * 359.73750 * 6 5 4 8 8 N 1.29021 * 108.80811 * 0.43622 * 7 6 5 9 9 C 1.46509 * 126.43848 * 179.83681 * 8 7 6 10 10 C 1.50694 * 109.46935 * 269.68705 * 9 8 7 11 11 O 1.21288 * 120.00255 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99845 * 179.72554 * 10 9 8 13 13 C 1.46502 * 119.99788 * 176.11816 * 12 10 9 14 14 C 1.53004 * 109.46921 * 175.37813 * 13 12 10 15 15 C 1.53004 * 109.47323 * 55.38194 * 13 12 10 16 16 N 1.46496 * 109.47115 * 59.99726 * 15 13 12 17 17 C 1.36936 * 120.00117 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99681 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00162 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00336 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99933 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46829 * 60.00879 * 21 19 17 23 23 H 1.48502 * 109.47123 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47536 * 300.00643 * 21 19 17 25 25 C 1.53003 * 109.47335 * 295.37769 * 13 12 10 26 26 C 1.53001 * 117.49714 * 1.81605 * 25 13 12 27 27 C 1.52994 * 117.49726 * 293.15311 * 25 13 12 28 28 H 1.09003 * 109.46816 * 300.00170 * 1 2 3 29 29 H 1.08994 * 109.47500 * 60.00067 * 1 2 3 30 30 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47326 * 239.99867 * 2 1 3 32 32 H 1.09001 * 109.46931 * 299.99979 * 3 2 1 33 33 H 1.09003 * 109.47385 * 60.00178 * 3 2 1 34 34 H 1.09002 * 109.46907 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47135 * 149.68535 * 9 8 7 36 36 H 1.09004 * 109.46763 * 29.68769 * 9 8 7 37 37 H 0.97000 * 120.00255 * 356.11894 * 12 10 9 38 38 H 1.09006 * 109.47008 * 60.00442 * 14 13 12 39 39 H 1.09000 * 109.47121 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47615 * 300.00066 * 14 13 12 41 41 H 1.09000 * 109.47042 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.46537 * 299.99630 * 15 13 12 43 43 H 0.96999 * 120.00038 * 359.97438 * 16 15 13 44 44 H 0.97003 * 120.00732 * 179.97438 * 20 19 17 45 45 H 1.08998 * 115.54682 * 147.48247 * 25 13 12 46 46 H 1.08994 * 117.49647 * 359.97438 * 26 25 13 47 47 H 1.09003 * 117.49416 * 145.02314 * 26 25 13 48 48 H 1.08999 * 117.49696 * 214.97769 * 27 25 13 49 49 H 1.09000 * 117.50569 * 0.02562 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7970 -0.3787 2.4765 6 7 2.3981 -1.2291 3.2350 7 7 3.0064 -2.0979 2.5052 8 7 2.8095 -1.8088 1.2633 9 6 3.3291 -2.5420 0.1062 10 6 4.6670 -1.9728 -0.2898 11 8 5.1399 -1.0456 0.3328 12 7 5.3405 -2.4973 -1.3327 13 6 6.5999 -1.8907 -1.7711 14 6 7.2130 -2.7387 -2.8874 15 6 7.5711 -1.8223 -0.5908 16 7 7.8285 -3.1752 -0.0912 17 6 8.6731 -3.3640 0.9700 18 1 9.1498 -2.5155 1.4383 19 6 8.9166 -4.6458 1.4438 20 7 8.3361 -5.6798 0.8727 21 14 10.0694 -4.9034 2.8909 22 1 9.5466 -4.1765 4.0757 23 1 10.1602 -6.3531 3.1996 24 1 11.4182 -4.3854 2.5478 25 6 6.3310 -0.4778 -2.2930 26 6 4.8919 0.0375 -2.2275 27 6 5.5084 -0.3433 -3.5759 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 2.6327 -2.4467 -0.7270 36 1 3.4442 -3.5946 0.3649 37 1 4.9913 -3.2765 -1.7931 38 1 6.5211 -2.7874 -3.7284 39 1 8.1498 -2.2871 -3.2139 40 1 7.4045 -3.7453 -2.5157 41 1 8.5083 -1.3714 -0.9171 42 1 7.1343 -1.2182 0.2045 43 1 7.4001 -3.9371 -0.5116 44 1 8.5066 -6.5757 1.2035 45 1 7.1318 0.2436 -2.1305 46 1 4.1367 -0.6302 -1.8130 47 1 4.7460 1.0981 -2.0224 48 1 5.7677 0.4670 -4.2573 49 1 5.1583 -1.2612 -4.0480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753525873.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:36 Heat of formation + Delta-G solvation = 102.252691 kcal Electronic energy + Delta-G solvation = -31340.343875 eV Core-core repulsion = 27341.024085 eV Total energy + Delta-G solvation = -3999.319790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -45.27417 -41.74080 -38.77438 -37.13277 -36.59872 -36.32614 -35.00714 -33.38898 -32.49467 -31.44834 -29.69779 -28.08675 -27.66515 -25.59786 -25.44591 -24.64405 -23.11462 -22.97170 -22.35322 -21.48265 -20.43449 -19.33777 -19.02173 -18.69313 -17.39837 -17.26651 -16.93333 -16.65114 -16.28796 -15.93030 -15.44075 -15.39271 -15.05462 -15.01881 -14.67222 -14.39765 -14.16710 -13.84629 -13.56778 -13.50323 -13.32008 -13.12297 -13.06396 -13.02626 -12.83301 -12.68243 -12.46844 -12.38319 -12.30087 -12.26781 -12.24942 -12.16251 -11.98274 -11.85114 -11.79791 -11.26617 -11.13706 -11.04272 -10.93723 -10.49202 -10.03556 -8.93858 -7.98938 -5.23070 0.13971 0.87484 1.15566 1.40413 1.43491 1.48260 1.48775 2.09345 2.51746 2.90791 2.97899 3.17841 3.34102 3.48440 3.60544 3.65584 3.89143 3.99707 4.01540 4.05121 4.08702 4.18777 4.20700 4.35496 4.38488 4.41170 4.58991 4.67758 4.80493 4.82943 4.83881 4.87922 4.91383 4.92977 4.97210 5.00688 5.11319 5.16672 5.21258 5.29913 5.33115 5.36942 5.38074 5.39247 5.43958 5.64380 6.25223 6.51590 7.21241 7.33273 7.51212 8.07495 8.37017 9.23419 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004359 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.398508 B = 6422.133530 C = 8243.896875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.141 4.141 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.111 5.111 7 N -0.112 5.112 8 N -0.287 5.287 9 C 0.082 3.918 10 C 0.506 3.494 11 O -0.549 6.549 12 N -0.695 5.695 13 C 0.215 3.785 14 C -0.140 4.140 15 C 0.139 3.861 16 N -0.726 5.726 17 C -0.245 4.245 18 H 0.055 0.945 19 C -0.062 4.062 20 N -0.958 5.958 21 Si 0.959 3.041 22 H -0.292 1.292 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.173 4.173 26 C -0.164 4.164 27 C -0.144 4.144 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.197 0.803 36 H 0.153 0.847 37 H 0.417 0.583 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.009 0.991 42 H 0.023 0.977 43 H 0.379 0.621 44 H 0.252 0.748 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.881 9.611 -17.502 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.199 4.199 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.104 5.104 7 N -0.098 5.098 8 N -0.087 5.087 9 C -0.042 4.042 10 C 0.290 3.710 11 O -0.426 6.426 12 N -0.348 5.348 13 C 0.129 3.871 14 C -0.197 4.197 15 C 0.011 3.989 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.073 0.927 19 C -0.255 4.255 20 N -0.608 5.608 21 Si 0.789 3.211 22 H -0.219 1.219 23 H -0.212 1.212 24 H -0.204 1.204 25 C -0.193 4.193 26 C -0.201 4.201 27 C -0.180 4.180 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.214 0.786 36 H 0.171 0.829 37 H 0.255 0.745 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.041 0.959 43 H 0.213 0.787 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.104 0.896 48 H 0.123 0.877 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.292 10.138 -15.500 25.339 hybrid contribution 1.215 -0.942 0.611 1.655 sum -16.077 9.197 -14.889 23.764 Atomic orbital electron populations 1.21857 0.90318 1.03274 1.04269 1.20141 0.98428 0.96022 0.88356 1.21824 1.00518 0.93450 1.04091 1.26901 0.93447 0.88090 0.98426 1.74804 1.21709 1.21492 0.99858 1.78559 1.08172 0.99914 1.23776 1.78920 1.19348 1.22482 0.89076 1.48043 1.33144 1.21064 1.06479 1.22530 0.95999 0.99005 0.86672 1.20414 0.86786 0.83461 0.80333 1.90797 1.68620 1.30674 1.52475 1.45723 1.23179 1.33193 1.32725 1.19824 0.82294 0.92109 0.92888 1.21934 1.01823 0.99023 0.96941 1.21204 0.95038 0.87235 0.95381 1.42226 1.54620 1.03169 1.36956 1.19403 1.18748 0.92070 1.07483 0.92731 1.25279 1.02658 0.95380 1.02159 1.69716 1.48645 0.97864 1.44603 0.85431 0.79355 0.76472 0.79830 1.21890 1.21246 1.20421 1.22394 0.96366 0.96079 1.04463 1.22954 0.94913 1.01054 1.01149 1.23089 1.01318 1.03993 0.89628 0.92744 0.87737 0.91818 0.86019 0.87603 0.92796 0.94150 0.78614 0.82918 0.74536 0.88478 0.91283 0.93188 0.97269 0.95903 0.78670 0.93926 0.89059 0.88924 0.89566 0.87725 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.18 71.98 0.66 -0.74 16 2 C -0.01 -0.11 3.26 -11.54 -0.04 -0.15 16 3 C -0.14 -2.18 9.18 71.98 0.66 -1.52 16 4 C 0.21 5.36 6.64 138.14 0.92 6.28 16 5 N -0.33 -11.08 12.36 -50.45 -0.62 -11.70 16 6 N -0.11 -4.36 13.43 37.01 0.50 -3.86 16 7 N -0.11 -4.26 13.29 37.02 0.49 -3.76 16 8 N -0.29 -8.02 2.83 -341.96 -0.97 -8.99 16 9 C 0.08 1.54 6.57 85.63 0.56 2.10 16 10 C 0.51 13.47 4.91 87.66 0.43 13.90 16 11 O -0.55 -20.61 12.70 -3.05 -0.04 -20.65 16 12 N -0.69 -15.75 4.20 -422.91 -1.78 -17.53 16 13 C 0.22 5.89 0.55 3.61 0.00 5.90 16 14 C -0.14 -3.30 8.18 71.98 0.59 -2.71 16 15 C 0.14 5.81 4.83 86.38 0.42 6.23 16 16 N -0.73 -36.48 5.17 -343.45 -1.78 -38.26 16 17 C -0.24 -14.33 9.99 84.03 0.84 -13.49 16 18 H 0.05 3.25 7.83 -2.91 -0.02 3.23 16 19 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 20 N -0.96 -57.35 13.06 21.65 0.28 -57.07 16 21 Si 0.96 48.24 29.55 68.60 2.03 50.27 16 22 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 25 C -0.17 -3.99 4.86 -10.79 -0.05 -4.05 16 26 C -0.16 -2.99 8.53 30.62 0.26 -2.73 16 27 C -0.14 -2.00 9.68 30.62 0.30 -1.71 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.12 0.92 6.85 -2.39 -0.02 0.91 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.20 1.02 7.13 -2.39 -0.02 1.00 16 36 H 0.15 2.65 8.14 -2.38 -0.02 2.64 16 37 H 0.42 6.35 8.48 -92.71 -0.79 5.56 16 38 H 0.10 1.45 6.89 -2.38 -0.02 1.44 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.46 6.86 -2.39 -0.02 1.44 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.02 1.13 5.72 -2.39 -0.01 1.12 16 43 H 0.38 18.99 6.35 -92.71 -0.59 18.40 16 44 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.09 2.42 8.06 -2.39 -0.02 2.40 16 46 H 0.09 1.52 5.17 -2.39 -0.01 1.51 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 49 H 0.11 1.14 7.18 -2.39 -0.02 1.13 16 Total: -1.00 -87.44 394.17 3.74 -83.70 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.39 Total: 23.67 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 6.01 Total: 4.18 kcal Atomic # 7 Polarization: -137.30 SS G_CDS: -3.88 Total: -141.17 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.04 Total: -20.65 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -87.44 3.74 -83.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753525873.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.954 kcal (2) G-P(sol) polarization free energy of solvation -87.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds