Wall clock time and date at job start Tue Mar 31 2020 19:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00032 * 2 1 4 4 C 1.53002 * 109.46981 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46666 * 179.97438 * 4 3 2 6 6 C 1.34259 * 125.75052 * 125.00463 * 5 4 3 7 7 C 1.38045 * 107.41649 * 179.97438 * 6 5 4 8 8 C 1.47426 * 126.41745 * 179.97438 * 7 6 5 9 9 O 1.21613 * 119.99734 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00165 * 179.97438 * 8 7 6 11 11 C 1.46507 * 120.00207 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.01469 * 33.61313 * 11 10 8 13 13 C 1.54265 * 110.03211 * 272.17084 * 11 10 8 14 14 C 1.54890 * 104.19358 * 264.32248 * 13 11 10 15 15 C 1.54894 * 102.74813 * 322.05537 * 14 13 11 16 16 C 1.53870 * 110.03466 * 154.99775 * 11 10 8 17 17 H 1.09000 * 110.03284 * 359.95793 * 16 11 10 18 18 C 1.52997 * 110.03686 * 238.57216 * 16 11 10 19 19 N 1.46505 * 109.47212 * 175.00000 * 18 16 11 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00145 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00180 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47586 * 89.99558 * 24 22 20 26 26 H 1.48505 * 109.47293 * 210.00502 * 24 22 20 27 27 H 1.48505 * 109.46772 * 329.99807 * 24 22 20 28 28 C 1.41294 * 107.16976 * 0.22345 * 7 6 5 29 29 N 1.30451 * 108.02151 * 359.61855 * 28 7 6 30 30 H 1.08997 * 109.47396 * 59.99889 * 1 2 3 31 31 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47253 * 299.99660 * 1 2 3 33 33 H 1.09004 * 109.46968 * 59.99939 * 3 2 1 34 34 H 1.08997 * 109.46867 * 299.99995 * 3 2 1 35 35 H 1.08997 * 109.47258 * 60.00532 * 4 3 2 36 36 H 1.08997 * 109.47328 * 299.99727 * 4 3 2 37 37 H 1.08001 * 126.29353 * 359.97438 * 6 5 4 38 38 H 0.97001 * 120.00331 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.48786 * 23.00041 * 13 11 10 40 40 H 1.09005 * 110.48342 * 145.64470 * 13 11 10 41 41 H 1.08998 * 110.75426 * 80.37434 * 14 13 11 42 42 H 1.09001 * 110.75430 * 203.55756 * 14 13 11 43 43 H 1.08994 * 110.48714 * 279.26294 * 15 14 13 44 44 H 1.08998 * 110.48108 * 156.61627 * 15 14 13 45 45 H 1.09002 * 109.47153 * 54.99992 * 18 16 11 46 46 H 1.09001 * 109.46832 * 295.00183 * 18 16 11 47 47 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 48 48 H 0.97010 * 119.99864 * 180.02562 * 23 22 20 49 49 H 1.08002 * 125.98712 * 179.74343 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3269 4.2840 0.5359 8 6 6.2619 5.1859 1.2327 9 8 6.8507 4.8025 2.2254 10 7 6.4651 6.4350 0.7692 11 6 7.3947 7.3312 1.4614 12 1 8.2199 6.7583 1.8845 13 6 6.6564 8.0991 2.5772 14 6 6.2713 9.4475 1.9194 15 6 7.5055 9.7627 1.0381 16 6 7.9346 8.3888 0.4828 17 1 7.5055 8.2349 -0.5073 18 6 9.4606 8.3060 0.4110 19 7 9.9525 9.2343 -0.6101 20 6 11.2963 9.3347 -0.8538 21 1 11.9934 8.7293 -0.2935 22 6 11.7624 10.2146 -1.8208 23 7 13.0540 10.3107 -2.0554 24 14 10.5567 11.2622 -2.7895 25 1 10.3374 12.5483 -2.0803 26 1 11.1090 11.5304 -4.1416 27 1 9.2650 10.5406 -2.9166 28 6 4.5717 4.5882 -0.6189 29 7 3.8695 3.5341 -0.9312 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8575 0.6436 -0.8891 36 1 3.8567 0.6439 0.8908 37 1 5.4234 2.4428 1.7348 38 1 5.9958 6.7408 -0.0228 39 1 5.7630 7.5568 2.8868 40 1 7.3174 8.2646 3.4280 41 1 5.3769 9.3367 1.3064 42 1 6.1262 10.2188 2.6759 43 1 8.3034 10.1969 1.6403 44 1 7.2316 10.4343 0.2245 45 1 9.7575 7.2898 0.1515 46 1 9.8849 8.5725 1.3790 47 1 9.3264 9.7782 -1.1130 48 1 13.3797 10.9260 -2.7310 49 1 4.5766 5.5281 -1.1510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753897637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:06 Heat of formation + Delta-G solvation = 2.505214 kcal Electronic energy + Delta-G solvation = -28335.582995 eV Core-core repulsion = 24299.645079 eV Total energy + Delta-G solvation = -4035.937916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73937 -39.76583 -38.56628 -37.84550 -34.64905 -34.41920 -33.33573 -31.50049 -30.81304 -29.84429 -28.99342 -27.68281 -26.78512 -24.70986 -23.99945 -23.07469 -21.73995 -21.12582 -20.83960 -19.95057 -19.60533 -18.26089 -17.52084 -17.01669 -16.84190 -16.34519 -16.04473 -15.80161 -15.31654 -15.07877 -14.73470 -14.57754 -14.39317 -14.24096 -13.90558 -13.72987 -13.56620 -13.19651 -13.08600 -12.67131 -12.62343 -12.27660 -12.12242 -11.96667 -11.84208 -11.47076 -11.33647 -11.04252 -10.90676 -10.80640 -10.64661 -10.46608 -10.39498 -10.36044 -10.06424 -9.99638 -9.82871 -9.56438 -9.14525 -8.87460 -8.83379 -7.19669 -5.73857 -3.09040 1.21720 1.75155 1.89489 3.15210 3.25202 3.37960 3.39903 3.40280 3.46160 4.01343 4.26253 4.41363 4.42204 4.59057 4.60899 4.61815 4.73264 4.75199 4.77301 4.86965 4.94905 5.02088 5.04065 5.09427 5.18906 5.35565 5.40218 5.52912 5.57185 5.63536 5.74788 5.80063 5.83724 5.89546 6.01305 6.04218 6.16691 6.20312 6.33110 6.36912 6.45640 6.50964 6.60098 6.72603 6.84906 7.14848 7.57592 8.03130 8.29805 8.45182 9.24630 9.96759 10.16961 11.44704 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.002006 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.195612 B =13952.451526 C =14548.202097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.363 5.363 6 C 0.132 3.868 7 C -0.288 4.288 8 C 0.594 3.406 9 O -0.550 6.550 10 N -0.715 5.715 11 C 0.149 3.851 12 H 0.096 0.904 13 C -0.130 4.130 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.107 4.107 17 H 0.077 0.923 18 C 0.165 3.835 19 N -0.754 5.754 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.085 3.915 29 N -0.297 5.297 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.397 0.603 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.031 0.969 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.768 -16.678 6.812 33.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.019 4.019 7 C -0.303 4.303 8 C 0.382 3.618 9 O -0.429 6.429 10 N -0.365 5.365 11 C 0.044 3.956 12 H 0.114 0.886 13 C -0.168 4.168 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.127 4.127 17 H 0.095 0.905 18 C 0.038 3.962 19 N -0.400 5.400 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.103 4.103 29 N -0.116 5.116 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.896 -17.822 6.711 33.776 hybrid contribution -0.588 1.536 -0.725 1.797 sum -28.484 -16.286 5.985 33.353 Atomic orbital electron populations 1.22791 0.79821 1.03209 1.00429 1.87783 1.20678 1.26811 1.95613 1.22646 0.92424 0.85453 1.02135 1.21504 0.92759 0.78614 1.05862 1.48318 1.33111 1.12086 1.20775 1.23010 0.90520 0.94282 0.94081 1.20324 1.10242 0.96440 1.03317 1.17191 0.80455 0.80981 0.83216 1.90778 1.49913 1.75816 1.26356 1.45932 1.46035 1.13106 1.31458 1.21626 0.91594 0.90217 0.92165 0.88616 1.22745 1.00337 0.95933 0.97832 1.22531 0.97988 0.96917 0.98819 1.22420 0.97453 0.96334 0.99183 1.22280 0.97923 0.94085 0.98389 0.90490 1.20719 0.89094 0.93658 0.92729 1.42674 1.05052 1.48313 1.43927 1.19078 0.82117 1.19332 1.16683 0.89232 1.24667 0.95544 0.99716 0.99309 1.69709 1.11541 1.40621 1.36439 0.86541 0.80922 0.80978 0.80038 1.21093 1.21809 1.20415 1.24122 0.93479 0.97807 0.94875 1.77169 1.24542 0.96750 1.13178 0.93640 0.89085 0.93768 0.92565 0.91419 0.88211 0.87200 0.79314 0.76878 0.91597 0.90679 0.91979 0.91717 0.90503 0.91702 0.95530 0.95128 0.80712 0.93119 0.79223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.63 10.70 -35.23 -0.38 -3.01 16 3 C 0.05 0.31 6.11 37.16 0.23 0.54 16 4 C 0.13 0.78 6.86 -4.04 -0.03 0.75 16 5 N -0.36 -3.06 3.65 -60.81 -0.22 -3.29 16 6 C 0.13 1.19 11.25 -16.56 -0.19 1.00 16 7 C -0.29 -3.06 6.13 -105.07 -0.64 -3.70 16 8 C 0.59 7.67 7.81 -12.52 -0.10 7.57 16 9 O -0.55 -8.96 16.55 5.27 0.09 -8.87 16 10 N -0.72 -8.21 5.02 -53.79 -0.27 -8.48 16 11 C 0.15 1.95 2.90 -66.81 -0.19 1.75 16 12 H 0.10 1.46 7.09 -51.93 -0.37 1.09 16 13 C -0.13 -1.51 6.54 -25.07 -0.16 -1.68 16 14 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 15 C -0.12 -1.56 6.08 -25.07 -0.15 -1.71 16 16 C -0.11 -1.55 2.73 -89.50 -0.24 -1.80 16 17 H 0.08 1.08 7.62 -51.93 -0.40 0.69 16 18 C 0.17 3.18 5.31 -4.04 -0.02 3.16 16 19 N -0.75 -17.80 5.25 -59.91 -0.31 -18.11 16 20 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 21 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 22 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 24 Si 0.88 22.11 27.74 -169.99 -4.71 17.39 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 28 C 0.09 0.79 11.50 -16.98 -0.20 0.60 16 29 N -0.30 -2.99 12.33 30.86 0.38 -2.61 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.41 8.06 -51.93 -0.42 -0.01 16 37 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.40 3.60 7.27 -40.82 -0.30 3.31 16 39 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.14 7.76 -51.93 -0.40 0.74 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 47 H 0.36 8.21 5.41 -40.82 -0.22 7.99 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 49 H 0.19 1.21 7.50 -52.49 -0.39 0.82 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -36.09 403.82 -7.58 -43.67 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.99 Total: 6.95 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.01 Total: -0.88 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.35 Total: -61.34 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.29 Total: -11.88 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.09 -7.58 -43.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.176 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds